Wall clock time and date at job start Mon Mar 30 2020 02:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36595 * 125.91037 * 2 1 4 4 C 1.50701 * 125.77582 * 359.94096 * 3 2 1 5 5 C 1.52997 * 109.47212 * 275.00231 * 4 3 2 6 6 C 1.50697 * 109.47466 * 179.97438 * 5 4 3 7 7 H 1.08001 * 119.99890 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00428 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99563 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00432 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46756 * 59.99920 * 10 8 6 12 12 H 1.48490 * 109.47381 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47117 * 300.00527 * 10 8 6 14 14 C 1.34828 * 108.45315 * 180.20902 * 3 2 1 15 15 C 1.41476 * 108.08210 * 359.61158 * 14 3 2 16 16 O 1.21779 * 126.19645 * 180.15327 * 15 14 3 17 17 N 1.34879 * 107.61306 * 0.38725 * 15 14 3 18 18 C 1.46498 * 126.16462 * 179.78764 * 17 15 14 19 19 H 1.08997 * 109.47480 * 90.00449 * 1 2 3 20 20 H 1.09007 * 109.46912 * 210.00371 * 1 2 3 21 21 H 1.09003 * 109.46864 * 329.99960 * 1 2 3 22 22 H 1.09002 * 109.47060 * 35.00286 * 4 3 2 23 23 H 1.09001 * 109.47380 * 155.00374 * 4 3 2 24 24 H 1.09002 * 109.47153 * 299.99998 * 5 4 3 25 25 H 1.08998 * 109.47533 * 59.99628 * 5 4 3 26 26 H 0.97002 * 119.99731 * 180.02562 * 9 8 6 27 27 H 1.07994 * 125.95955 * 179.72296 * 14 3 2 28 28 H 1.09002 * 109.47052 * 269.97736 * 18 17 15 29 29 H 1.08997 * 109.47303 * 29.97550 * 18 17 15 30 30 H 1.09001 * 109.46594 * 149.97596 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2662 1.1063 0.0000 4 6 1.7926 2.5370 -0.0013 5 6 1.5142 2.9808 -1.4387 6 6 1.0401 4.4112 -1.4400 7 1 0.9471 4.9501 -0.5087 8 6 0.7260 5.0324 -2.6302 9 7 0.8397 4.3764 -3.7643 10 14 0.1376 6.8053 -2.6317 11 1 1.1851 7.6750 -2.0386 12 1 -0.1314 7.2365 -4.0269 13 1 -1.1080 6.9142 -1.8305 14 6 3.5523 0.7019 -0.0047 15 6 3.5678 -0.7128 0.0014 16 8 4.5584 -1.4212 0.0021 17 7 2.2868 -1.1350 0.0009 18 6 1.8359 -2.5288 0.0017 19 1 -0.3634 -0.0001 -1.0276 20 1 -0.3633 -0.8900 0.5139 21 1 -0.3633 0.8900 0.5139 22 1 0.8788 2.6178 0.5874 23 1 2.5623 3.1749 0.4332 24 1 2.4280 2.9000 -2.0274 25 1 0.7446 2.3430 -1.8733 26 1 0.6191 4.8135 -4.6017 27 1 4.4195 1.3455 -0.0101 28 1 1.7243 -2.8752 -1.0258 29 1 2.5707 -3.1481 0.5160 30 1 0.8772 -2.6002 0.5153 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260809464.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:42 Heat of formation + Delta-G solvation = 34.490374 kcal Electronic energy + Delta-G solvation = -13679.371825 eV Core-core repulsion = 11284.032898 eV Total energy + Delta-G solvation = -2395.338927 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.13639 -36.88548 -34.49155 -32.88122 -31.81496 -30.75548 -27.02679 -25.69369 -24.59986 -21.66150 -20.61380 -19.13637 -17.10162 -16.42063 -15.95675 -15.15837 -14.79385 -14.55538 -13.76213 -13.27032 -13.10162 -13.02678 -12.69573 -12.50898 -12.32830 -12.20210 -11.54062 -11.01420 -10.99916 -10.68571 -10.11008 -9.84693 -9.41599 -9.21558 -8.64611 -8.45761 -7.33343 -6.10248 -4.14961 1.83037 2.11715 3.27409 3.33107 3.34549 3.75830 3.91413 4.37171 4.83724 4.96152 5.13522 5.25070 5.25822 5.32405 5.49059 5.58254 5.73904 6.05536 6.25726 6.35889 6.47324 6.70400 6.83648 7.46305 7.51794 7.61405 7.76434 7.86678 8.24042 8.70167 8.91199 9.50163 11.00568 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.053870 B = 0.006856 C = 0.006565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.641383 B = 4083.059768 C = 4263.962394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.399 5.399 3 C 0.217 3.783 4 C -0.064 4.064 5 C 0.030 3.970 6 C -0.527 4.527 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.892 5.892 10 Si 0.895 3.105 11 H -0.275 1.275 12 H -0.287 1.287 13 H -0.277 1.277 14 C -0.369 4.369 15 C 0.533 3.467 16 O -0.573 6.573 17 N -0.430 5.430 18 C 0.106 3.894 19 H 0.072 0.928 20 H 0.073 0.927 21 H 0.098 0.902 22 H 0.069 0.931 23 H 0.089 0.911 24 H 0.025 0.975 25 H 0.017 0.983 26 H 0.263 0.737 27 H 0.157 0.843 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.889 -8.223 7.604 11.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.193 5.193 3 C 0.101 3.899 4 C -0.103 4.103 5 C -0.007 4.007 6 C -0.566 4.566 7 H 0.077 0.923 8 C -0.142 4.142 9 N -0.530 5.530 10 Si 0.722 3.278 11 H -0.201 1.201 12 H -0.213 1.213 13 H -0.202 1.202 14 C -0.399 4.399 15 C 0.333 3.667 16 O -0.455 6.455 17 N -0.252 5.252 18 C -0.035 4.035 19 H 0.090 0.910 20 H 0.092 0.908 21 H 0.117 0.883 22 H 0.088 0.912 23 H 0.107 0.893 24 H 0.044 0.956 25 H 0.035 0.965 26 H 0.072 0.928 27 H 0.175 0.825 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.683 -8.902 7.407 12.152 hybrid contribution -0.532 0.860 -0.230 1.037 sum -4.214 -8.042 7.177 11.573 Atomic orbital electron populations 1.21911 0.74161 1.04038 1.03580 1.46329 1.03105 0.97196 1.72700 1.21604 0.89957 0.89116 0.89196 1.20860 1.01248 0.85099 1.03091 1.19077 0.97641 0.96177 0.87811 1.21118 1.45264 0.97191 0.92982 0.92347 1.25015 0.95499 0.98144 0.95574 1.69959 1.48251 1.37046 0.97772 0.86615 0.79273 0.84827 0.77046 1.20082 1.21273 1.20211 1.21602 0.96907 0.94553 1.26879 1.17044 0.80384 0.90142 0.79116 1.90788 1.33052 1.63866 1.57757 1.48374 1.03848 0.99260 1.73733 1.21689 1.01199 0.78064 1.02592 0.90971 0.90794 0.88344 0.91232 0.89263 0.95617 0.96451 0.92750 0.82523 0.91893 0.89008 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.20 10.88 59.85 0.65 1.85 16 2 N -0.40 -6.35 4.06 -63.60 -0.26 -6.61 16 3 C 0.22 3.93 6.19 -81.68 -0.51 3.42 16 4 C -0.06 -1.18 5.32 -27.88 -0.15 -1.33 16 5 C 0.03 0.72 4.95 -27.89 -0.14 0.59 16 6 C -0.53 -13.81 9.11 -34.44 -0.31 -14.12 16 7 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.89 -25.75 13.29 55.43 0.74 -25.02 16 10 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 14 C -0.37 -7.19 10.73 -39.56 -0.42 -7.62 16 15 C 0.53 10.81 7.95 -14.98 -0.12 10.69 16 16 O -0.57 -13.17 17.88 5.12 0.09 -13.08 16 17 N -0.43 -7.16 4.02 -70.06 -0.28 -7.44 16 18 C 0.11 1.23 10.99 59.85 0.66 1.89 16 19 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 20 H 0.07 0.62 7.13 -51.93 -0.37 0.25 16 21 H 0.10 1.04 7.15 -51.93 -0.37 0.67 16 22 H 0.07 1.14 7.24 -51.93 -0.38 0.77 16 23 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 24 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.16 2.91 8.06 -52.49 -0.42 2.49 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 1.04 8.09 -51.93 -0.42 0.62 16 30 H 0.07 0.62 7.13 -51.93 -0.37 0.25 16 LS Contribution 263.24 15.07 3.97 3.97 Total: -1.00 -33.30 263.24 -5.19 -38.49 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: -3.99 Total: -2.78 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -0.44 Total: -3.10 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.20 Total: -39.07 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.09 Total: -13.08 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -33.30 -5.19 -38.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260809464.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.980 kcal (2) G-P(sol) polarization free energy of solvation -33.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds