Wall clock time and date at job start Mon Mar 30 2020 02:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36595 * 125.91037 * 2 1 4 4 C 1.50701 * 125.77582 * 359.94096 * 3 2 1 5 5 C 1.52997 * 109.47212 * 275.00231 * 4 3 2 6 6 C 1.50697 * 109.47466 * 179.97438 * 5 4 3 7 7 H 1.08001 * 119.99890 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00428 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99563 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00432 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46756 * 59.99920 * 10 8 6 12 12 H 1.48490 * 109.47381 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47117 * 300.00527 * 10 8 6 14 14 C 1.34828 * 108.45315 * 180.20902 * 3 2 1 15 15 C 1.41476 * 108.08210 * 359.61158 * 14 3 2 16 16 O 1.21779 * 126.19645 * 180.15327 * 15 14 3 17 17 N 1.34879 * 107.61306 * 0.38725 * 15 14 3 18 18 C 1.46498 * 126.16462 * 179.78764 * 17 15 14 19 19 H 1.08997 * 109.47480 * 90.00449 * 1 2 3 20 20 H 1.09007 * 109.46912 * 210.00371 * 1 2 3 21 21 H 1.09003 * 109.46864 * 329.99960 * 1 2 3 22 22 H 1.09002 * 109.47060 * 35.00286 * 4 3 2 23 23 H 1.09001 * 109.47380 * 155.00374 * 4 3 2 24 24 H 1.09002 * 109.47153 * 299.99998 * 5 4 3 25 25 H 1.08998 * 109.47533 * 59.99628 * 5 4 3 26 26 H 0.97002 * 119.99731 * 180.02562 * 9 8 6 27 27 H 1.07994 * 125.95955 * 179.72296 * 14 3 2 28 28 H 1.09002 * 109.47052 * 269.97736 * 18 17 15 29 29 H 1.08997 * 109.47303 * 29.97550 * 18 17 15 30 30 H 1.09001 * 109.46594 * 149.97596 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2662 1.1063 0.0000 4 6 1.7926 2.5370 -0.0013 5 6 1.5142 2.9808 -1.4387 6 6 1.0401 4.4112 -1.4400 7 1 0.9471 4.9501 -0.5087 8 6 0.7260 5.0324 -2.6302 9 7 0.8397 4.3764 -3.7643 10 14 0.1376 6.8053 -2.6317 11 1 1.1851 7.6750 -2.0386 12 1 -0.1314 7.2365 -4.0269 13 1 -1.1080 6.9142 -1.8305 14 6 3.5523 0.7019 -0.0047 15 6 3.5678 -0.7128 0.0014 16 8 4.5584 -1.4212 0.0021 17 7 2.2868 -1.1350 0.0009 18 6 1.8359 -2.5288 0.0017 19 1 -0.3634 -0.0001 -1.0276 20 1 -0.3633 -0.8900 0.5139 21 1 -0.3633 0.8900 0.5139 22 1 0.8788 2.6178 0.5874 23 1 2.5623 3.1749 0.4332 24 1 2.4280 2.9000 -2.0274 25 1 0.7446 2.3430 -1.8733 26 1 0.6191 4.8135 -4.6017 27 1 4.4195 1.3455 -0.0101 28 1 1.7243 -2.8752 -1.0258 29 1 2.5707 -3.1481 0.5160 30 1 0.8772 -2.6002 0.5153 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260809464.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:41 Heat of formation + Delta-G solvation = 11.997721 kcal Electronic energy + Delta-G solvation = -13680.347179 eV Core-core repulsion = 11284.032898 eV Total energy + Delta-G solvation = -2396.314281 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.53323 -38.40644 -36.14766 -34.57608 -33.05424 -32.39689 -28.52245 -27.04062 -26.08870 -23.42984 -22.02976 -20.57553 -18.60092 -18.16864 -17.30651 -16.51725 -16.46998 -16.22468 -14.93885 -14.79963 -14.66246 -14.31133 -14.19598 -13.97516 -13.51306 -13.30353 -13.16316 -12.77017 -12.64264 -12.30405 -11.85500 -11.60825 -11.30616 -10.85962 -10.51405 -10.04761 -8.74876 -8.16327 -6.27672 0.57276 0.68672 1.47117 1.49284 1.56697 2.22714 2.45720 2.71182 3.18704 3.63298 3.94760 4.14498 4.30318 4.32663 4.43307 4.60021 4.68079 4.72605 4.79357 4.89754 4.94864 5.12210 5.36200 5.52907 5.66725 5.84893 6.15549 6.22823 6.40573 6.89436 7.22649 7.42472 8.95077 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.053870 B = 0.006856 C = 0.006565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.641383 B = 4083.059768 C = 4263.962394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.388 5.388 3 C 0.219 3.781 4 C -0.048 4.048 5 C 0.037 3.963 6 C -0.538 4.538 7 H 0.073 0.927 8 C 0.002 3.998 9 N -0.935 5.935 10 Si 0.963 3.037 11 H -0.269 1.269 12 H -0.291 1.291 13 H -0.262 1.262 14 C -0.397 4.397 15 C 0.512 3.488 16 O -0.616 6.616 17 N -0.425 5.425 18 C 0.095 3.905 19 H 0.070 0.930 20 H 0.114 0.886 21 H 0.113 0.887 22 H 0.099 0.901 23 H 0.096 0.904 24 H -0.013 1.013 25 H 0.001 0.999 26 H 0.262 0.738 27 H 0.153 0.847 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.970 -7.946 8.944 13.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.181 5.181 3 C 0.100 3.900 4 C -0.086 4.086 5 C 0.000 4.000 6 C -0.576 4.576 7 H 0.091 0.909 8 C -0.196 4.196 9 N -0.575 5.575 10 Si 0.788 3.212 11 H -0.194 1.194 12 H -0.217 1.217 13 H -0.186 1.186 14 C -0.427 4.427 15 C 0.313 3.687 16 O -0.502 6.502 17 N -0.245 5.245 18 C -0.044 4.044 19 H 0.089 0.911 20 H 0.133 0.867 21 H 0.131 0.869 22 H 0.117 0.883 23 H 0.115 0.885 24 H 0.006 0.994 25 H 0.019 0.981 26 H 0.071 0.929 27 H 0.170 0.830 28 H 0.091 0.909 29 H 0.111 0.889 30 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.836 -8.655 8.771 13.634 hybrid contribution 0.037 0.725 -0.654 0.977 sum -5.799 -7.930 8.117 12.743 Atomic orbital electron populations 1.22362 0.71167 1.06852 1.04370 1.46768 1.04455 0.96466 1.70382 1.21433 0.89849 0.89667 0.89094 1.20610 1.02898 0.85257 0.99867 1.18884 0.95139 0.95413 0.90608 1.21617 1.44202 0.98275 0.93484 0.90879 1.25940 0.95817 1.02604 0.95282 1.70107 1.49888 1.39021 0.98452 0.85524 0.79293 0.79453 0.76922 1.19375 1.21675 1.18633 1.21713 0.97788 0.94804 1.28423 1.17149 0.81274 0.90321 0.79990 1.90740 1.34627 1.64632 1.60215 1.48527 1.03254 1.00935 1.71750 1.22102 1.03157 0.75128 1.03987 0.91127 0.86747 0.86872 0.88306 0.88522 0.99421 0.98061 0.92922 0.82978 0.90856 0.88887 0.86803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.77 10.88 127.77 1.39 3.16 16 2 N -0.39 -11.51 4.06 -355.14 -1.44 -12.95 16 3 C 0.22 7.71 6.19 41.03 0.25 7.97 16 4 C -0.05 -1.68 5.32 29.85 0.16 -1.52 16 5 C 0.04 1.77 4.95 29.85 0.15 1.92 16 6 C -0.54 -27.65 9.11 25.60 0.23 -27.42 16 7 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 8 C 0.00 0.08 5.46 84.65 0.46 0.55 16 9 N -0.93 -54.59 13.29 21.45 0.28 -54.31 16 10 Si 0.96 41.55 29.54 68.60 2.03 43.58 16 11 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 12 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 13 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 14 C -0.40 -15.72 10.73 22.28 0.24 -15.48 16 15 C 0.51 20.99 7.95 85.02 0.68 21.67 16 16 O -0.62 -29.16 17.88 -4.60 -0.08 -29.24 16 17 N -0.43 -13.49 4.02 -493.69 -1.98 -15.48 16 18 C 0.10 1.97 10.99 127.77 1.40 3.38 16 19 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 20 H 0.11 1.32 7.13 -2.38 -0.02 1.30 16 21 H 0.11 1.93 7.15 -2.39 -0.02 1.91 16 22 H 0.10 2.92 7.24 -2.39 -0.02 2.90 16 23 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 24 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 25 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 26 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 27 H 0.15 5.92 8.06 -2.91 -0.02 5.90 16 28 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.09 1.95 8.09 -2.39 -0.02 1.93 16 30 H 0.11 1.41 7.13 -2.39 -0.02 1.39 16 Total: -1.00 -73.40 263.24 4.89 -68.51 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: 1.12 Total: 5.68 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 4.97 Total: -5.79 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -3.14 Total: -82.73 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.08 Total: -29.24 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -73.40 4.89 -68.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260809464.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.505 kcal (2) G-P(sol) polarization free energy of solvation -73.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds