Wall clock time and date at job start Mon Mar 30 2020 02:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47293 * 2 1 4 4 C 1.52997 * 109.46745 * 119.99778 * 2 1 3 5 5 O 1.42905 * 109.46905 * 175.00067 * 4 2 1 6 6 C 1.36181 * 116.99876 * 180.02562 * 5 4 2 7 7 C 1.40503 * 126.05613 * 359.97438 * 6 5 4 8 8 N 1.30950 * 108.41658 * 180.02562 * 7 6 5 9 9 N 1.40082 * 108.35258 * 359.97438 * 8 7 6 10 10 C 1.37343 * 126.09534 * 179.97438 * 9 8 7 11 11 H 1.07996 * 119.99875 * 180.02562 * 10 9 8 12 12 C 1.38982 * 119.99724 * 0.02562 * 10 9 8 13 13 N 1.31299 * 120.00250 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99904 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46919 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47224 * 120.00365 * 14 12 10 17 17 H 1.48498 * 109.47013 * 240.00314 * 14 12 10 18 18 C 1.35501 * 126.05127 * 179.97438 * 6 5 4 19 19 H 1.09000 * 109.46794 * 300.00412 * 1 2 3 20 20 H 1.09000 * 109.46983 * 60.00100 * 1 2 3 21 21 H 1.08997 * 109.47180 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46794 * 239.99588 * 2 1 3 23 23 H 1.09000 * 109.47025 * 299.99875 * 3 2 1 24 24 H 1.09004 * 109.47260 * 59.99646 * 3 2 1 25 25 H 1.09002 * 109.47259 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47250 * 54.99920 * 4 2 1 27 27 H 1.09007 * 109.47487 * 294.99830 * 4 2 1 28 28 H 1.08007 * 125.79035 * 0.02562 * 7 6 5 29 29 H 0.96999 * 120.00454 * 180.02562 * 13 12 10 30 30 H 1.08002 * 126.23746 * 0.26079 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 3.4642 -0.8238 1.1921 6 6 4.0817 -1.4445 2.2351 7 6 3.4486 -1.9933 3.3630 8 7 4.3667 -2.5016 4.1463 9 7 5.6176 -2.2978 3.5498 10 6 6.8312 -2.6871 4.0616 11 1 7.7395 -2.4781 3.5160 12 6 6.8904 -3.3499 5.2818 13 7 5.7861 -3.6044 5.9449 14 14 8.5410 -3.8787 5.9784 15 1 9.6239 -3.4761 5.0453 16 1 8.7546 -3.2262 7.2950 17 1 8.5567 -5.3538 6.1486 18 6 5.4155 -1.6422 2.3689 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.6768 1.9563 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 3.1301 1.4424 0.0005 26 1 1.6053 -1.7197 1.2952 27 1 1.7516 -0.1582 2.1371 28 1 2.3852 -1.9955 3.5519 29 1 5.8273 -4.0667 6.7966 30 1 6.1799 -1.3333 1.6713 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260843851.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:04 Heat of formation + Delta-G solvation = 27.043679 kcal Electronic energy + Delta-G solvation = -13501.807664 eV Core-core repulsion = 11106.145824 eV Total energy + Delta-G solvation = -2395.661840 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.57266 -37.50127 -34.77319 -33.27829 -30.22138 -28.08518 -27.05460 -25.63740 -24.74041 -20.88375 -19.73778 -19.52273 -17.75012 -15.77522 -15.49348 -15.26107 -14.46660 -14.01702 -13.81581 -13.06421 -13.00428 -12.68698 -12.53567 -12.09899 -11.69049 -11.28009 -11.09701 -10.96125 -10.90599 -10.79205 -10.48606 -10.34147 -10.15198 -9.25179 -8.73626 -8.09424 -6.68653 -6.52676 -4.19779 2.98240 3.08115 3.13913 3.62844 3.80966 4.17954 4.25716 4.83459 5.01328 5.05429 5.06165 5.35111 5.64690 5.73508 5.74998 5.93496 5.95696 6.09625 6.14577 6.21200 6.41370 6.47947 6.66103 6.85247 7.04779 7.34096 7.61815 8.01294 8.56449 8.82038 9.41346 9.65305 10.44296 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.092715 B = 0.006117 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 301.927465 B = 4575.971710 C = 4785.032320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 C -0.143 4.143 4 C 0.077 3.923 5 O -0.314 6.314 6 C -0.069 4.069 7 C -0.108 4.108 8 N -0.246 5.246 9 N -0.143 5.143 10 C -0.320 4.320 11 H 0.118 0.882 12 C 0.045 3.955 13 N -0.776 5.776 14 Si 0.935 3.065 15 H -0.263 1.263 16 H -0.274 1.274 17 H -0.274 1.274 18 C -0.078 4.078 19 H 0.056 0.944 20 H 0.058 0.942 21 H 0.055 0.945 22 H 0.076 0.924 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.149 0.851 29 H 0.273 0.727 30 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.858 4.669 -6.902 9.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 C -0.201 4.201 4 C 0.001 3.999 5 O -0.228 6.228 6 C -0.125 4.125 7 C -0.282 4.282 8 N -0.081 5.081 9 N 0.084 4.916 10 C -0.452 4.452 11 H 0.135 0.865 12 C -0.171 4.171 13 N -0.404 5.404 14 Si 0.759 3.241 15 H -0.186 1.186 16 H -0.200 1.200 17 H -0.200 1.200 18 C -0.225 4.225 19 H 0.075 0.925 20 H 0.077 0.923 21 H 0.075 0.925 22 H 0.094 0.906 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.167 0.833 29 H 0.084 0.916 30 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.647 4.061 -5.803 8.471 hybrid contribution 0.272 0.105 -0.262 0.392 sum -4.374 4.166 -6.065 8.560 Atomic orbital electron populations 1.21768 0.94602 1.01888 1.01887 1.21089 0.95163 0.96875 0.98219 1.21778 1.02190 0.95160 1.00931 1.22451 0.81229 0.98978 0.97247 1.85765 1.19009 1.76287 1.41696 1.18226 0.91515 1.10570 0.92175 1.23569 0.99071 1.09339 0.96182 1.78114 0.86981 1.23613 1.19373 1.44496 1.05459 1.31402 1.10216 1.19929 0.82094 1.38158 1.05057 0.86479 1.25622 0.99303 0.96026 0.96153 1.70221 1.26936 1.30806 1.12440 0.85755 0.80420 0.78699 0.79224 1.18650 1.19959 1.19953 1.20934 0.94628 1.12086 0.94844 0.92538 0.92314 0.92543 0.90574 0.93211 0.92957 0.91701 0.93555 0.93491 0.83331 0.91643 0.83251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.19 37.16 0.34 -1.18 16 2 C -0.09 -1.26 3.16 -90.62 -0.29 -1.55 16 3 C -0.14 -1.82 9.09 37.15 0.34 -1.49 16 4 C 0.08 1.31 4.46 37.16 0.17 1.48 16 5 O -0.31 -6.73 9.76 -20.32 -0.20 -6.93 16 6 C -0.07 -1.71 6.97 -39.71 -0.28 -1.99 16 7 C -0.11 -2.79 11.09 -17.07 -0.19 -2.98 16 8 N -0.25 -7.20 10.41 30.78 0.32 -6.88 16 9 N -0.14 -4.08 3.74 -11.43 -0.04 -4.12 16 10 C -0.32 -8.72 10.25 -14.81 -0.15 -8.87 16 11 H 0.12 2.87 7.83 -52.49 -0.41 2.46 16 12 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 13 N -0.78 -21.88 11.82 55.49 0.66 -21.22 16 14 Si 0.94 19.21 29.55 -169.99 -5.02 14.19 16 15 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 16 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 17 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 18 C -0.08 -2.01 11.49 -16.42 -0.19 -2.20 16 19 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 20 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.93 7.82 -51.93 -0.41 0.53 16 26 H 0.05 0.77 8.10 -51.93 -0.42 0.35 16 27 H 0.05 0.79 8.10 -51.92 -0.42 0.37 16 28 H 0.15 3.34 7.70 -52.48 -0.40 2.94 16 29 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.15 3.38 8.06 -52.49 -0.42 2.96 16 LS Contribution 262.56 15.07 3.96 3.96 Total: -1.00 -31.34 262.56 -4.83 -36.17 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -4.16 Total: 2.52 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -0.34 Total: -17.69 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 0.93 Total: -32.22 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.20 Total: -6.93 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.34 -4.83 -36.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260843851.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.214 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds