Wall clock time and date at job start Mon Mar 30 2020 02:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47293 * 2 1 4 4 C 1.52997 * 109.46745 * 119.99778 * 2 1 3 5 5 O 1.42905 * 109.46905 * 175.00067 * 4 2 1 6 6 C 1.36181 * 116.99876 * 180.02562 * 5 4 2 7 7 C 1.40503 * 126.05613 * 359.97438 * 6 5 4 8 8 N 1.30950 * 108.41658 * 180.02562 * 7 6 5 9 9 N 1.40082 * 108.35258 * 359.97438 * 8 7 6 10 10 C 1.37343 * 126.09534 * 179.97438 * 9 8 7 11 11 H 1.07996 * 119.99875 * 180.02562 * 10 9 8 12 12 C 1.38982 * 119.99724 * 0.02562 * 10 9 8 13 13 N 1.31299 * 120.00250 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99904 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46919 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47224 * 120.00365 * 14 12 10 17 17 H 1.48498 * 109.47013 * 240.00314 * 14 12 10 18 18 C 1.35501 * 126.05127 * 179.97438 * 6 5 4 19 19 H 1.09000 * 109.46794 * 300.00412 * 1 2 3 20 20 H 1.09000 * 109.46983 * 60.00100 * 1 2 3 21 21 H 1.08997 * 109.47180 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46794 * 239.99588 * 2 1 3 23 23 H 1.09000 * 109.47025 * 299.99875 * 3 2 1 24 24 H 1.09004 * 109.47260 * 59.99646 * 3 2 1 25 25 H 1.09002 * 109.47259 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47250 * 54.99920 * 4 2 1 27 27 H 1.09007 * 109.47487 * 294.99830 * 4 2 1 28 28 H 1.08007 * 125.79035 * 0.02562 * 7 6 5 29 29 H 0.96999 * 120.00454 * 180.02562 * 13 12 10 30 30 H 1.08002 * 126.23746 * 0.26079 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 3.4642 -0.8238 1.1921 6 6 4.0817 -1.4445 2.2351 7 6 3.4486 -1.9933 3.3630 8 7 4.3667 -2.5016 4.1463 9 7 5.6176 -2.2978 3.5498 10 6 6.8312 -2.6871 4.0616 11 1 7.7395 -2.4781 3.5160 12 6 6.8904 -3.3499 5.2818 13 7 5.7861 -3.6044 5.9449 14 14 8.5410 -3.8787 5.9784 15 1 9.6239 -3.4761 5.0453 16 1 8.7546 -3.2262 7.2950 17 1 8.5567 -5.3538 6.1486 18 6 5.4155 -1.6422 2.3689 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.6768 1.9563 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 3.1301 1.4424 0.0005 26 1 1.6053 -1.7197 1.2952 27 1 1.7516 -0.1582 2.1371 28 1 2.3852 -1.9955 3.5519 29 1 5.8273 -4.0667 6.7966 30 1 6.1799 -1.3333 1.6713 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260843851.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:04 Heat of formation + Delta-G solvation = 7.483388 kcal Electronic energy + Delta-G solvation = -13502.655862 eV Core-core repulsion = 11106.145824 eV Total energy + Delta-G solvation = -2396.510038 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.54199 -39.08949 -36.07463 -35.19991 -32.26914 -29.96580 -27.99955 -27.15354 -26.64148 -22.71742 -21.48869 -20.99655 -19.64040 -17.68590 -17.13377 -16.86056 -15.94804 -15.62474 -15.34143 -14.97076 -14.62850 -14.13692 -13.66707 -13.51932 -13.01106 -12.88665 -12.84591 -12.66967 -12.22557 -12.04164 -11.94225 -11.60924 -11.51505 -11.13734 -10.75204 -10.16694 -8.64874 -8.48633 -6.25876 1.27787 1.40599 1.59817 1.73972 2.08821 2.26514 2.53673 2.96397 3.06271 3.91662 3.98509 4.22519 4.26181 4.52137 4.62380 4.66340 4.79076 4.84715 4.90228 5.01365 5.05703 5.10776 5.21595 5.36648 5.42556 5.46270 5.71695 6.03465 6.62917 6.96591 7.41440 7.60765 8.51717 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.092715 B = 0.006117 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 301.927465 B = 4575.971710 C = 4785.032320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 C -0.142 4.142 4 C 0.068 3.932 5 O -0.320 6.320 6 C -0.062 4.062 7 C -0.115 4.115 8 N -0.294 5.294 9 N -0.165 5.165 10 C -0.354 4.354 11 H 0.137 0.863 12 C -0.004 4.004 13 N -0.825 5.825 14 Si 1.021 2.979 15 H -0.244 1.244 16 H -0.270 1.270 17 H -0.270 1.270 18 C -0.094 4.094 19 H 0.060 0.940 20 H 0.079 0.921 21 H 0.059 0.941 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.053 0.947 25 H 0.042 0.958 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.173 0.827 29 H 0.278 0.722 30 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.657 5.106 -7.714 10.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 C -0.200 4.200 4 C -0.008 4.008 5 O -0.233 6.233 6 C -0.118 4.118 7 C -0.288 4.288 8 N -0.129 5.129 9 N 0.062 4.938 10 C -0.485 4.485 11 H 0.154 0.846 12 C -0.216 4.216 13 N -0.453 5.453 14 Si 0.839 3.161 15 H -0.167 1.167 16 H -0.195 1.195 17 H -0.195 1.195 18 C -0.240 4.240 19 H 0.079 0.921 20 H 0.098 0.902 21 H 0.078 0.922 22 H 0.094 0.906 23 H 0.093 0.907 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.190 0.810 29 H 0.088 0.912 30 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -4.465 4.515 -6.644 9.190 hybrid contribution 0.091 0.033 -0.104 0.142 sum -4.374 4.547 -6.748 9.238 Atomic orbital electron populations 1.21751 0.92091 1.02611 1.03176 1.21135 0.97064 0.96621 0.96078 1.21775 1.00773 0.95088 1.02320 1.22840 0.78750 0.99721 0.99453 1.85783 1.21603 1.75594 1.40353 1.18331 0.91463 1.09616 0.92402 1.23984 0.99890 1.08730 0.96169 1.78014 0.88073 1.25524 1.21303 1.44789 1.05600 1.32334 1.11066 1.20648 0.82575 1.39074 1.06222 0.84610 1.26850 1.03732 0.95138 0.95859 1.70370 1.29941 1.31862 1.13141 0.84516 0.75047 0.78100 0.78409 1.16718 1.19494 1.19483 1.21505 0.95976 1.11798 0.94730 0.92122 0.90174 0.92165 0.90628 0.90663 0.92782 0.93894 0.93399 0.93442 0.80987 0.91231 0.80849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.19 71.98 0.66 -1.88 16 2 C -0.09 -2.23 3.16 -10.79 -0.03 -2.26 16 3 C -0.14 -3.35 9.09 71.98 0.65 -2.69 16 4 C 0.07 2.23 4.46 71.98 0.32 2.55 16 5 O -0.32 -13.50 9.76 -95.61 -0.93 -14.44 16 6 C -0.06 -3.08 6.97 22.19 0.15 -2.92 16 7 C -0.11 -5.95 11.09 85.38 0.95 -5.00 16 8 N -0.29 -17.58 10.41 -56.54 -0.59 -18.17 16 9 N -0.16 -9.53 3.74 -190.08 -0.71 -10.24 16 10 C -0.35 -19.41 10.25 84.01 0.86 -18.55 16 11 H 0.14 6.60 7.83 -2.91 -0.02 6.58 16 12 C 0.00 -0.23 5.50 84.95 0.47 0.24 16 13 N -0.82 -47.37 11.82 21.66 0.26 -47.12 16 14 Si 1.02 38.98 29.55 68.60 2.03 41.01 16 15 H -0.24 -8.50 7.11 99.48 0.71 -7.80 16 16 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 17 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 18 C -0.09 -4.84 11.49 83.32 0.96 -3.88 16 19 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 20 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 21 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 22 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.04 1.19 7.82 -2.39 -0.02 1.17 16 26 H 0.05 1.55 8.10 -2.39 -0.02 1.53 16 27 H 0.05 1.55 8.10 -2.38 -0.02 1.53 16 28 H 0.17 7.73 7.70 -2.91 -0.02 7.71 16 29 H 0.28 14.52 8.31 -92.71 -0.77 13.75 16 30 H 0.17 7.78 8.06 -2.91 -0.02 7.76 16 Total: -1.00 -68.28 262.56 6.15 -62.13 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 1.11 Total: 21.24 kcal Atomic # 6 Polarization: -39.40 SS G_CDS: 4.99 Total: -34.41 kcal Atomic # 7 Polarization: -74.49 SS G_CDS: -1.04 Total: -75.53 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.93 Total: -14.44 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -68.28 6.15 -62.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260843851.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.614 kcal (2) G-P(sol) polarization free energy of solvation -68.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds