Wall clock time and date at job start Mon Mar 30 2020 02:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00223 * 2 1 4 4 H 1.48501 * 109.47303 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47057 * 299.99792 * 3 2 1 6 6 H 1.48495 * 109.47249 * 59.99983 * 3 2 1 7 7 C 1.37883 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99867 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00012 * 0.02562 * 7 2 1 10 10 O 1.42905 * 110.05968 * 330.77685 * 9 7 2 11 11 C 1.54447 * 110.07932 * 209.27080 * 9 7 2 12 12 C 1.55094 * 104.13803 * 217.20131 * 11 9 7 13 13 C 1.55028 * 102.84386 * 37.60185 * 12 11 9 14 14 C 1.53241 * 110.08505 * 92.29269 * 9 7 2 15 15 C 1.53633 * 110.59596 * 359.05478 * 14 9 7 16 16 C 1.55037 * 104.03616 * 215.87313 * 15 14 9 17 17 C 1.54946 * 102.83244 * 37.39211 * 16 15 14 18 18 C 1.53246 * 110.80175 * 240.24300 * 14 9 7 19 19 H 0.97002 * 119.99823 * 0.02562 * 1 2 3 20 20 H 0.96695 * 114.00195 * 300.70034 * 10 9 7 21 21 H 1.08997 * 110.48051 * 335.86932 * 11 9 7 22 22 H 1.08999 * 110.48467 * 98.50548 * 11 9 7 23 23 H 1.09006 * 110.74527 * 279.25974 * 12 11 9 24 24 H 1.08996 * 110.88254 * 156.01135 * 12 11 9 25 25 H 1.08993 * 110.52073 * 203.95293 * 13 12 11 26 26 H 1.09011 * 110.51675 * 81.22609 * 13 12 11 27 27 H 1.08998 * 110.51636 * 334.51688 * 15 14 9 28 28 H 1.09007 * 110.51106 * 97.23904 * 15 14 9 29 29 H 1.08997 * 110.74736 * 279.05401 * 16 15 14 30 30 H 1.09009 * 110.89112 * 155.79741 * 16 15 14 31 31 H 1.08999 * 110.48107 * 203.72260 * 17 16 15 32 32 H 1.09002 * 110.48611 * 81.08762 * 17 16 15 33 33 H 1.09001 * 110.08371 * 239.83446 * 18 14 9 34 34 H 1.09000 * 110.08532 * 1.39710 * 18 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 -0.0088 -2.3377 0.6554 11 6 2.0815 -3.5909 0.7103 12 6 1.7973 -4.8762 -0.1098 13 6 1.7327 -4.3485 -1.5661 14 6 1.0383 -2.9840 -1.4375 15 6 1.6353 -1.9836 -2.4390 16 6 0.6532 -2.0204 -3.6381 17 6 -0.7266 -2.1666 -2.9483 18 6 -0.4558 -3.1082 -1.7546 19 1 -0.4850 0.8401 -0.0004 20 1 0.0601 -2.0442 1.5741 21 1 3.1427 -3.3442 0.6781 22 1 1.7486 -3.7137 1.7410 23 1 0.8450 -5.3185 0.1831 24 1 2.6072 -5.5968 0.0041 25 1 1.1429 -5.0200 -2.1900 26 1 2.7365 -4.2293 -1.9742 27 1 1.6715 -0.9843 -2.0053 28 1 2.6302 -2.3023 -2.7502 29 1 0.8575 -2.8785 -4.2783 30 1 0.7027 -1.0935 -4.2097 31 1 -1.4488 -2.6142 -3.6311 32 1 -1.0820 -1.1979 -2.5970 33 1 -0.6966 -4.1359 -2.0265 34 1 -1.0482 -2.8000 -0.8930 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260897399.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:29 Heat of formation + Delta-G solvation = -57.099245 kcal Electronic energy + Delta-G solvation = -15453.468177 eV Core-core repulsion = 13157.697969 eV Total energy + Delta-G solvation = -2295.770207 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.02210 -34.80391 -33.21926 -31.91042 -28.01498 -27.63323 -27.00580 -23.97772 -21.60125 -19.80577 -19.59229 -17.43747 -16.41852 -14.90305 -14.59999 -14.36275 -14.07787 -13.79141 -12.84336 -12.29057 -11.94678 -11.84356 -11.65981 -11.05598 -10.88001 -10.67792 -10.29686 -10.21528 -10.01713 -9.96041 -9.68951 -9.65161 -9.55048 -9.29734 -9.04350 -8.55485 -8.34608 -7.92379 -5.81610 -3.98579 3.28140 3.38236 3.41337 4.43423 5.28310 5.54400 5.62962 5.66908 5.95240 5.99159 6.03144 6.24180 6.46348 6.49376 6.51309 6.62981 6.65370 6.72051 6.76769 6.86996 6.88502 6.96650 7.06750 7.12326 7.22620 7.38924 7.46616 7.78004 7.87156 7.98558 8.02493 8.34485 8.90435 9.52154 9.76051 11.09781 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.029479 B = 0.016298 C = 0.013469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.587098 B = 1717.590011 C = 2078.322986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.078 3.922 3 Si 0.869 3.131 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.547 4.547 8 H 0.055 0.945 9 C 0.257 3.743 10 O -0.532 6.532 11 C -0.147 4.147 12 C -0.123 4.123 13 C -0.114 4.114 14 C -0.038 4.038 15 C -0.104 4.104 16 C -0.128 4.128 17 C -0.113 4.113 18 C -0.102 4.102 19 H 0.253 0.747 20 H 0.347 0.653 21 H 0.056 0.944 22 H 0.047 0.953 23 H 0.056 0.944 24 H 0.044 0.956 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.111 0.889 28 H 0.036 0.964 29 H 0.043 0.957 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.068 0.932 33 H 0.029 0.971 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.023 -4.746 -2.255 5.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.128 4.128 3 Si 0.697 3.303 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.585 4.585 8 H 0.073 0.927 9 C 0.217 3.783 10 O -0.335 6.335 11 C -0.185 4.185 12 C -0.160 4.160 13 C -0.151 4.151 14 C -0.039 4.039 15 C -0.141 4.141 16 C -0.166 4.166 17 C -0.151 4.151 18 C -0.139 4.139 19 H 0.063 0.937 20 H 0.192 0.808 21 H 0.075 0.925 22 H 0.066 0.934 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.129 0.871 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.048 0.952 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.616 -4.823 -2.848 5.635 hybrid contribution 0.853 1.098 0.423 1.454 sum 1.469 -3.725 -2.426 4.682 Atomic orbital electron populations 1.70239 1.05057 1.25021 1.47016 1.24983 0.94743 0.98135 0.94923 0.86919 0.80590 0.85168 0.77636 1.19869 1.21024 1.21127 1.21545 0.93019 0.90974 1.52967 0.92721 1.19094 0.81079 0.90499 0.87657 1.86325 1.30036 1.89421 1.27719 1.23242 1.00904 0.96198 0.98149 1.22492 0.99647 0.97417 0.96488 1.22541 0.99522 0.97177 0.95866 1.21218 0.93858 0.92131 0.96651 1.22699 0.94817 1.03712 0.92903 1.22563 0.97222 0.98852 0.97934 1.22267 0.95689 1.00585 0.96553 1.22005 0.97416 0.95839 0.98632 0.93704 0.80764 0.92523 0.93426 0.92531 0.93721 0.93280 0.92774 0.87145 0.94564 0.93823 0.93533 0.94470 0.91361 0.95236 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.41 11.51 55.43 0.64 -21.78 16 2 C 0.08 2.02 4.16 -17.82 -0.07 1.95 16 3 Si 0.87 20.37 29.54 -169.99 -5.02 15.35 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.55 -14.04 5.94 -34.44 -0.20 -14.24 16 8 H 0.05 1.44 7.62 -52.49 -0.40 1.04 16 9 C 0.26 6.06 1.10 -90.89 -0.10 5.96 16 10 O -0.53 -13.05 8.16 -35.23 -0.29 -13.34 16 11 C -0.15 -3.08 6.11 -24.87 -0.15 -3.23 16 12 C -0.12 -2.30 6.92 -24.55 -0.17 -2.47 16 13 C -0.11 -2.20 5.90 -25.33 -0.15 -2.35 16 14 C -0.04 -0.83 0.81 -153.60 -0.12 -0.96 16 15 C -0.10 -2.32 5.28 -25.33 -0.13 -2.46 16 16 C -0.13 -2.55 6.91 -24.63 -0.17 -2.72 16 17 C -0.11 -2.34 6.84 -24.95 -0.17 -2.51 16 18 C -0.10 -2.22 5.99 -25.85 -0.15 -2.38 16 19 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 20 H 0.35 8.25 9.02 45.56 0.41 8.66 16 21 H 0.06 1.19 7.72 -51.93 -0.40 0.79 16 22 H 0.05 0.96 8.06 -51.93 -0.42 0.54 16 23 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 24 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.89 7.35 -51.93 -0.38 0.51 16 26 H 0.05 1.02 7.41 -51.92 -0.38 0.63 16 27 H 0.11 2.79 4.74 -51.93 -0.25 2.54 16 28 H 0.04 0.76 7.38 -51.93 -0.38 0.37 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 33 H 0.03 0.59 7.25 -51.93 -0.38 0.21 16 34 H 0.10 2.39 5.69 -51.93 -0.30 2.09 16 LS Contribution 255.90 15.07 3.86 3.86 Total: -1.00 -26.21 255.90 -6.97 -33.17 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -4.55 Total: 8.14 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: -1.60 Total: -25.41 kcal Atomic # 7 Polarization: -22.41 SS G_CDS: 0.64 Total: -21.78 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.29 Total: -13.34 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -26.21 -6.97 -33.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260897399.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.928 kcal (2) G-P(sol) polarization free energy of solvation -26.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds