Wall clock time and date at job start Mon Mar 30 2020 02:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99893 * 2 1 4 4 H 1.48503 * 109.46943 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47336 * 299.99878 * 3 2 1 6 6 H 1.48508 * 109.47060 * 60.00282 * 3 2 1 7 7 C 1.37880 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99691 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00285 * 0.02562 * 7 2 1 10 10 O 1.42906 * 110.08020 * 30.81442 * 9 7 2 11 11 C 1.54510 * 110.10592 * 152.38222 * 9 7 2 12 12 C 1.54981 * 104.21881 * 95.75729 * 11 9 7 13 13 C 1.55103 * 102.86615 * 37.44142 * 12 11 9 14 14 C 1.52957 * 110.15524 * 269.21358 * 9 7 2 15 15 C 1.53964 * 110.93494 * 2.26629 * 14 9 7 16 16 C 1.55059 * 102.67647 * 157.41103 * 15 14 9 17 17 C 1.54343 * 104.31222 * 323.03456 * 16 15 14 18 18 C 1.53323 * 111.31729 * 119.15195 * 14 9 7 19 19 H 0.97000 * 119.99962 * 359.97438 * 1 2 3 20 20 H 0.96704 * 114.00091 * 60.11741 * 10 9 7 21 21 H 1.08996 * 110.48535 * 337.07555 * 11 9 7 22 22 H 1.08995 * 110.48907 * 214.44202 * 11 9 7 23 23 H 1.08995 * 110.73094 * 279.09454 * 12 11 9 24 24 H 1.09002 * 110.73120 * 155.78634 * 12 11 9 25 25 H 1.08997 * 110.53088 * 81.47490 * 13 12 11 26 26 H 1.09004 * 110.52838 * 204.23574 * 13 12 11 27 27 H 1.08997 * 110.76512 * 275.70615 * 15 14 9 28 28 H 1.09001 * 110.77115 * 39.11433 * 15 14 9 29 29 H 1.08999 * 110.46724 * 204.32229 * 16 15 14 30 30 H 1.09000 * 110.57153 * 81.79735 * 16 15 14 31 31 H 1.09003 * 110.03491 * 264.15045 * 17 16 15 32 32 H 1.09003 * 110.03415 * 142.71071 * 17 16 15 33 33 H 1.08999 * 110.07952 * 336.29460 * 18 14 9 34 34 H 1.09004 * 110.07953 * 97.79241 * 18 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 8 0.0078 -2.3480 -0.6875 11 6 2.0993 -3.6021 -0.6715 12 6 2.7973 -4.3196 0.5117 13 6 1.7023 -4.3194 1.6102 14 6 1.0042 -2.9652 1.4363 15 6 1.5462 -1.9394 2.4485 16 6 0.7227 -2.2526 3.7245 17 6 -0.6816 -2.6111 3.1938 18 6 -0.4954 -3.0755 1.7364 19 1 -0.4850 0.8400 0.0004 20 1 0.1000 -2.0798 -1.6121 21 1 2.8388 -3.1607 -1.3396 22 1 1.4596 -4.2972 -1.2152 23 1 3.6732 -3.7599 0.8397 24 1 3.0696 -5.3390 0.2383 25 1 0.9986 -5.1359 1.4485 26 1 2.1536 -4.3926 2.5997 27 1 2.6099 -2.0971 2.6266 28 1 1.3571 -0.9218 2.1066 29 1 0.6736 -1.3765 4.3711 30 1 1.1544 -3.0974 4.2612 31 1 -1.3283 -1.7343 3.2268 32 1 -1.1119 -3.4158 3.7901 33 1 -1.0601 -2.4305 1.0632 34 1 -0.8238 -4.1091 1.6271 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260897402.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:30 Heat of formation + Delta-G solvation = -62.059169 kcal Electronic energy + Delta-G solvation = -15422.100749 eV Core-core repulsion = 13126.115463 eV Total energy + Delta-G solvation = -2295.985286 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.04575 -34.89770 -33.19994 -31.93171 -27.78732 -27.65248 -27.13266 -24.07708 -21.84620 -19.81014 -19.26771 -17.41528 -16.68771 -14.85215 -14.67647 -14.40646 -13.94229 -13.60440 -12.93470 -12.48038 -12.12471 -11.89576 -11.50837 -10.90651 -10.87134 -10.73333 -10.34080 -10.17678 -10.16557 -9.98850 -9.77953 -9.64522 -9.57521 -9.30421 -9.07554 -8.60166 -8.34788 -7.90808 -5.81725 -3.99161 3.28730 3.38730 3.41893 4.44507 5.29806 5.51795 5.65018 5.66563 5.88522 5.94518 5.95071 6.23360 6.46453 6.47260 6.51997 6.56594 6.65213 6.66654 6.72307 6.82545 6.88963 6.94439 7.01683 7.12936 7.14830 7.39629 7.43682 7.73916 7.88562 7.95631 7.98724 8.36087 8.92304 9.53115 9.76005 11.11240 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.028711 B = 0.016064 C = 0.013599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.017357 B = 1742.634874 C = 2058.427570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.078 3.922 3 Si 0.870 3.130 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.546 4.546 8 H 0.054 0.946 9 C 0.258 3.742 10 O -0.535 6.535 11 C -0.152 4.152 12 C -0.117 4.117 13 C -0.112 4.112 14 C -0.037 4.037 15 C -0.086 4.086 16 C -0.131 4.131 17 C -0.118 4.118 18 C -0.102 4.102 19 H 0.253 0.747 20 H 0.348 0.652 21 H 0.054 0.946 22 H 0.046 0.954 23 H 0.059 0.941 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.042 0.958 28 H 0.098 0.902 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.040 0.960 33 H 0.100 0.900 34 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.402 -4.853 2.666 5.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.127 4.127 3 Si 0.698 3.302 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.585 4.585 8 H 0.072 0.928 9 C 0.218 3.782 10 O -0.338 6.338 11 C -0.190 4.190 12 C -0.155 4.155 13 C -0.150 4.150 14 C -0.038 4.038 15 C -0.124 4.124 16 C -0.168 4.168 17 C -0.156 4.156 18 C -0.139 4.139 19 H 0.063 0.937 20 H 0.192 0.808 21 H 0.073 0.927 22 H 0.065 0.935 23 H 0.078 0.922 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.117 0.883 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.118 0.882 34 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 0.974 -4.911 3.266 5.978 hybrid contribution 0.852 1.103 -0.424 1.457 sum 1.826 -3.808 2.841 5.090 Atomic orbital electron populations 1.70227 1.05115 1.25072 1.47306 1.24969 0.94692 0.98165 0.94886 0.86902 0.80567 0.85130 0.77601 1.19892 1.21155 1.21054 1.21509 0.92944 0.90798 1.53234 0.92755 1.19083 0.81212 0.90590 0.87330 1.86399 1.30693 1.90639 1.26022 1.23280 0.99559 0.98888 0.97271 1.22354 0.98022 0.98267 0.96825 1.22390 0.97290 0.97779 0.97523 1.21205 0.93787 0.92321 0.96490 1.22428 0.96255 1.02186 0.91487 1.22508 0.96673 0.99007 0.98659 1.22137 0.96703 0.99297 0.97441 1.21968 0.97551 0.99367 0.95046 0.93692 0.80821 0.92695 0.93540 0.92185 0.93727 0.93027 0.93090 0.93930 0.88335 0.93462 0.93574 0.92884 0.94157 0.88186 0.94789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.75 11.60 55.43 0.64 -22.10 16 2 C 0.08 2.04 3.92 -17.82 -0.07 1.97 16 3 Si 0.87 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.55 -14.06 6.15 -34.44 -0.21 -14.28 16 8 H 0.05 1.43 7.81 -52.49 -0.41 1.02 16 9 C 0.26 6.11 1.08 -91.00 -0.10 6.02 16 10 O -0.54 -13.26 8.44 -35.23 -0.30 -13.55 16 11 C -0.15 -3.19 6.11 -24.89 -0.15 -3.34 16 12 C -0.12 -2.21 6.92 -24.57 -0.17 -2.38 16 13 C -0.11 -2.17 5.76 -25.44 -0.15 -2.32 16 14 C -0.04 -0.82 0.72 -153.68 -0.11 -0.93 16 15 C -0.09 -1.91 4.65 -25.14 -0.12 -2.03 16 16 C -0.13 -2.52 6.60 -24.94 -0.16 -2.69 16 17 C -0.12 -2.32 6.82 -25.46 -0.17 -2.49 16 18 C -0.10 -2.23 5.61 -25.99 -0.15 -2.38 16 19 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 20 H 0.35 8.26 9.07 45.56 0.41 8.67 16 21 H 0.05 1.16 7.84 -51.93 -0.41 0.75 16 22 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 23 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.96 7.47 -51.93 -0.39 0.57 16 26 H 0.05 0.92 7.49 -51.93 -0.39 0.53 16 27 H 0.04 0.91 8.00 -51.93 -0.42 0.49 16 28 H 0.10 2.50 5.42 -51.93 -0.28 2.22 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.81 7.92 -51.93 -0.41 0.40 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 2.51 6.32 -51.93 -0.33 2.19 16 34 H 0.03 0.70 7.42 -51.93 -0.39 0.31 16 LS Contribution 257.09 15.07 3.87 3.87 Total: -1.00 -26.50 257.09 -7.03 -33.53 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -4.67 Total: 7.63 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: -1.56 Total: -24.85 kcal Atomic # 7 Polarization: -22.75 SS G_CDS: 0.64 Total: -22.10 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.30 Total: -13.55 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -26.50 -7.03 -33.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260897402.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.531 kcal (2) G-P(sol) polarization free energy of solvation -26.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds