Wall clock time and date at job start Mon Mar 30 2020 02:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99893 * 2 1 4 4 H 1.48503 * 109.46943 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47336 * 299.99878 * 3 2 1 6 6 H 1.48508 * 109.47060 * 60.00282 * 3 2 1 7 7 C 1.37880 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99691 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00285 * 0.02562 * 7 2 1 10 10 O 1.42906 * 110.08020 * 30.81442 * 9 7 2 11 11 C 1.54510 * 110.10592 * 152.38222 * 9 7 2 12 12 C 1.54981 * 104.21881 * 95.75729 * 11 9 7 13 13 C 1.55103 * 102.86615 * 37.44142 * 12 11 9 14 14 C 1.52957 * 110.15524 * 269.21358 * 9 7 2 15 15 C 1.53964 * 110.93494 * 2.26629 * 14 9 7 16 16 C 1.55059 * 102.67647 * 157.41103 * 15 14 9 17 17 C 1.54343 * 104.31222 * 323.03456 * 16 15 14 18 18 C 1.53323 * 111.31729 * 119.15195 * 14 9 7 19 19 H 0.97000 * 119.99962 * 359.97438 * 1 2 3 20 20 H 0.96704 * 114.00091 * 60.11741 * 10 9 7 21 21 H 1.08996 * 110.48535 * 337.07555 * 11 9 7 22 22 H 1.08995 * 110.48907 * 214.44202 * 11 9 7 23 23 H 1.08995 * 110.73094 * 279.09454 * 12 11 9 24 24 H 1.09002 * 110.73120 * 155.78634 * 12 11 9 25 25 H 1.08997 * 110.53088 * 81.47490 * 13 12 11 26 26 H 1.09004 * 110.52838 * 204.23574 * 13 12 11 27 27 H 1.08997 * 110.76512 * 275.70615 * 15 14 9 28 28 H 1.09001 * 110.77115 * 39.11433 * 15 14 9 29 29 H 1.08999 * 110.46724 * 204.32229 * 16 15 14 30 30 H 1.09000 * 110.57153 * 81.79735 * 16 15 14 31 31 H 1.09003 * 110.03491 * 264.15045 * 17 16 15 32 32 H 1.09003 * 110.03415 * 142.71071 * 17 16 15 33 33 H 1.08999 * 110.07952 * 336.29460 * 18 14 9 34 34 H 1.09004 * 110.07953 * 97.79241 * 18 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 8 0.0078 -2.3480 -0.6875 11 6 2.0993 -3.6021 -0.6715 12 6 2.7973 -4.3196 0.5117 13 6 1.7023 -4.3194 1.6102 14 6 1.0042 -2.9652 1.4363 15 6 1.5462 -1.9394 2.4485 16 6 0.7227 -2.2526 3.7245 17 6 -0.6816 -2.6111 3.1938 18 6 -0.4954 -3.0755 1.7364 19 1 -0.4850 0.8400 0.0004 20 1 0.1000 -2.0798 -1.6121 21 1 2.8388 -3.1607 -1.3396 22 1 1.4596 -4.2972 -1.2152 23 1 3.6732 -3.7599 0.8397 24 1 3.0696 -5.3390 0.2383 25 1 0.9986 -5.1359 1.4485 26 1 2.1536 -4.3926 2.5997 27 1 2.6099 -2.0971 2.6266 28 1 1.3571 -0.9218 2.1066 29 1 0.6736 -1.3765 4.3711 30 1 1.1544 -3.0974 4.2612 31 1 -1.3283 -1.7343 3.2268 32 1 -1.1119 -3.4158 3.7901 33 1 -1.0601 -2.4305 1.0632 34 1 -0.8238 -4.1091 1.6271 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260897402.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:30 Heat of formation + Delta-G solvation = -77.228257 kcal Electronic energy + Delta-G solvation = -15422.758530 eV Core-core repulsion = 13126.115463 eV Total energy + Delta-G solvation = -2296.643067 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.74613 -36.65776 -34.90643 -33.92504 -29.54778 -29.27230 -28.87112 -25.93620 -23.50184 -21.48861 -20.88529 -19.23372 -18.54557 -16.70325 -16.38182 -16.23630 -15.68686 -15.24144 -14.71910 -14.12358 -13.79511 -13.65480 -13.22804 -12.79081 -12.75725 -12.50527 -12.08528 -11.82455 -11.78601 -11.65523 -11.48849 -11.36773 -11.24627 -10.96827 -10.76778 -10.43194 -10.30292 -9.80417 -7.82667 -6.03545 1.37855 1.44166 1.50731 2.47733 3.30075 3.88992 4.03825 4.04486 4.28981 4.36554 4.40764 4.57458 4.88116 4.91911 4.97263 5.01676 5.05189 5.05866 5.11113 5.23672 5.24815 5.32725 5.38081 5.46798 5.57371 5.69078 5.76852 5.83726 5.96226 6.14940 6.19669 6.40627 6.92523 7.52667 7.82762 9.08611 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.028711 B = 0.016064 C = 0.013599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.017357 B = 1742.634874 C = 2058.427570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.044 3.956 3 Si 0.919 3.081 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.287 1.287 7 C -0.548 4.548 8 H 0.042 0.958 9 C 0.241 3.759 10 O -0.545 6.545 11 C -0.150 4.150 12 C -0.111 4.111 13 C -0.107 4.107 14 C -0.043 4.043 15 C -0.090 4.090 16 C -0.123 4.123 17 C -0.115 4.115 18 C -0.100 4.100 19 H 0.248 0.752 20 H 0.345 0.655 21 H 0.046 0.954 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.045 0.955 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.038 0.962 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.118 -6.223 3.768 7.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.159 4.159 3 Si 0.746 3.254 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.587 4.587 8 H 0.060 0.940 9 C 0.201 3.799 10 O -0.347 6.347 11 C -0.188 4.188 12 C -0.148 4.148 13 C -0.144 4.144 14 C -0.044 4.044 15 C -0.127 4.127 16 C -0.161 4.161 17 C -0.153 4.153 18 C -0.138 4.138 19 H 0.058 0.942 20 H 0.189 0.811 21 H 0.065 0.935 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.093 0.907 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.702 -6.283 4.367 7.839 hybrid contribution 0.636 1.537 -0.801 1.847 sum 2.339 -4.746 3.566 6.381 Atomic orbital electron populations 1.70344 1.06020 1.25140 1.48547 1.25413 0.95200 1.00327 0.94961 0.86140 0.79566 0.82440 0.77215 1.19797 1.21155 1.21324 1.21669 0.92395 0.92146 1.52471 0.93972 1.19358 0.81025 0.90668 0.88842 1.86426 1.31676 1.90666 1.25973 1.23184 0.99227 0.98374 0.98033 1.22336 0.97470 0.99580 0.95454 1.22351 0.97316 0.96122 0.98621 1.21235 0.94147 0.93880 0.95094 1.22323 0.96941 1.00231 0.93229 1.22464 0.95756 1.00371 0.97459 1.22106 0.97017 0.99716 0.96431 1.21864 0.97076 0.99134 0.95699 0.94192 0.81111 0.93504 0.92879 0.92564 0.90714 0.91938 0.91291 0.93657 0.92112 0.92821 0.90872 0.94274 0.91191 0.92139 0.93623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.74 11.60 21.45 0.25 -47.49 16 2 C 0.04 2.32 3.92 84.65 0.33 2.65 16 3 Si 0.92 42.66 29.54 68.60 2.03 44.69 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 6 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 7 C -0.55 -28.44 6.15 25.60 0.16 -28.28 16 8 H 0.04 2.24 7.81 -2.91 -0.02 2.22 16 9 C 0.24 11.36 1.08 -11.04 -0.01 11.35 16 10 O -0.55 -27.44 8.44 -148.98 -1.26 -28.70 16 11 C -0.15 -6.11 6.11 31.79 0.19 -5.92 16 12 C -0.11 -3.86 6.92 31.99 0.22 -3.64 16 13 C -0.11 -3.77 5.76 31.43 0.18 -3.59 16 14 C -0.04 -1.83 0.72 -51.65 -0.04 -1.87 16 15 C -0.09 -3.88 4.65 31.62 0.15 -3.73 16 16 C -0.12 -4.43 6.60 31.76 0.21 -4.22 16 17 C -0.12 -4.29 6.82 31.42 0.21 -4.07 16 18 C -0.10 -4.27 5.61 31.07 0.17 -4.10 16 19 H 0.25 13.44 8.31 -92.71 -0.77 12.67 16 20 H 0.35 16.88 9.07 -74.05 -0.67 16.21 16 21 H 0.05 1.94 7.84 -2.39 -0.02 1.92 16 22 H 0.05 2.06 8.08 -2.39 -0.02 2.04 16 23 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.06 2.08 7.47 -2.39 -0.02 2.06 16 26 H 0.07 2.20 7.49 -2.38 -0.02 2.18 16 27 H 0.04 1.87 8.00 -2.39 -0.02 1.85 16 28 H 0.06 3.09 5.42 -2.39 -0.01 3.08 16 29 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.07 2.25 7.92 -2.39 -0.02 2.23 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.06 3.07 6.32 -2.39 -0.02 3.06 16 34 H 0.05 1.79 7.42 -2.39 -0.02 1.77 16 Total: -1.00 -56.09 257.09 3.20 -52.89 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.40 Total: 24.01 kcal Atomic # 6 Polarization: -47.18 SS G_CDS: 1.78 Total: -45.40 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.25 Total: -47.49 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -1.26 Total: -28.70 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -56.09 3.20 -52.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260897402.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.339 kcal (2) G-P(sol) polarization free energy of solvation -56.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds