Wall clock time and date at job start Mon Mar 30 2020 02:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46878 * 2 1 4 4 N 1.46498 * 109.46598 * 179.97438 * 3 2 1 5 5 N 1.39853 * 125.68706 * 89.97719 * 4 3 2 6 6 C 1.30263 * 109.46742 * 179.97438 * 5 4 3 7 7 C 1.41842 * 108.18992 * 359.97438 * 6 5 4 8 8 C 1.41291 * 126.62151 * 179.97438 * 7 6 5 9 9 H 1.08005 * 119.99820 * 187.17723 * 8 7 6 10 10 C 1.39596 * 120.00179 * 7.17202 * 8 7 6 11 11 N 1.31157 * 119.99646 * 10.72230 * 10 8 7 12 12 Si 1.86800 * 120.00220 * 190.72291 * 10 8 7 13 13 H 1.48500 * 109.46939 * 93.93078 * 12 10 8 14 14 H 1.48493 * 109.47237 * 213.93092 * 12 10 8 15 15 H 1.48500 * 109.46742 * 333.93352 * 12 10 8 16 16 C 1.34926 * 125.68788 * 269.97396 * 4 3 2 17 17 O 1.35285 * 126.51812 * 0.02562 * 16 4 3 18 18 C 1.42901 * 116.99384 * 90.00433 * 17 16 4 19 19 H 1.08999 * 109.47296 * 60.00091 * 1 2 3 20 20 H 1.09001 * 109.46910 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.46995 * 299.99865 * 1 2 3 22 22 H 1.08999 * 109.46804 * 239.99806 * 2 1 3 23 23 H 1.09004 * 109.46868 * 119.99804 * 2 1 3 24 24 H 1.08999 * 109.46826 * 60.00381 * 3 2 1 25 25 H 1.08999 * 109.47083 * 300.00039 * 3 2 1 26 26 H 1.08008 * 125.90647 * 180.02562 * 6 5 4 27 27 H 0.97004 * 119.99686 * 179.97438 * 11 10 8 28 28 H 1.09002 * 109.47109 * 60.00331 * 18 17 16 29 29 H 1.09002 * 109.46707 * 179.97438 * 18 17 16 30 30 H 1.08992 * 109.47170 * 299.99176 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 7 4.3213 1.4418 -1.1349 6 6 5.5719 1.4425 -0.7706 7 6 5.6201 1.4443 0.6470 8 6 6.7821 1.4450 1.4509 9 1 6.6981 1.3295 2.5215 10 6 8.0385 1.5949 0.8614 11 7 8.1340 1.9435 -0.3994 12 14 9.5839 1.2989 1.8682 13 1 10.0327 -0.1048 1.6850 14 1 10.6540 2.2237 1.4159 15 1 9.2934 1.5422 3.3040 16 6 4.2916 1.4431 1.0968 17 8 3.8777 1.4434 2.3848 18 6 3.6797 0.1702 3.0028 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 1.6767 1.9563 0.8900 25 1 1.6766 1.9564 -0.8900 26 1 6.4248 1.4426 -1.4333 27 1 9.0071 2.0480 -0.8089 28 1 4.6168 -0.3864 2.9965 29 1 3.3494 0.3133 4.0316 30 1 2.9222 -0.3871 2.4519 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260923700.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:50 Heat of formation + Delta-G solvation = 25.266202 kcal Electronic energy + Delta-G solvation = -14005.666326 eV Core-core repulsion = 11609.927409 eV Total energy + Delta-G solvation = -2395.738917 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.49076 -36.53828 -34.85133 -33.29681 -30.22805 -28.70504 -26.66755 -25.39752 -24.07561 -21.47131 -19.80733 -19.21425 -17.36692 -16.06533 -15.06154 -14.80846 -14.63274 -14.13930 -13.73096 -13.44758 -12.94771 -12.27834 -12.20306 -11.75853 -11.60185 -11.24605 -11.16648 -11.01314 -10.89498 -10.49999 -10.47108 -10.19945 -9.44089 -9.20849 -8.58582 -7.72285 -7.17784 -6.53717 -3.99299 2.87881 3.18293 3.23200 3.23654 3.79194 4.10167 4.27822 4.88390 5.14428 5.24855 5.45808 5.55226 5.64574 5.79295 5.93212 5.97343 6.05527 6.09374 6.19553 6.29753 6.53853 6.76484 7.15520 7.44073 7.48700 7.74796 8.07368 8.58257 8.76253 9.08079 9.21205 9.42822 10.46853 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.048275 B = 0.009127 C = 0.008013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.869282 B = 3067.017009 C = 3493.606850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.143 4.143 3 C 0.148 3.852 4 N -0.399 5.399 5 N -0.314 5.314 6 C 0.035 3.965 7 C -0.005 4.005 8 C -0.425 4.425 9 H 0.073 0.927 10 C 0.068 3.932 11 N -0.830 5.830 12 Si 0.915 3.085 13 H -0.273 1.273 14 H -0.280 1.280 15 H -0.265 1.265 16 C 0.052 3.948 17 O -0.292 6.292 18 C 0.021 3.979 19 H 0.055 0.945 20 H 0.053 0.947 21 H 0.054 0.946 22 H 0.066 0.934 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.197 0.803 27 H 0.276 0.724 28 H 0.043 0.957 29 H 0.075 0.925 30 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.326 -3.392 2.098 8.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.181 4.181 3 C 0.025 3.975 4 N -0.197 5.197 5 N -0.138 5.138 6 C -0.152 4.152 7 C -0.016 4.016 8 C -0.458 4.458 9 H 0.091 0.909 10 C -0.145 4.145 11 N -0.461 5.461 12 Si 0.741 3.259 13 H -0.199 1.199 14 H -0.205 1.205 15 H -0.190 1.190 16 C -0.109 4.109 17 O -0.202 6.202 18 C -0.075 4.075 19 H 0.074 0.926 20 H 0.073 0.927 21 H 0.073 0.927 22 H 0.085 0.915 23 H 0.080 0.920 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.214 0.786 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -8.067 -3.165 1.226 8.752 hybrid contribution 1.212 -0.489 1.145 1.738 sum -6.855 -3.654 2.371 8.122 Atomic orbital electron populations 1.21690 0.95414 1.01538 1.01754 1.22033 0.95521 0.97899 1.02683 1.21173 0.77756 0.96258 1.02325 1.47863 1.03933 1.64184 1.03690 1.76554 1.03549 1.25919 1.07828 1.24558 0.93062 1.01356 0.96218 1.17999 0.89924 1.01118 0.92543 1.18700 0.89129 1.43559 0.94435 0.90926 1.25717 1.00537 0.93025 0.95175 1.69669 1.25919 1.38049 1.12447 0.86189 0.80540 0.78636 0.80578 1.19855 1.20499 1.18960 1.19109 0.88738 1.23950 0.79061 1.86093 1.86793 1.26589 1.20724 1.23087 0.99714 0.87900 0.96836 0.92596 0.92745 0.92727 0.91500 0.92016 0.90699 0.90575 0.78641 0.91354 0.93804 0.90601 0.95265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 37.16 0.37 -1.35 16 2 C -0.14 -2.24 6.26 -26.73 -0.17 -2.40 16 3 C 0.15 2.72 6.36 -4.04 -0.03 2.70 16 4 N -0.40 -9.52 3.59 -60.47 -0.22 -9.73 16 5 N -0.31 -8.07 12.45 30.95 0.39 -7.69 16 6 C 0.04 0.96 10.87 -16.84 -0.18 0.77 16 7 C -0.01 -0.15 5.91 -106.60 -0.63 -0.78 16 8 C -0.42 -11.79 9.36 -37.92 -0.35 -12.15 16 9 H 0.07 1.99 7.86 -52.48 -0.41 1.58 16 10 C 0.07 1.76 5.45 -17.33 -0.09 1.66 16 11 N -0.83 -21.84 10.58 55.53 0.59 -21.26 16 12 Si 0.91 19.58 29.57 -169.99 -5.03 14.55 16 13 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 14 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 15 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 16 C 0.05 1.34 7.08 -15.43 -0.11 1.24 16 17 O -0.29 -6.91 10.44 -17.55 -0.18 -7.09 16 18 C 0.02 0.39 11.13 101.05 1.12 1.51 16 19 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 20 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 23 H 0.06 1.02 6.16 -51.93 -0.32 0.70 16 24 H 0.07 1.31 8.12 -51.93 -0.42 0.89 16 25 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.20 5.31 6.04 -52.48 -0.32 4.99 16 27 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 28 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.03 0.51 6.16 -51.93 -0.32 0.19 16 LS Contribution 259.91 15.07 3.92 3.92 Total: -1.00 -29.76 259.91 -4.50 -34.25 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -3.88 Total: 1.84 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -0.07 Total: -8.79 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.76 Total: -38.68 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.18 Total: -7.09 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.76 -4.50 -34.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260923700.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.520 kcal (2) G-P(sol) polarization free energy of solvation -29.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds