Wall clock time and date at job start Mon Mar 30 2020 02:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46878 * 2 1 4 4 N 1.46498 * 109.46598 * 179.97438 * 3 2 1 5 5 N 1.39853 * 125.68706 * 89.97719 * 4 3 2 6 6 C 1.30263 * 109.46742 * 179.97438 * 5 4 3 7 7 C 1.41842 * 108.18992 * 359.97438 * 6 5 4 8 8 C 1.41291 * 126.62151 * 179.97438 * 7 6 5 9 9 H 1.08005 * 119.99820 * 187.17723 * 8 7 6 10 10 C 1.39596 * 120.00179 * 7.17202 * 8 7 6 11 11 N 1.31157 * 119.99646 * 10.72230 * 10 8 7 12 12 Si 1.86800 * 120.00220 * 190.72291 * 10 8 7 13 13 H 1.48500 * 109.46939 * 93.93078 * 12 10 8 14 14 H 1.48493 * 109.47237 * 213.93092 * 12 10 8 15 15 H 1.48500 * 109.46742 * 333.93352 * 12 10 8 16 16 C 1.34926 * 125.68788 * 269.97396 * 4 3 2 17 17 O 1.35285 * 126.51812 * 0.02562 * 16 4 3 18 18 C 1.42901 * 116.99384 * 90.00433 * 17 16 4 19 19 H 1.08999 * 109.47296 * 60.00091 * 1 2 3 20 20 H 1.09001 * 109.46910 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.46995 * 299.99865 * 1 2 3 22 22 H 1.08999 * 109.46804 * 239.99806 * 2 1 3 23 23 H 1.09004 * 109.46868 * 119.99804 * 2 1 3 24 24 H 1.08999 * 109.46826 * 60.00381 * 3 2 1 25 25 H 1.08999 * 109.47083 * 300.00039 * 3 2 1 26 26 H 1.08008 * 125.90647 * 180.02562 * 6 5 4 27 27 H 0.97004 * 119.99686 * 179.97438 * 11 10 8 28 28 H 1.09002 * 109.47109 * 60.00331 * 18 17 16 29 29 H 1.09002 * 109.46707 * 179.97438 * 18 17 16 30 30 H 1.08992 * 109.47170 * 299.99176 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 7 4.3213 1.4418 -1.1349 6 6 5.5719 1.4425 -0.7706 7 6 5.6201 1.4443 0.6470 8 6 6.7821 1.4450 1.4509 9 1 6.6981 1.3295 2.5215 10 6 8.0385 1.5949 0.8614 11 7 8.1340 1.9435 -0.3994 12 14 9.5839 1.2989 1.8682 13 1 10.0327 -0.1048 1.6850 14 1 10.6540 2.2237 1.4159 15 1 9.2934 1.5422 3.3040 16 6 4.2916 1.4431 1.0968 17 8 3.8777 1.4434 2.3848 18 6 3.6797 0.1702 3.0028 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 1.6767 1.9563 0.8900 25 1 1.6766 1.9564 -0.8900 26 1 6.4248 1.4426 -1.4333 27 1 9.0071 2.0480 -0.8089 28 1 4.6168 -0.3864 2.9965 29 1 3.3494 0.3133 4.0316 30 1 2.9222 -0.3871 2.4519 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260923700.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:50 Heat of formation + Delta-G solvation = 5.640066 kcal Electronic energy + Delta-G solvation = -14006.517379 eV Core-core repulsion = 11609.927409 eV Total energy + Delta-G solvation = -2396.589970 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.42948 -38.39576 -36.37215 -35.11184 -31.88554 -30.66909 -28.30744 -27.00735 -25.90268 -22.83704 -21.78805 -21.05046 -19.26931 -17.95388 -16.82576 -16.57940 -16.04670 -15.90688 -15.29580 -15.01092 -14.69901 -13.89855 -13.75562 -13.28984 -13.03869 -12.96549 -12.84313 -12.64803 -12.30912 -12.20551 -12.03501 -11.66634 -11.30438 -11.11345 -10.52325 -9.64102 -9.18946 -8.45638 -6.02937 1.02314 1.44066 1.48845 1.57648 1.97482 2.27505 2.32685 3.14001 3.50614 3.80872 4.00205 4.22894 4.37671 4.42297 4.53154 4.59249 4.69724 4.80283 4.89688 5.09786 5.12553 5.16972 5.35614 5.44646 5.54009 5.89880 6.05274 6.52373 6.79866 7.07753 7.26700 7.42565 8.56955 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.048275 B = 0.009127 C = 0.008013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.869282 B = 3067.017009 C = 3493.606850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.133 4.133 3 C 0.134 3.866 4 N -0.389 5.389 5 N -0.322 5.322 6 C 0.013 3.987 7 C -0.050 4.050 8 C -0.462 4.462 9 H 0.064 0.936 10 C 0.026 3.974 11 N -0.857 5.857 12 Si 0.988 3.012 13 H -0.265 1.265 14 H -0.269 1.269 15 H -0.264 1.264 16 C 0.062 3.938 17 O -0.308 6.308 18 C 0.022 3.978 19 H 0.066 0.934 20 H 0.070 0.930 21 H 0.066 0.934 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.188 0.812 27 H 0.284 0.716 28 H 0.031 0.969 29 H 0.117 0.883 30 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.487 -3.929 3.165 9.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.172 4.172 3 C 0.013 3.987 4 N -0.187 5.187 5 N -0.149 5.149 6 C -0.172 4.172 7 C -0.061 4.061 8 C -0.496 4.496 9 H 0.082 0.918 10 C -0.183 4.183 11 N -0.488 5.488 12 Si 0.810 3.190 13 H -0.190 1.190 14 H -0.194 1.194 15 H -0.189 1.189 16 C -0.101 4.101 17 O -0.218 6.218 18 C -0.074 4.074 19 H 0.085 0.915 20 H 0.089 0.911 21 H 0.085 0.915 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.107 0.893 25 H 0.109 0.891 26 H 0.205 0.795 27 H 0.094 0.906 28 H 0.049 0.951 29 H 0.135 0.865 30 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.261 -3.706 2.272 10.231 hybrid contribution 1.353 -0.315 0.865 1.637 sum -7.908 -4.021 3.136 9.410 Atomic orbital electron populations 1.21645 0.91863 1.03044 1.02953 1.21932 0.98413 0.95299 1.01545 1.21690 0.74566 0.98709 1.03718 1.48313 1.05847 1.61883 1.02689 1.76475 1.03288 1.26578 1.08524 1.24387 0.93446 1.03276 0.96121 1.18392 0.91270 1.03232 0.93165 1.18838 0.90418 1.46171 0.94124 0.91761 1.26556 1.03232 0.92186 0.96359 1.69729 1.27087 1.38217 1.13744 0.85098 0.76347 0.78876 0.78712 1.18970 1.19418 1.18858 1.19233 0.88776 1.21801 0.80265 1.85968 1.86677 1.29541 1.19659 1.23284 0.99733 0.85628 0.98723 0.91506 0.91126 0.91460 0.92960 0.92872 0.89343 0.89120 0.79529 0.90613 0.95065 0.86480 0.93673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.91 71.98 0.71 -2.02 16 2 C -0.13 -3.88 6.26 30.60 0.19 -3.69 16 3 C 0.13 4.68 6.36 86.38 0.55 5.23 16 4 N -0.39 -18.45 3.59 -456.92 -1.64 -20.10 16 5 N -0.32 -16.82 12.45 -55.99 -0.70 -17.52 16 6 C 0.01 0.72 10.87 85.82 0.93 1.65 16 7 C -0.05 -2.87 5.91 -21.15 -0.13 -3.00 16 8 C -0.46 -26.40 9.36 23.35 0.22 -26.18 16 9 H 0.06 3.62 7.86 -2.91 -0.02 3.60 16 10 C 0.03 1.38 5.45 85.12 0.46 1.84 16 11 N -0.86 -46.21 10.58 21.78 0.23 -45.98 16 12 Si 0.99 40.43 29.57 68.60 2.03 42.45 16 13 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 14 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 15 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 16 C 0.06 3.24 7.08 84.71 0.60 3.84 16 17 O -0.31 -14.28 10.44 -85.70 -0.89 -15.17 16 18 C 0.02 0.76 11.13 113.37 1.26 2.03 16 19 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 20 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 21 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 22 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.05 1.63 6.16 -2.38 -0.01 1.62 16 24 H 0.09 2.86 8.12 -2.39 -0.02 2.84 16 25 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 26 H 0.19 10.64 6.04 -2.91 -0.02 10.62 16 27 H 0.28 13.84 8.30 -92.71 -0.77 13.07 16 28 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 30 H 0.04 1.46 6.16 -2.39 -0.01 1.45 16 Total: -1.00 -65.33 259.91 4.96 -60.38 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 1.13 Total: 16.23 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: 4.80 Total: -20.30 kcal Atomic # 7 Polarization: -81.48 SS G_CDS: -2.11 Total: -83.59 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.89 Total: -15.17 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.45 kcal Total: -65.33 4.96 -60.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260923700.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.018 kcal (2) G-P(sol) polarization free energy of solvation -65.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds