Wall clock time and date at job start Mon Mar 30 2020 02:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47010 * 2 1 4 4 C 1.52998 * 109.47213 * 119.99926 * 2 1 3 5 5 N 1.46503 * 109.46974 * 65.00187 * 4 2 1 6 6 N 1.39847 * 125.68798 * 90.02643 * 5 4 2 7 7 C 1.30273 * 109.46785 * 179.97438 * 6 5 4 8 8 C 1.41844 * 108.18315 * 359.97438 * 7 6 5 9 9 C 1.41290 * 126.61452 * 179.97438 * 8 7 6 10 10 H 1.08005 * 119.99775 * 187.11463 * 9 8 7 11 11 C 1.39596 * 120.00224 * 7.11405 * 9 8 7 12 12 N 1.31151 * 120.00162 * 10.69798 * 11 9 8 13 13 Si 1.86805 * 119.99870 * 190.69687 * 11 9 8 14 14 H 1.48501 * 109.47020 * 93.92974 * 13 11 9 15 15 H 1.48499 * 109.46706 * 213.93001 * 13 11 9 16 16 H 1.48496 * 109.46964 * 333.92818 * 13 11 9 17 17 C 1.34919 * 125.68542 * 270.02181 * 5 4 2 18 18 O 1.35288 * 126.52167 * 0.02681 * 17 5 4 19 19 H 1.08995 * 109.47294 * 300.00239 * 1 2 3 20 20 H 1.09004 * 109.47323 * 60.00445 * 1 2 3 21 21 H 1.09000 * 109.47133 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47026 * 240.00048 * 2 1 3 23 23 H 1.08999 * 109.47319 * 180.02562 * 3 2 1 24 24 H 1.09006 * 109.47155 * 299.99643 * 3 2 1 25 25 H 1.08995 * 109.47288 * 59.99757 * 3 2 1 26 26 H 1.08998 * 109.47051 * 305.00060 * 4 2 1 27 27 H 1.08999 * 109.47256 * 184.99973 * 4 2 1 28 28 H 1.07997 * 125.90515 * 179.97438 * 7 6 5 29 29 H 0.96990 * 120.00439 * 179.97438 * 12 11 9 30 30 H 0.96697 * 114.00329 * 89.99730 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6524 -2.1328 1.1905 6 7 2.4074 -3.1631 0.6211 7 6 1.7658 -4.2902 0.7434 8 6 0.5417 -4.0324 1.4122 9 6 -0.4522 -4.9797 1.7455 10 1 -1.3966 -4.6507 2.1535 11 6 -0.2137 -6.3408 1.5476 12 7 0.9942 -6.7590 1.2541 13 14 -1.6149 -7.5666 1.7008 14 1 -2.2048 -7.8141 0.3606 15 1 -1.0978 -8.8425 2.2574 16 1 -2.6561 -7.0175 2.6062 17 6 0.5077 -2.6556 1.6769 18 8 -0.4841 -1.9802 2.3018 19 1 -0.3633 0.5138 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 3.1299 1.4426 -0.0005 24 1 1.6766 1.9563 -0.8901 25 1 1.6766 1.9563 0.8899 26 1 1.6054 -0.2617 2.1369 27 1 3.1263 -0.6443 1.2951 28 1 2.1068 -5.2542 0.3957 29 1 1.1601 -7.7047 1.1169 30 1 -1.1670 -1.6435 1.7057 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260928010.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:44 Heat of formation + Delta-G solvation = 14.683559 kcal Electronic energy + Delta-G solvation = -14027.384806 eV Core-core repulsion = 11631.186991 eV Total energy + Delta-G solvation = -2396.197815 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.52825 -36.00474 -35.66503 -33.41319 -30.48993 -28.41207 -27.02502 -25.83017 -24.01434 -20.44264 -19.77710 -19.22052 -17.47708 -16.39085 -15.27855 -14.84780 -14.44448 -14.04222 -13.36806 -12.99573 -12.73470 -12.31446 -12.18234 -11.91983 -11.69493 -11.31129 -11.13079 -10.82467 -10.73002 -10.61902 -10.48137 -10.44597 -9.71979 -9.18782 -8.69692 -7.70259 -7.16034 -6.50680 -3.97380 2.95101 3.19608 3.24371 3.28520 3.80597 4.12201 4.30360 5.04200 5.08904 5.19222 5.41651 5.59854 5.68208 5.76128 5.84101 5.95191 6.03215 6.07635 6.21562 6.46080 6.52895 6.77089 7.20900 7.45134 7.54497 7.91648 8.10455 8.59833 8.79682 9.10662 9.22164 9.44002 10.50267 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.056982 B = 0.008471 C = 0.007814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.261878 B = 3304.613983 C = 3582.516359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C -0.142 4.142 4 C 0.152 3.848 5 N -0.397 5.397 6 N -0.318 5.318 7 C 0.036 3.964 8 C -0.014 4.014 9 C -0.428 4.428 10 H 0.072 0.928 11 C 0.067 3.933 12 N -0.833 5.833 13 Si 0.915 3.085 14 H -0.273 1.273 15 H -0.280 1.280 16 H -0.266 1.266 17 C 0.063 3.937 18 O -0.458 6.458 19 H 0.054 0.946 20 H 0.050 0.950 21 H 0.059 0.941 22 H 0.074 0.926 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.197 0.803 29 H 0.275 0.725 30 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.927 8.756 -2.451 9.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.133 4.133 3 C -0.200 4.200 4 C 0.028 3.972 5 N -0.195 5.195 6 N -0.143 5.143 7 C -0.150 4.150 8 C -0.025 4.025 9 C -0.462 4.462 10 H 0.090 0.910 11 C -0.144 4.144 12 N -0.464 5.464 13 Si 0.741 3.259 14 H -0.199 1.199 15 H -0.206 1.206 16 H -0.190 1.190 17 C -0.099 4.099 18 O -0.258 6.258 19 H 0.073 0.927 20 H 0.069 0.931 21 H 0.078 0.922 22 H 0.093 0.907 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.213 0.787 29 H 0.086 0.914 30 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 0.442 9.088 -2.302 9.386 hybrid contribution -1.711 -0.756 -0.052 1.872 sum -1.269 8.332 -2.354 8.751 Atomic orbital electron populations 1.21870 0.95297 1.02146 1.01092 1.21564 0.96448 0.95828 0.99503 1.21766 1.00912 0.95682 1.01633 1.21226 1.00113 0.78608 0.97240 1.47874 1.15933 1.05407 1.50277 1.76572 1.20792 0.96315 1.20614 1.24545 0.94364 0.95922 1.00208 1.17990 0.95797 0.89471 0.99243 1.18672 1.00258 0.89831 1.37451 0.90999 1.25692 0.96154 0.99104 0.93496 1.69659 1.20339 1.16499 1.39928 0.86197 0.81443 0.79389 0.78920 1.19892 1.20579 1.19038 1.18795 0.87311 0.89819 1.13960 1.84874 1.33300 1.73826 1.33826 0.92689 0.93108 0.92193 0.90748 0.92637 0.92677 0.92692 0.90675 0.90667 0.78717 0.91439 0.80255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.15 37.16 0.30 -1.85 16 2 C -0.11 -1.72 3.13 -90.62 -0.28 -2.00 16 3 C -0.14 -1.64 9.19 37.16 0.34 -1.29 16 4 C 0.15 2.72 5.79 -4.04 -0.02 2.70 16 5 N -0.40 -9.22 3.43 -60.47 -0.21 -9.43 16 6 N -0.32 -8.09 12.45 30.95 0.39 -7.70 16 7 C 0.04 0.98 10.87 -16.83 -0.18 0.80 16 8 C -0.01 -0.40 5.92 -106.60 -0.63 -1.03 16 9 C -0.43 -11.89 9.36 -37.92 -0.35 -12.25 16 10 H 0.07 1.96 7.86 -52.48 -0.41 1.55 16 11 C 0.07 1.75 5.45 -17.34 -0.09 1.66 16 12 N -0.83 -22.07 10.57 55.53 0.59 -21.48 16 13 Si 0.91 19.68 29.57 -169.99 -5.03 14.65 16 14 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 15 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 16 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 17 C 0.06 1.58 6.64 -15.44 -0.10 1.48 16 18 O -0.46 -10.28 13.19 -17.56 -0.23 -10.51 16 19 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 20 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.06 1.04 5.50 -51.93 -0.29 0.75 16 22 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 1.29 8.12 -51.93 -0.42 0.87 16 27 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 28 H 0.20 5.30 6.04 -52.49 -0.32 4.99 16 29 H 0.27 6.67 8.30 -40.82 -0.34 6.33 16 30 H 0.34 6.33 7.47 45.56 0.34 6.67 16 LS Contribution 255.32 15.07 3.85 3.85 Total: -1.00 -29.85 255.32 -4.86 -34.72 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -3.19 Total: 7.69 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -1.03 Total: -11.78 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.77 Total: -38.61 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: -0.23 Total: -10.51 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.03 Total: 14.65 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.85 -4.86 -34.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260928010.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.402 kcal (2) G-P(sol) polarization free energy of solvation -29.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds