Wall clock time and date at job start Mon Mar 30 2020 02:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47010 * 2 1 4 4 C 1.52998 * 109.47213 * 119.99926 * 2 1 3 5 5 N 1.46503 * 109.46974 * 65.00187 * 4 2 1 6 6 N 1.39847 * 125.68798 * 90.02643 * 5 4 2 7 7 C 1.30273 * 109.46785 * 179.97438 * 6 5 4 8 8 C 1.41844 * 108.18315 * 359.97438 * 7 6 5 9 9 C 1.41290 * 126.61452 * 179.97438 * 8 7 6 10 10 H 1.08005 * 119.99775 * 187.11463 * 9 8 7 11 11 C 1.39596 * 120.00224 * 7.11405 * 9 8 7 12 12 N 1.31151 * 120.00162 * 10.69798 * 11 9 8 13 13 Si 1.86805 * 119.99870 * 190.69687 * 11 9 8 14 14 H 1.48501 * 109.47020 * 93.92974 * 13 11 9 15 15 H 1.48499 * 109.46706 * 213.93001 * 13 11 9 16 16 H 1.48496 * 109.46964 * 333.92818 * 13 11 9 17 17 C 1.34919 * 125.68542 * 270.02181 * 5 4 2 18 18 O 1.35288 * 126.52167 * 0.02681 * 17 5 4 19 19 H 1.08995 * 109.47294 * 300.00239 * 1 2 3 20 20 H 1.09004 * 109.47323 * 60.00445 * 1 2 3 21 21 H 1.09000 * 109.47133 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47026 * 240.00048 * 2 1 3 23 23 H 1.08999 * 109.47319 * 180.02562 * 3 2 1 24 24 H 1.09006 * 109.47155 * 299.99643 * 3 2 1 25 25 H 1.08995 * 109.47288 * 59.99757 * 3 2 1 26 26 H 1.08998 * 109.47051 * 305.00060 * 4 2 1 27 27 H 1.08999 * 109.47256 * 184.99973 * 4 2 1 28 28 H 1.07997 * 125.90515 * 179.97438 * 7 6 5 29 29 H 0.96990 * 120.00439 * 179.97438 * 12 11 9 30 30 H 0.96697 * 114.00329 * 89.99730 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6524 -2.1328 1.1905 6 7 2.4074 -3.1631 0.6211 7 6 1.7658 -4.2902 0.7434 8 6 0.5417 -4.0324 1.4122 9 6 -0.4522 -4.9797 1.7455 10 1 -1.3966 -4.6507 2.1535 11 6 -0.2137 -6.3408 1.5476 12 7 0.9942 -6.7590 1.2541 13 14 -1.6149 -7.5666 1.7008 14 1 -2.2048 -7.8141 0.3606 15 1 -1.0978 -8.8425 2.2574 16 1 -2.6561 -7.0175 2.6062 17 6 0.5077 -2.6556 1.6769 18 8 -0.4841 -1.9802 2.3018 19 1 -0.3633 0.5138 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 3.1299 1.4426 -0.0005 24 1 1.6766 1.9563 -0.8901 25 1 1.6766 1.9563 0.8899 26 1 1.6054 -0.2617 2.1369 27 1 3.1263 -0.6443 1.2951 28 1 2.1068 -5.2542 0.3957 29 1 1.1601 -7.7047 1.1169 30 1 -1.1670 -1.6435 1.7057 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260928010.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:44 Heat of formation + Delta-G solvation = -6.309205 kcal Electronic energy + Delta-G solvation = -14028.295121 eV Core-core repulsion = 11631.186991 eV Total energy + Delta-G solvation = -2397.108129 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.43901 -37.68174 -37.23498 -35.31563 -32.21086 -30.39972 -28.13137 -27.49977 -25.86084 -22.01828 -21.71813 -20.86864 -19.31857 -18.31481 -16.96081 -16.64968 -15.84674 -15.63070 -14.95539 -14.76647 -14.33851 -13.96661 -13.67515 -13.19533 -13.07975 -12.92327 -12.85550 -12.66856 -12.25555 -12.07872 -11.91825 -11.68724 -11.56075 -11.09090 -10.68623 -9.60022 -9.16676 -8.43264 -6.01057 1.11152 1.44653 1.50592 1.58112 2.01938 2.29526 2.33870 3.40766 3.67392 3.77854 3.92409 4.16181 4.33202 4.49918 4.71901 4.77827 4.84616 4.94073 4.98302 5.15953 5.18842 5.32627 5.38304 5.47505 5.59302 6.00374 6.23637 6.54386 6.84515 7.09985 7.31416 7.45124 8.59514 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.056982 B = 0.008471 C = 0.007814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.261878 B = 3304.613983 C = 3582.516359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.134 4.134 4 C 0.138 3.862 5 N -0.384 5.384 6 N -0.326 5.326 7 C 0.013 3.987 8 C -0.060 4.060 9 C -0.466 4.466 10 H 0.066 0.934 11 C 0.024 3.976 12 N -0.861 5.861 13 Si 0.988 3.012 14 H -0.265 1.265 15 H -0.272 1.272 16 H -0.265 1.265 17 C 0.080 3.920 18 O -0.459 6.459 19 H 0.069 0.931 20 H 0.071 0.929 21 H 0.027 0.973 22 H 0.053 0.947 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.186 0.814 29 H 0.282 0.718 30 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.680 10.259 -2.394 10.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 C -0.191 4.191 4 C 0.016 3.984 5 N -0.182 5.182 6 N -0.154 5.154 7 C -0.172 4.172 8 C -0.071 4.071 9 C -0.500 4.500 10 H 0.084 0.916 11 C -0.185 4.185 12 N -0.492 5.492 13 Si 0.810 3.190 14 H -0.190 1.190 15 H -0.196 1.196 16 H -0.189 1.189 17 C -0.085 4.085 18 O -0.262 6.262 19 H 0.088 0.912 20 H 0.090 0.910 21 H 0.046 0.954 22 H 0.072 0.928 23 H 0.081 0.919 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.107 0.893 27 H 0.104 0.896 28 H 0.202 0.798 29 H 0.092 0.908 30 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -0.292 10.622 -2.261 10.864 hybrid contribution -1.445 -1.003 -0.040 1.760 sum -1.737 9.619 -2.301 10.041 Atomic orbital electron populations 1.21859 0.94874 1.00523 1.02933 1.21493 0.96768 0.97652 0.96761 1.21711 1.01417 0.92852 1.03152 1.21750 1.01227 0.75870 0.99515 1.48281 1.14901 1.06955 1.48054 1.76495 1.21043 0.96471 1.21375 1.24350 0.94973 0.96180 1.01698 1.18390 0.96649 0.91011 1.01048 1.18850 1.00353 0.91157 1.39604 0.91607 1.26543 0.98740 1.00449 0.92727 1.69729 1.21978 1.17278 1.40222 0.85092 0.77946 0.76802 0.79121 1.18997 1.19643 1.18881 1.18833 0.88119 0.89641 1.11857 1.84755 1.33419 1.73483 1.34506 0.91174 0.91019 0.95410 0.92816 0.91884 0.91054 0.91276 0.89268 0.89563 0.79786 0.90771 0.77411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 8.15 71.98 0.59 -3.29 16 2 C -0.11 -2.98 3.13 -10.80 -0.03 -3.01 16 3 C -0.13 -2.58 9.19 71.98 0.66 -1.92 16 4 C 0.14 4.67 5.79 86.38 0.50 5.17 16 5 N -0.38 -17.66 3.43 -456.93 -1.57 -19.23 16 6 N -0.33 -16.88 12.45 -55.99 -0.70 -17.58 16 7 C 0.01 0.71 10.87 85.82 0.93 1.64 16 8 C -0.06 -3.43 5.92 -21.15 -0.13 -3.55 16 9 C -0.47 -26.51 9.36 23.35 0.22 -26.29 16 10 H 0.07 3.66 7.86 -2.91 -0.02 3.64 16 11 C 0.02 1.28 5.45 85.12 0.46 1.75 16 12 N -0.86 -46.73 10.57 21.78 0.23 -46.50 16 13 Si 0.99 40.62 29.57 68.60 2.03 42.65 16 14 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 15 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 16 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 17 C 0.08 4.03 6.64 84.71 0.56 4.59 16 18 O -0.46 -20.03 13.19 -85.74 -1.13 -21.16 16 19 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 20 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 21 H 0.03 0.91 5.50 -2.39 -0.01 0.90 16 22 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 25 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.09 2.80 8.12 -2.39 -0.02 2.78 16 27 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 28 H 0.19 10.54 6.04 -2.91 -0.02 10.52 16 29 H 0.28 13.91 8.30 -92.72 -0.77 13.14 16 30 H 0.37 13.00 7.47 -74.06 -0.55 12.44 16 Total: -1.00 -65.12 255.32 3.22 -61.89 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.59 Total: 24.87 kcal Atomic # 6 Polarization: -28.70 SS G_CDS: 3.77 Total: -24.93 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -2.03 Total: -83.31 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -1.13 Total: -21.16 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -65.12 3.22 -61.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260928010.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.584 kcal (2) G-P(sol) polarization free energy of solvation -65.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds