Wall clock time and date at job start Mon Mar 30 2020 02:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99991 * 2 1 4 4 H 1.48495 * 109.47212 * 89.99553 * 3 2 1 5 5 H 1.48504 * 109.47179 * 329.99914 * 3 2 1 6 6 H 1.48498 * 109.47522 * 210.00114 * 3 2 1 7 7 C 1.37877 * 120.00374 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00494 * 178.21694 * 7 2 1 9 9 C 1.50703 * 119.99713 * 358.22179 * 7 2 1 10 10 O 1.42899 * 109.51280 * 57.58062 * 9 7 2 11 11 C 1.53150 * 109.51119 * 297.47618 * 9 7 2 12 12 C 1.52972 * 109.42430 * 182.22820 * 11 9 7 13 13 C 1.52964 * 109.70425 * 61.69459 * 12 11 9 14 14 C 1.53140 * 109.43954 * 298.31542 * 13 12 11 15 15 C 1.52726 * 109.51135 * 177.72911 * 9 7 2 16 16 C 1.53425 * 113.49224 * 45.27392 * 15 9 7 17 17 C 1.53844 * 86.96872 * 220.13126 * 16 15 9 18 18 C 1.53393 * 113.55804 * 307.41550 * 15 9 7 19 19 H 0.97003 * 119.99630 * 185.50381 * 1 2 3 20 20 H 0.96699 * 113.99808 * 293.57169 * 10 9 7 21 21 H 1.08992 * 109.47969 * 302.21676 * 11 9 7 22 22 H 1.09002 * 109.47389 * 62.23527 * 11 9 7 23 23 H 1.08999 * 109.43187 * 181.76837 * 12 11 9 24 24 H 1.09004 * 109.43606 * 301.62239 * 12 11 9 25 25 H 1.09000 * 109.47610 * 58.30489 * 13 12 11 26 26 H 1.08998 * 109.47744 * 178.31606 * 13 12 11 27 27 H 1.09002 * 109.51369 * 177.75228 * 14 13 12 28 28 H 1.09002 * 109.51083 * 297.85419 * 14 13 12 29 29 H 1.09001 * 113.63241 * 334.65282 * 16 15 9 30 30 H 1.09004 * 113.62894 * 105.61006 * 16 15 9 31 31 H 1.09004 * 113.60344 * 270.58327 * 17 16 15 32 32 H 1.08997 * 113.67561 * 139.73080 * 17 16 15 33 33 H 1.09001 * 113.62813 * 254.32444 * 18 15 9 34 34 H 1.08997 * 113.63475 * 25.28251 * 18 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4000 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4403 -0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0842 -1.1943 -0.0286 9 6 1.2517 -2.4988 0.0416 10 8 0.3574 -2.5691 -1.0708 11 6 0.4539 -2.5881 1.3458 12 6 -0.2654 -3.9367 1.4109 13 6 0.7620 -5.0699 1.4069 14 6 1.5656 -5.0248 0.1041 15 6 2.2407 -3.6607 -0.0235 16 6 3.4500 -3.4873 0.9047 17 6 4.3046 -4.0693 -0.2345 18 6 3.2183 -3.5684 -1.2019 19 1 -0.4850 -0.8362 0.0806 20 1 -0.3599 -1.9213 -1.0403 21 1 1.1323 -2.4968 2.1939 22 1 -0.2799 -1.7827 1.3789 23 1 -0.8582 -3.9878 2.3241 24 1 -0.9221 -4.0395 0.5469 25 1 1.4370 -4.9514 2.2546 26 1 0.2471 -6.0275 1.4835 27 1 2.3247 -5.8069 0.1173 28 1 0.8964 -5.1810 -0.7420 29 1 3.6786 -2.4466 1.1346 30 1 3.4144 -4.1201 1.7915 31 1 4.3935 -5.1553 -0.2023 32 1 5.2651 -3.5697 -0.3603 33 1 2.9966 -4.2665 -2.0092 34 1 3.3829 -2.5502 -1.5544 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260946905.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:27 Heat of formation + Delta-G solvation = -42.828746 kcal Electronic energy + Delta-G solvation = -15393.287747 eV Core-core repulsion = 13098.136355 eV Total energy + Delta-G solvation = -2295.151392 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.83279 -35.90153 -33.95366 -31.97741 -28.97971 -27.65607 -24.89385 -24.56438 -22.28656 -20.91476 -19.58208 -17.89762 -16.81027 -15.30987 -14.66563 -14.51927 -13.87294 -13.73187 -13.23903 -12.61709 -12.57912 -11.91239 -11.64121 -11.36193 -10.98265 -10.80640 -10.77744 -10.62022 -10.26500 -10.23215 -10.14633 -9.98553 -9.79447 -9.37821 -9.25487 -8.65441 -8.35386 -7.77953 -6.32347 -4.16231 3.39995 3.43026 3.58694 4.47304 5.11065 5.37253 5.39427 5.45251 5.54345 5.65182 5.80059 5.91128 6.08202 6.20008 6.26617 6.32241 6.34461 6.45538 6.53384 6.57022 6.64348 6.73303 6.76463 6.85268 6.92598 7.05374 7.25888 7.29227 7.39676 7.55130 8.14036 8.37579 8.76228 9.25856 9.54945 10.91852 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.032869 B = 0.014712 C = 0.011851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.656476 B = 1902.811245 C = 2362.071228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.027 3.973 3 Si 1.067 2.933 4 H -0.288 1.288 5 H -0.284 1.284 6 H -0.289 1.289 7 C -0.602 4.602 8 H 0.060 0.940 9 C 0.254 3.746 10 O -0.589 6.589 11 C -0.145 4.145 12 C -0.117 4.117 13 C -0.111 4.111 14 C -0.091 4.091 15 C -0.052 4.052 16 C -0.122 4.122 17 C -0.148 4.148 18 C -0.116 4.116 19 H 0.269 0.731 20 H 0.364 0.636 21 H 0.052 0.948 22 H 0.068 0.932 23 H 0.042 0.958 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.062 0.938 29 H 0.096 0.904 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.401 -6.620 1.912 7.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.176 4.176 3 Si 0.896 3.104 4 H -0.215 1.215 5 H -0.210 1.210 6 H -0.215 1.215 7 C -0.640 4.640 8 H 0.078 0.922 9 C 0.215 3.785 10 O -0.397 6.397 11 C -0.184 4.184 12 C -0.155 4.155 13 C -0.149 4.149 14 C -0.129 4.129 15 C -0.052 4.052 16 C -0.159 4.159 17 C -0.186 4.186 18 C -0.153 4.153 19 H 0.085 0.915 20 H 0.213 0.787 21 H 0.071 0.929 22 H 0.086 0.914 23 H 0.060 0.940 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.115 0.885 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.608 -5.495 1.660 6.780 hybrid contribution -0.187 -1.182 0.367 1.251 sum 3.422 -6.676 2.027 7.771 Atomic orbital electron populations 1.70964 1.06909 1.30810 1.47439 1.25773 0.96463 1.02615 0.92728 0.83570 0.74837 0.75357 0.76672 1.21524 1.20991 1.21486 1.22570 0.95001 0.91936 1.54532 0.92228 1.18645 0.85887 0.92155 0.81817 1.86287 1.43606 1.61108 1.48718 1.22376 0.99911 0.95173 1.00917 1.21510 0.97657 0.96207 1.00116 1.21464 0.97864 0.97617 0.97933 1.21255 0.98225 0.95877 0.97503 1.21271 0.93661 0.94033 0.96234 1.22966 0.95743 1.01834 0.95400 1.22903 0.97599 0.99215 0.98870 1.22781 0.95217 1.01648 0.95653 0.91487 0.78673 0.92902 0.91399 0.93961 0.92363 0.92735 0.93432 0.93413 0.91972 0.88549 0.93248 0.91651 0.92601 0.93393 0.88960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.88 12.66 55.43 0.70 -25.18 16 2 C 0.03 0.74 5.24 -17.82 -0.09 0.64 16 3 Si 1.07 24.50 29.90 -169.99 -5.08 19.42 16 4 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.60 -15.91 6.45 -34.44 -0.22 -16.13 16 8 H 0.06 1.57 5.41 -52.49 -0.28 1.29 16 9 C 0.25 6.11 0.26 -91.83 -0.02 6.09 16 10 O -0.59 -15.10 12.05 -35.23 -0.42 -15.52 16 11 C -0.15 -3.32 4.48 -26.67 -0.12 -3.44 16 12 C -0.12 -2.28 5.76 -26.76 -0.15 -2.44 16 13 C -0.11 -1.96 5.84 -26.68 -0.16 -2.11 16 14 C -0.09 -1.71 4.89 -26.80 -0.13 -1.84 16 15 C -0.05 -1.09 0.42 -154.37 -0.06 -1.15 16 16 C -0.12 -2.37 6.50 -26.07 -0.17 -2.54 16 17 C -0.15 -2.58 7.73 -25.85 -0.20 -2.78 16 18 C -0.12 -2.36 6.87 -26.09 -0.18 -2.54 16 19 H 0.27 7.36 3.42 -40.82 -0.14 7.22 16 20 H 0.36 9.45 6.10 45.56 0.28 9.72 16 21 H 0.05 1.21 7.97 -51.93 -0.41 0.80 16 22 H 0.07 1.69 5.56 -51.93 -0.29 1.40 16 23 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 1.17 7.69 -51.93 -0.40 0.77 16 25 H 0.05 0.93 7.38 -51.93 -0.38 0.55 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.80 7.31 -51.93 -0.38 0.42 16 28 H 0.06 1.22 8.08 -51.93 -0.42 0.81 16 29 H 0.10 2.04 6.00 -51.93 -0.31 1.73 16 30 H 0.05 0.88 7.36 -51.93 -0.38 0.50 16 31 H 0.06 1.02 7.61 -51.93 -0.40 0.63 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.93 8.09 -51.93 -0.42 0.51 16 34 H 0.09 2.09 6.64 -51.93 -0.34 1.74 16 LS Contribution 249.40 15.07 3.76 3.76 Total: -1.00 -27.85 249.40 -6.91 -34.76 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -4.35 Total: 11.01 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: -1.51 Total: -28.24 kcal Atomic # 7 Polarization: -25.88 SS G_CDS: 0.70 Total: -25.18 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.42 Total: -15.52 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -5.08 Total: 19.42 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -27.85 -6.91 -34.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260946905.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.070 kcal (2) G-P(sol) polarization free energy of solvation -27.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds