Wall clock time and date at job start Mon Mar 30 2020 02:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99991 * 2 1 4 4 H 1.48495 * 109.47212 * 89.99553 * 3 2 1 5 5 H 1.48504 * 109.47179 * 329.99914 * 3 2 1 6 6 H 1.48498 * 109.47522 * 210.00114 * 3 2 1 7 7 C 1.37877 * 120.00374 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00494 * 178.21694 * 7 2 1 9 9 C 1.50703 * 119.99713 * 358.22179 * 7 2 1 10 10 O 1.42899 * 109.51280 * 57.58062 * 9 7 2 11 11 C 1.53150 * 109.51119 * 297.47618 * 9 7 2 12 12 C 1.52972 * 109.42430 * 182.22820 * 11 9 7 13 13 C 1.52964 * 109.70425 * 61.69459 * 12 11 9 14 14 C 1.53140 * 109.43954 * 298.31542 * 13 12 11 15 15 C 1.52726 * 109.51135 * 177.72911 * 9 7 2 16 16 C 1.53425 * 113.49224 * 45.27392 * 15 9 7 17 17 C 1.53844 * 86.96872 * 220.13126 * 16 15 9 18 18 C 1.53393 * 113.55804 * 307.41550 * 15 9 7 19 19 H 0.97003 * 119.99630 * 185.50381 * 1 2 3 20 20 H 0.96699 * 113.99808 * 293.57169 * 10 9 7 21 21 H 1.08992 * 109.47969 * 302.21676 * 11 9 7 22 22 H 1.09002 * 109.47389 * 62.23527 * 11 9 7 23 23 H 1.08999 * 109.43187 * 181.76837 * 12 11 9 24 24 H 1.09004 * 109.43606 * 301.62239 * 12 11 9 25 25 H 1.09000 * 109.47610 * 58.30489 * 13 12 11 26 26 H 1.08998 * 109.47744 * 178.31606 * 13 12 11 27 27 H 1.09002 * 109.51369 * 177.75228 * 14 13 12 28 28 H 1.09002 * 109.51083 * 297.85419 * 14 13 12 29 29 H 1.09001 * 113.63241 * 334.65282 * 16 15 9 30 30 H 1.09004 * 113.62894 * 105.61006 * 16 15 9 31 31 H 1.09004 * 113.60344 * 270.58327 * 17 16 15 32 32 H 1.08997 * 113.67561 * 139.73080 * 17 16 15 33 33 H 1.09001 * 113.62813 * 254.32444 * 18 15 9 34 34 H 1.08997 * 113.63475 * 25.28251 * 18 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4000 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4403 -0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0842 -1.1943 -0.0286 9 6 1.2517 -2.4988 0.0416 10 8 0.3574 -2.5691 -1.0708 11 6 0.4539 -2.5881 1.3458 12 6 -0.2654 -3.9367 1.4109 13 6 0.7620 -5.0699 1.4069 14 6 1.5656 -5.0248 0.1041 15 6 2.2407 -3.6607 -0.0235 16 6 3.4500 -3.4873 0.9047 17 6 4.3046 -4.0693 -0.2345 18 6 3.2183 -3.5684 -1.2019 19 1 -0.4850 -0.8362 0.0806 20 1 -0.3599 -1.9213 -1.0403 21 1 1.1323 -2.4968 2.1939 22 1 -0.2799 -1.7827 1.3789 23 1 -0.8582 -3.9878 2.3241 24 1 -0.9221 -4.0395 0.5469 25 1 1.4370 -4.9514 2.2546 26 1 0.2471 -6.0275 1.4835 27 1 2.3247 -5.8069 0.1173 28 1 0.8964 -5.1810 -0.7420 29 1 3.6786 -2.4466 1.1346 30 1 3.4144 -4.1201 1.7915 31 1 4.3935 -5.1553 -0.2023 32 1 5.2651 -3.5697 -0.3603 33 1 2.9966 -4.2665 -2.0092 34 1 3.3829 -2.5502 -1.5544 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260946905.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:26 Heat of formation + Delta-G solvation = -59.395193 kcal Electronic energy + Delta-G solvation = -15394.006122 eV Core-core repulsion = 13098.136355 eV Total energy + Delta-G solvation = -2295.869767 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.48488 -37.70352 -35.58664 -34.03353 -30.70603 -29.33278 -26.57316 -26.36039 -23.85219 -22.61416 -21.25335 -19.79462 -18.51514 -17.00260 -16.52599 -16.05882 -15.79664 -15.47925 -14.77191 -14.26810 -14.17157 -13.64143 -13.40653 -13.04699 -12.71535 -12.62574 -12.53235 -12.18436 -11.96725 -11.82516 -11.78886 -11.72199 -11.54241 -10.99736 -10.80623 -10.56147 -10.20514 -9.72071 -8.43632 -6.28800 1.52199 1.58582 1.76077 2.56527 3.12416 3.70054 3.84416 3.92757 4.04832 4.14888 4.25909 4.33337 4.43835 4.66522 4.70623 4.75753 4.85736 4.92513 5.00200 5.07131 5.12183 5.17333 5.19180 5.25119 5.33808 5.39399 5.58183 5.62545 5.67872 5.83138 6.18115 6.29727 6.68310 7.22222 7.48711 8.80955 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.032869 B = 0.014712 C = 0.011851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.656476 B = 1902.811245 C = 2362.071228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.021 4.021 3 Si 1.107 2.893 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.609 4.609 8 H 0.054 0.946 9 C 0.241 3.759 10 O -0.597 6.597 11 C -0.139 4.139 12 C -0.114 4.114 13 C -0.107 4.107 14 C -0.088 4.088 15 C -0.062 4.062 16 C -0.122 4.122 17 C -0.125 4.125 18 C -0.126 4.126 19 H 0.265 0.735 20 H 0.357 0.643 21 H 0.046 0.954 22 H 0.038 0.962 23 H 0.061 0.939 24 H 0.046 0.954 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.601 -8.350 2.678 9.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.219 4.219 3 Si 0.931 3.069 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.647 4.647 8 H 0.072 0.928 9 C 0.202 3.798 10 O -0.405 6.405 11 C -0.178 4.178 12 C -0.151 4.151 13 C -0.144 4.144 14 C -0.125 4.125 15 C -0.063 4.063 16 C -0.159 4.159 17 C -0.162 4.162 18 C -0.163 4.163 19 H 0.080 0.920 20 H 0.205 0.795 21 H 0.065 0.935 22 H 0.057 0.943 23 H 0.080 0.920 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.820 -7.243 2.432 9.034 hybrid contribution -0.575 -0.641 0.102 0.867 sum 4.246 -7.884 2.534 9.306 Atomic orbital electron populations 1.71023 1.07643 1.30796 1.49280 1.26925 0.96682 1.05781 0.92521 0.83037 0.74215 0.72288 0.77333 1.20192 1.21378 1.20279 1.22895 0.94988 0.93355 1.53462 0.92780 1.18898 0.86231 0.92845 0.81785 1.86282 1.43630 1.60758 1.49830 1.22222 0.99138 0.96482 0.99921 1.21470 0.98068 0.95014 1.00568 1.21463 0.97422 0.97970 0.97564 1.21250 0.98698 0.94977 0.97614 1.21438 0.93380 0.94202 0.97237 1.22878 0.95369 1.00985 0.96659 1.22824 0.96832 1.00887 0.95701 1.22736 0.97083 1.00155 0.96352 0.91976 0.79462 0.93520 0.94297 0.92046 0.93511 0.91758 0.90351 0.90492 0.93435 0.91139 0.91172 0.88652 0.91427 0.92808 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.66 12.66 21.45 0.27 -54.38 16 2 C -0.02 -1.17 5.24 84.65 0.44 -0.73 16 3 Si 1.11 49.99 29.90 68.60 2.05 52.04 16 4 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.61 -32.76 6.45 25.60 0.17 -32.59 16 8 H 0.05 2.90 5.41 -2.91 -0.02 2.89 16 9 C 0.24 11.70 0.26 -11.58 0.00 11.69 16 10 O -0.60 -31.37 12.05 -148.98 -1.79 -33.16 16 11 C -0.14 -6.38 4.48 30.63 0.14 -6.25 16 12 C -0.11 -4.26 5.76 30.57 0.18 -4.08 16 13 C -0.11 -3.38 5.84 30.63 0.18 -3.20 16 14 C -0.09 -3.03 4.89 30.55 0.15 -2.88 16 15 C -0.06 -2.53 0.42 -52.09 -0.02 -2.55 16 16 C -0.12 -4.44 6.50 31.02 0.20 -4.24 16 17 C -0.13 -3.96 7.73 31.16 0.24 -3.72 16 18 C -0.13 -4.98 6.87 31.01 0.21 -4.77 16 19 H 0.26 15.07 3.42 -92.71 -0.32 14.75 16 20 H 0.36 19.33 6.10 -74.06 -0.45 18.88 16 21 H 0.05 2.14 7.97 -2.39 -0.02 2.12 16 22 H 0.04 1.98 5.56 -2.39 -0.01 1.97 16 23 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.05 1.84 7.69 -2.39 -0.02 1.82 16 25 H 0.06 1.93 7.38 -2.39 -0.02 1.92 16 26 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.08 2.21 7.31 -2.39 -0.02 2.20 16 28 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 29 H 0.07 2.93 6.00 -2.39 -0.01 2.92 16 30 H 0.07 2.25 7.36 -2.39 -0.02 2.23 16 31 H 0.10 2.50 7.61 -2.38 -0.02 2.48 16 32 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.05 2.01 8.09 -2.39 -0.02 2.00 16 34 H 0.06 2.70 6.64 -2.39 -0.02 2.69 16 Total: -1.00 -60.32 249.40 3.50 -56.82 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: 1.09 Total: 32.00 kcal Atomic # 6 Polarization: -55.19 SS G_CDS: 1.88 Total: -53.31 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 0.27 Total: -54.38 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -1.79 Total: -33.16 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 2.05 Total: 52.04 kcal Total: -60.32 3.50 -56.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260946905.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.574 kcal (2) G-P(sol) polarization free energy of solvation -60.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds