Wall clock time and date at job start Mon Mar 30 2020 02:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46897 * 110.99984 * 2 1 4 4 C 1.46893 * 110.99758 * 123.95739 * 2 1 3 5 5 C 1.53004 * 109.47174 * 169.99769 * 4 2 1 6 6 C 1.50696 * 109.47615 * 180.02562 * 5 4 2 7 7 N 1.30798 * 125.15788 * 89.97340 * 6 5 4 8 8 C 1.33324 * 109.25623 * 180.02562 * 7 6 5 9 9 C 1.39418 * 107.08239 * 359.97438 * 8 7 6 10 10 C 1.39852 * 126.87446 * 180.02562 * 9 8 7 11 11 H 1.07998 * 120.00116 * 179.97438 * 10 9 8 12 12 C 1.40169 * 119.99799 * 359.96405 * 10 9 8 13 13 N 1.30801 * 119.99785 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00105 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46691 * 60.00117 * 14 12 10 16 16 H 1.48493 * 109.46997 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47132 * 300.00365 * 14 12 10 18 18 O 1.34014 * 125.15034 * 270.00114 * 6 5 4 19 19 H 1.09003 * 109.46849 * 296.04279 * 1 2 3 20 20 H 1.08996 * 109.46927 * 56.03997 * 1 2 3 21 21 H 1.08998 * 109.47280 * 176.04993 * 1 2 3 22 22 H 1.09004 * 109.46918 * 183.95592 * 3 2 1 23 23 H 1.08997 * 109.47343 * 303.95272 * 3 2 1 24 24 H 1.08998 * 109.47257 * 63.95958 * 3 2 1 25 25 H 1.08994 * 109.47620 * 49.99981 * 4 2 1 26 26 H 1.08999 * 109.47446 * 289.99177 * 4 2 1 27 27 H 1.08999 * 109.47114 * 59.99471 * 5 4 2 28 28 H 1.09004 * 109.46889 * 300.00174 * 5 4 2 29 29 H 1.08003 * 126.45846 * 179.97438 * 8 7 6 30 30 H 0.97002 * 119.99970 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5045 -0.9555 0.9703 6 6 4.0444 -1.7419 2.1369 7 7 4.1405 -3.0454 2.1867 8 6 4.6588 -3.4035 3.3617 9 6 4.8959 -2.2317 4.0789 10 6 5.4357 -2.1297 5.3650 11 1 5.5726 -1.1588 5.8178 12 6 5.7988 -3.2876 6.0665 13 7 5.6323 -4.4635 5.5184 14 14 6.5204 -3.1514 7.7841 15 1 5.5437 -2.4809 8.6795 16 1 6.8175 -4.5098 8.3053 17 1 7.7728 -2.3553 7.7331 18 8 4.4986 -1.2116 3.2808 19 1 -0.3633 0.4512 0.9234 20 1 -0.3633 0.5741 -0.8523 21 1 -0.3634 -1.0252 -0.0708 22 1 3.0829 1.3432 -0.0709 23 1 1.5899 1.9163 -0.8524 24 1 1.7045 1.8723 0.9233 25 1 1.5090 -1.7407 1.1755 26 1 1.7976 -0.2248 2.0627 27 1 3.9910 0.0192 0.9322 28 1 3.7023 -1.4967 0.0450 29 1 4.8575 -4.4114 3.6950 30 1 5.8839 -5.2648 6.0037 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260953385.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:09 Heat of formation + Delta-G solvation = 4.105659 kcal Electronic energy + Delta-G solvation = -13498.698841 eV Core-core repulsion = 11102.042334 eV Total energy + Delta-G solvation = -2396.656507 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.95020 -37.39337 -34.07990 -32.84218 -31.44258 -28.57663 -27.48612 -25.52816 -23.42952 -20.95685 -20.73590 -19.32243 -17.58875 -15.76382 -15.38121 -15.20921 -14.90405 -14.29186 -14.08040 -13.50332 -13.01320 -12.38061 -12.21576 -12.03895 -11.65920 -11.57131 -11.45096 -11.29386 -11.05845 -10.65486 -10.46323 -10.27567 -9.62062 -9.44101 -8.67532 -8.23696 -7.28577 -6.90761 -4.53564 2.81465 2.97028 3.00823 3.34574 3.74457 4.05287 4.45277 4.73888 5.13030 5.24597 5.31306 5.45726 5.49831 5.70500 5.82213 5.90567 5.91362 5.92924 6.08584 6.45845 6.56088 6.89200 7.13670 7.16487 7.24021 7.49417 7.61509 8.19554 8.36628 8.58814 8.72253 9.77917 10.04504 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.067618 B = 0.006250 C = 0.006047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.991482 B = 4478.650256 C = 4629.138146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.549 5.549 3 C 0.020 3.980 4 C 0.059 3.941 5 C 0.015 3.985 6 C 0.015 3.985 7 N -0.455 5.455 8 C -0.172 4.172 9 C 0.141 3.859 10 C -0.423 4.423 11 H 0.083 0.917 12 C 0.068 3.932 13 N -0.787 5.787 14 Si 0.941 3.059 15 H -0.263 1.263 16 H -0.274 1.274 17 H -0.263 1.263 18 O -0.244 6.244 19 H 0.023 0.977 20 H 0.065 0.935 21 H 0.068 0.932 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.024 0.976 25 H 0.079 0.921 26 H 0.034 0.966 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.193 0.807 30 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.688 6.188 -3.614 8.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.273 5.273 3 C -0.128 4.128 4 C -0.069 4.069 5 C -0.024 4.024 6 C -0.185 4.185 7 N -0.184 5.184 8 C -0.319 4.319 9 C 0.088 3.912 10 C -0.454 4.454 11 H 0.101 0.899 12 C -0.150 4.150 13 N -0.414 5.414 14 Si 0.764 3.236 15 H -0.188 1.188 16 H -0.199 1.199 17 H -0.187 1.187 18 O -0.136 6.136 19 H 0.041 0.959 20 H 0.083 0.917 21 H 0.087 0.913 22 H 0.091 0.909 23 H 0.082 0.918 24 H 0.043 0.957 25 H 0.097 0.903 26 H 0.053 0.947 27 H 0.085 0.915 28 H 0.107 0.893 29 H 0.209 0.791 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.714 5.405 -4.545 8.491 hybrid contribution 0.246 0.799 2.130 2.289 sum -4.468 6.205 -2.414 8.018 Atomic orbital electron populations 1.22356 0.87649 1.02213 1.00058 1.61995 1.07604 1.13732 1.43941 1.22448 1.01382 0.88951 1.00056 1.22222 0.95928 0.98228 0.90502 1.19331 0.92824 0.97845 0.92414 1.24534 1.14700 0.89047 0.90200 1.69575 1.14552 1.11165 1.23094 1.24159 1.16347 1.00534 0.90815 1.20733 0.94637 0.84443 0.91386 1.18339 1.36230 0.94918 0.95879 0.89854 1.25847 0.94200 0.93985 1.00933 1.69582 1.35006 0.99055 1.37730 0.85826 0.79875 0.78488 0.79386 1.18760 1.19880 1.18719 1.84303 1.65755 1.37870 1.25670 0.95866 0.91657 0.91335 0.90881 0.91760 0.95730 0.90270 0.94738 0.91474 0.89278 0.79071 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.57 60.07 0.57 0.88 16 2 N -0.55 -7.96 5.02 -251.26 -1.26 -9.22 16 3 C 0.02 0.25 9.32 60.06 0.56 0.81 16 4 C 0.06 1.03 4.94 -3.83 -0.02 1.01 16 5 C 0.01 0.28 5.77 -27.88 -0.16 0.12 16 6 C 0.01 0.37 7.55 -12.72 -0.10 0.27 16 7 N -0.45 -12.65 11.23 -10.03 -0.11 -12.76 16 8 C -0.17 -5.05 10.89 -16.46 -0.18 -5.23 16 9 C 0.14 4.11 7.08 -38.54 -0.27 3.84 16 10 C -0.42 -11.59 9.45 -38.25 -0.36 -11.95 16 11 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 12 C 0.07 1.71 5.50 -17.27 -0.09 1.62 16 13 N -0.79 -20.25 10.32 55.56 0.57 -19.68 16 14 Si 0.94 18.38 29.56 -169.99 -5.03 13.36 16 15 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 16 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 17 H -0.26 -5.05 7.11 56.52 0.40 -4.64 16 18 O -0.24 -6.80 10.81 3.10 0.03 -6.77 16 19 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 20 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 21 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 22 H 0.07 0.91 6.47 -51.93 -0.34 0.58 16 23 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 24 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.08 1.45 8.06 -51.93 -0.42 1.03 16 26 H 0.03 0.63 8.12 -51.93 -0.42 0.20 16 27 H 0.07 1.19 6.55 -51.93 -0.34 0.85 16 28 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 29 H 0.19 5.66 5.76 -52.48 -0.30 5.35 16 30 H 0.29 6.57 8.30 -40.82 -0.34 6.23 16 LS Contribution 258.22 15.07 3.89 3.89 Total: -1.00 -30.16 258.22 -5.85 -36.01 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -3.90 Total: 3.79 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -0.05 Total: -8.62 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: -0.80 Total: -41.66 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: 0.03 Total: -6.77 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.36 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.16 -5.85 -36.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260953385.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.119 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds