Wall clock time and date at job start Mon Mar 30 2020 02:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46897 * 110.99984 * 2 1 4 4 C 1.46893 * 110.99758 * 123.95739 * 2 1 3 5 5 C 1.53004 * 109.47174 * 169.99769 * 4 2 1 6 6 C 1.50696 * 109.47615 * 180.02562 * 5 4 2 7 7 N 1.30798 * 125.15788 * 89.97340 * 6 5 4 8 8 C 1.33324 * 109.25623 * 180.02562 * 7 6 5 9 9 C 1.39418 * 107.08239 * 359.97438 * 8 7 6 10 10 C 1.39852 * 126.87446 * 180.02562 * 9 8 7 11 11 H 1.07998 * 120.00116 * 179.97438 * 10 9 8 12 12 C 1.40169 * 119.99799 * 359.96405 * 10 9 8 13 13 N 1.30801 * 119.99785 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00105 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46691 * 60.00117 * 14 12 10 16 16 H 1.48493 * 109.46997 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47132 * 300.00365 * 14 12 10 18 18 O 1.34014 * 125.15034 * 270.00114 * 6 5 4 19 19 H 1.09003 * 109.46849 * 296.04279 * 1 2 3 20 20 H 1.08996 * 109.46927 * 56.03997 * 1 2 3 21 21 H 1.08998 * 109.47280 * 176.04993 * 1 2 3 22 22 H 1.09004 * 109.46918 * 183.95592 * 3 2 1 23 23 H 1.08997 * 109.47343 * 303.95272 * 3 2 1 24 24 H 1.08998 * 109.47257 * 63.95958 * 3 2 1 25 25 H 1.08994 * 109.47620 * 49.99981 * 4 2 1 26 26 H 1.08999 * 109.47446 * 289.99177 * 4 2 1 27 27 H 1.08999 * 109.47114 * 59.99471 * 5 4 2 28 28 H 1.09004 * 109.46889 * 300.00174 * 5 4 2 29 29 H 1.08003 * 126.45846 * 179.97438 * 8 7 6 30 30 H 0.97002 * 119.99970 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5045 -0.9555 0.9703 6 6 4.0444 -1.7419 2.1369 7 7 4.1405 -3.0454 2.1867 8 6 4.6588 -3.4035 3.3617 9 6 4.8959 -2.2317 4.0789 10 6 5.4357 -2.1297 5.3650 11 1 5.5726 -1.1588 5.8178 12 6 5.7988 -3.2876 6.0665 13 7 5.6323 -4.4635 5.5184 14 14 6.5204 -3.1514 7.7841 15 1 5.5437 -2.4809 8.6795 16 1 6.8175 -4.5098 8.3053 17 1 7.7728 -2.3553 7.7331 18 8 4.4986 -1.2116 3.2808 19 1 -0.3633 0.4512 0.9234 20 1 -0.3633 0.5741 -0.8523 21 1 -0.3634 -1.0252 -0.0708 22 1 3.0829 1.3432 -0.0709 23 1 1.5899 1.9163 -0.8524 24 1 1.7045 1.8723 0.9233 25 1 1.5090 -1.7407 1.1755 26 1 1.7976 -0.2248 2.0627 27 1 3.9910 0.0192 0.9322 28 1 3.7023 -1.4967 0.0450 29 1 4.8575 -4.4114 3.6950 30 1 5.8839 -5.2648 6.0037 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260953385.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:09 Heat of formation + Delta-G solvation = -19.009704 kcal Electronic energy + Delta-G solvation = -13499.701198 eV Core-core repulsion = 11102.042334 eV Total energy + Delta-G solvation = -2397.658864 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.06307 -38.59465 -36.06436 -34.92340 -33.08767 -30.54290 -28.46878 -27.22029 -25.07850 -22.89187 -22.30480 -21.23381 -19.64203 -17.62478 -17.03742 -16.67772 -16.43183 -15.84738 -15.50868 -15.23158 -14.49301 -14.05769 -14.00719 -13.32494 -13.10432 -13.03043 -12.83846 -12.59653 -12.53582 -12.46549 -12.04362 -11.86202 -11.60900 -11.40349 -10.83301 -9.43236 -9.35178 -8.82171 -6.63656 1.00903 1.36681 1.54344 1.61674 2.09700 2.34087 2.60447 3.04297 3.11101 3.90561 4.02774 4.14910 4.33452 4.48182 4.53542 4.68128 4.73904 4.85669 4.96187 4.98831 5.00599 5.05497 5.16842 5.39911 5.52983 5.96706 6.09004 6.14023 6.29843 6.44460 6.61901 7.64147 8.16015 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.067618 B = 0.006250 C = 0.006047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.991482 B = 4478.650256 C = 4629.138146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.554 5.554 3 C 0.017 3.983 4 C 0.072 3.928 5 C 0.018 3.982 6 C 0.029 3.971 7 N -0.478 5.478 8 C -0.213 4.213 9 C 0.113 3.887 10 C -0.454 4.454 11 H 0.092 0.908 12 C 0.027 3.973 13 N -0.812 5.812 14 Si 1.024 2.976 15 H -0.255 1.255 16 H -0.258 1.258 17 H -0.254 1.254 18 O -0.258 6.258 19 H 0.024 0.976 20 H 0.090 0.910 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.090 0.910 24 H 0.024 0.976 25 H 0.065 0.935 26 H 0.023 0.977 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.182 0.818 30 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.730 7.291 -3.177 9.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.278 5.278 3 C -0.131 4.131 4 C -0.057 4.057 5 C -0.021 4.021 6 C -0.172 4.172 7 N -0.206 5.206 8 C -0.356 4.356 9 C 0.060 3.940 10 C -0.483 4.483 11 H 0.110 0.890 12 C -0.189 4.189 13 N -0.439 5.439 14 Si 0.841 3.159 15 H -0.179 1.179 16 H -0.182 1.182 17 H -0.178 1.178 18 O -0.150 6.150 19 H 0.043 0.957 20 H 0.109 0.891 21 H 0.086 0.914 22 H 0.090 0.910 23 H 0.108 0.892 24 H 0.042 0.958 25 H 0.083 0.917 26 H 0.041 0.959 27 H 0.107 0.893 28 H 0.117 0.883 29 H 0.198 0.802 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.768 6.481 -4.130 9.044 hybrid contribution 0.213 0.479 1.897 1.968 sum -4.555 6.960 -2.233 8.612 Atomic orbital electron populations 1.22453 0.85951 1.02781 1.01246 1.61985 1.09178 1.14744 1.41926 1.22551 1.01435 0.87916 1.01200 1.21928 0.94271 0.98101 0.91371 1.19575 0.94305 0.98101 0.90081 1.25790 1.11944 0.89059 0.90435 1.69540 1.15711 1.12485 1.22897 1.24029 1.19148 1.00416 0.92041 1.21220 0.95626 0.84693 0.92442 1.18860 1.37162 0.96491 0.95816 0.89007 1.27096 0.93597 0.92769 1.05435 1.69629 1.34294 1.00180 1.39754 0.84632 0.79079 0.79358 0.72821 1.17866 1.18187 1.17800 1.84310 1.66298 1.37996 1.26428 0.95723 0.89130 0.91412 0.91039 0.89178 0.95776 0.91652 0.95885 0.89320 0.88341 0.80184 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.57 127.69 1.22 1.73 16 2 N -0.55 -14.94 5.02 -948.86 -4.76 -19.70 16 3 C 0.02 0.37 9.32 127.69 1.19 1.57 16 4 C 0.07 2.45 4.94 86.31 0.43 2.88 16 5 C 0.02 0.68 5.77 29.85 0.17 0.85 16 6 C 0.03 1.51 7.55 88.26 0.67 2.18 16 7 N -0.48 -27.33 11.23 -300.14 -3.37 -30.70 16 8 C -0.21 -12.95 10.89 84.75 0.92 -12.03 16 9 C 0.11 6.78 7.08 22.95 0.16 6.94 16 10 C -0.45 -25.26 9.45 23.13 0.22 -25.04 16 11 H 0.09 4.77 7.85 -2.91 -0.02 4.74 16 12 C 0.03 1.33 5.50 85.32 0.47 1.80 16 13 N -0.81 -42.26 10.32 21.87 0.23 -42.04 16 14 Si 1.02 36.45 29.56 68.60 2.03 38.48 16 15 H -0.25 -8.71 7.11 99.48 0.71 -8.00 16 16 H -0.26 -8.46 7.11 99.48 0.71 -7.75 16 17 H -0.25 -8.68 7.11 99.48 0.71 -7.97 16 18 O -0.26 -14.64 10.81 -11.82 -0.13 -14.77 16 19 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 20 H 0.09 1.53 8.12 -2.39 -0.02 1.51 16 21 H 0.07 1.48 8.12 -2.39 -0.02 1.46 16 22 H 0.07 1.61 6.47 -2.38 -0.02 1.59 16 23 H 0.09 1.56 8.12 -2.39 -0.02 1.54 16 24 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.06 2.38 8.06 -2.39 -0.02 2.36 16 26 H 0.02 0.83 8.12 -2.39 -0.02 0.81 16 27 H 0.09 2.99 6.55 -2.39 -0.02 2.97 16 28 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 29 H 0.18 11.18 5.76 -2.91 -0.02 11.17 16 30 H 0.30 13.68 8.30 -92.71 -0.77 12.91 16 Total: -1.00 -66.49 258.22 0.57 -65.92 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 1.13 Total: 21.92 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: 5.45 Total: -19.12 kcal Atomic # 7 Polarization: -84.53 SS G_CDS: -7.91 Total: -92.43 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.13 Total: -14.77 kcal Atomic # 14 Polarization: 36.45 SS G_CDS: 2.03 Total: 38.48 kcal Total: -66.49 0.57 -65.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260953385.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.915 kcal (2) G-P(sol) polarization free energy of solvation -66.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds