Wall clock time and date at job start Mon Mar 30 2020 02:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47304 * 2 1 4 4 C 1.38698 * 125.98068 * 270.04230 * 3 2 1 5 5 C 1.32869 * 107.91058 * 179.97438 * 4 3 2 6 6 N 1.38691 * 107.91763 * 359.97438 * 5 4 3 7 7 C 1.46496 * 125.98684 * 180.25850 * 6 5 4 8 8 H 1.08996 * 109.47314 * 179.68898 * 7 6 5 9 9 C 1.53005 * 109.46936 * 59.69272 * 7 6 5 10 10 C 1.50697 * 109.47470 * 299.69756 * 7 6 5 11 11 H 1.08001 * 119.99755 * 359.97438 * 10 7 6 12 12 C 1.37870 * 120.00240 * 179.97438 * 10 7 6 13 13 N 1.31519 * 120.00123 * 0.02562 * 12 10 7 14 14 Si 1.86806 * 120.00213 * 179.97438 * 12 10 7 15 15 H 1.48506 * 109.46591 * 60.00180 * 14 12 10 16 16 H 1.48496 * 109.47116 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47315 * 300.00452 * 14 12 10 18 18 C 1.34752 * 125.98460 * 89.99602 * 3 2 1 19 19 O 1.21796 * 125.94887 * 0.06225 * 18 3 2 20 20 H 1.09002 * 109.47044 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47329 * 300.00283 * 1 2 3 22 22 H 1.09004 * 109.47234 * 60.00200 * 1 2 3 23 23 H 1.09001 * 109.47329 * 239.99717 * 2 1 3 24 24 H 1.08997 * 109.47303 * 120.00212 * 2 1 3 25 25 H 1.07992 * 126.04535 * 359.93974 * 4 3 2 26 26 H 1.08000 * 126.03806 * 180.02562 * 5 4 3 27 27 H 1.09004 * 109.46792 * 60.00194 * 9 7 6 28 28 H 1.08995 * 109.47264 * 179.97438 * 9 7 6 29 29 H 1.08996 * 109.47267 * 300.00215 * 9 7 6 30 30 H 0.96998 * 119.99902 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2892 2.1498 -1.1224 5 6 2.7101 3.3407 -0.7102 6 7 2.7089 3.3372 0.6767 7 6 3.0981 4.4545 1.5406 8 1 2.9900 4.1611 2.5848 9 6 2.1986 5.6585 1.2535 10 6 4.5335 4.8238 1.2685 11 1 5.0995 4.2802 0.5264 12 6 5.1243 5.8554 1.9667 13 7 4.4352 6.5170 2.8707 14 14 6.9039 6.3127 1.6298 15 1 7.0515 6.7117 0.2070 16 1 7.2978 7.4461 2.5046 17 1 7.7767 5.1443 1.9093 18 6 2.2822 2.1277 1.0904 19 8 2.1573 1.7713 2.2483 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 2.1783 1.8355 -2.1496 26 1 3.0008 4.1660 -1.3434 27 1 1.1603 5.3914 1.4505 28 1 2.4878 6.4896 1.8966 29 1 2.3065 5.9519 0.2094 30 1 4.8507 7.2430 3.3617 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261022200.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:30 Heat of formation + Delta-G solvation = 11.073176 kcal Electronic energy + Delta-G solvation = -14075.944878 eV Core-core repulsion = 11679.590505 eV Total energy + Delta-G solvation = -2396.354373 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.38836 -35.85794 -35.65430 -33.45388 -31.24379 -28.72138 -27.75255 -25.29874 -23.56727 -22.04979 -20.37535 -19.32523 -16.99628 -16.14046 -15.35704 -15.08701 -14.53681 -14.43201 -13.59260 -13.47018 -12.86961 -12.80025 -12.21375 -11.91824 -11.75430 -11.24017 -11.07661 -11.02466 -10.82724 -10.69536 -10.33694 -10.26252 -9.48951 -9.36832 -8.71368 -8.51952 -6.88085 -6.15200 -4.24615 2.97391 3.11561 3.26013 3.30760 3.34027 3.82869 4.29830 4.46366 5.00925 5.16210 5.30385 5.40631 5.60567 5.73452 5.91364 6.11546 6.23553 6.28073 6.50032 6.71248 6.87402 6.96668 7.19440 7.48159 7.64913 7.72893 7.99770 8.06728 8.43642 8.77206 9.24253 9.44007 10.90091 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.052022 B = 0.008546 C = 0.008304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.107697 B = 3275.470291 C = 3371.209156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.132 3.868 3 N -0.540 5.540 4 C -0.066 4.066 5 C 0.031 3.969 6 N -0.505 5.505 7 C 0.273 3.727 8 H 0.062 0.938 9 C -0.146 4.146 10 C -0.531 4.531 11 H 0.063 0.937 12 C 0.066 3.934 13 N -0.888 5.888 14 Si 0.905 3.095 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.276 1.276 18 C 0.637 3.363 19 O -0.590 6.590 20 H 0.066 0.934 21 H 0.061 0.939 22 H 0.058 0.942 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.167 0.833 26 H 0.171 0.829 27 H 0.015 0.985 28 H 0.099 0.901 29 H 0.035 0.965 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.761 -7.051 -9.115 12.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.010 3.990 3 N -0.262 5.262 4 C -0.189 4.189 5 C -0.096 4.096 6 N -0.220 5.220 7 C 0.174 3.826 8 H 0.080 0.920 9 C -0.205 4.205 10 C -0.569 4.569 11 H 0.081 0.919 12 C -0.136 4.136 13 N -0.525 5.525 14 Si 0.732 3.268 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.201 1.201 18 C 0.340 3.660 19 O -0.471 6.471 20 H 0.085 0.915 21 H 0.080 0.920 22 H 0.077 0.923 23 H 0.098 0.902 24 H 0.102 0.898 25 H 0.185 0.815 26 H 0.188 0.812 27 H 0.034 0.966 28 H 0.117 0.883 29 H 0.054 0.946 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.820 -7.119 -8.068 11.790 hybrid contribution 0.968 0.324 -0.332 1.074 sum -3.852 -6.795 -8.400 11.470 Atomic orbital electron populations 1.22162 0.95634 1.01996 1.02808 1.21303 0.94388 0.80166 1.03175 1.45355 1.61160 1.13160 1.06509 1.21423 1.13304 0.91964 0.92216 1.21707 1.04383 0.98416 0.85137 1.46254 1.56067 1.13330 1.06357 1.19073 0.94088 0.79640 0.89776 0.92046 1.22106 0.95734 1.01521 1.01108 1.21264 0.95578 1.17138 1.22952 0.91855 1.24893 0.98517 0.95662 0.94577 1.69863 1.36725 1.22050 1.23904 0.86445 0.84064 0.78032 0.78238 1.20053 1.21052 1.20136 1.16417 0.83033 0.81894 0.84646 1.90942 1.63919 1.75859 1.16362 0.91521 0.92017 0.92325 0.90153 0.89831 0.81522 0.81197 0.96635 0.88273 0.94619 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 10.24 37.16 0.38 -1.63 16 2 C 0.13 1.82 6.76 -4.04 -0.03 1.79 16 3 N -0.54 -9.80 2.78 -121.41 -0.34 -10.14 16 4 C -0.07 -1.05 11.49 -16.29 -0.19 -1.23 16 5 C 0.03 0.57 10.58 -16.30 -0.17 0.40 16 6 N -0.50 -11.80 2.62 -115.51 -0.30 -12.11 16 7 C 0.27 7.19 2.94 -69.08 -0.20 6.98 16 8 H 0.06 1.85 7.73 -51.93 -0.40 1.45 16 9 C -0.15 -3.52 9.02 37.16 0.34 -3.18 16 10 C -0.53 -14.52 8.52 -34.44 -0.29 -14.81 16 11 H 0.06 1.72 7.75 -52.49 -0.41 1.31 16 12 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 13 N -0.89 -24.89 11.32 55.43 0.63 -24.26 16 14 Si 0.90 20.96 29.54 -169.99 -5.02 15.93 16 15 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 C 0.64 15.07 8.52 -86.95 -0.74 14.32 16 19 O -0.59 -16.07 17.40 5.10 0.09 -15.98 16 20 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 21 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 25 H 0.17 1.86 8.06 -52.49 -0.42 1.44 16 26 H 0.17 2.77 8.06 -52.49 -0.42 2.35 16 27 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.10 2.57 6.07 -51.93 -0.32 2.26 16 29 H 0.03 0.78 7.94 -51.93 -0.41 0.37 16 30 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 261.04 15.07 3.93 3.93 Total: -1.00 -32.21 261.04 -6.06 -38.27 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -4.05 Total: 0.00 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -1.00 Total: 4.35 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -0.01 Total: -46.50 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: 0.09 Total: -15.98 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.21 -6.06 -38.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261022200.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.341 kcal (2) G-P(sol) polarization free energy of solvation -32.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds