Wall clock time and date at job start Mon Mar 30 2020 02:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47304 * 2 1 4 4 C 1.38698 * 125.98068 * 270.04230 * 3 2 1 5 5 C 1.32869 * 107.91058 * 179.97438 * 4 3 2 6 6 N 1.38691 * 107.91763 * 359.97438 * 5 4 3 7 7 C 1.46496 * 125.98684 * 180.25850 * 6 5 4 8 8 H 1.08996 * 109.47314 * 179.68898 * 7 6 5 9 9 C 1.53005 * 109.46936 * 59.69272 * 7 6 5 10 10 C 1.50697 * 109.47470 * 299.69756 * 7 6 5 11 11 H 1.08001 * 119.99755 * 359.97438 * 10 7 6 12 12 C 1.37870 * 120.00240 * 179.97438 * 10 7 6 13 13 N 1.31519 * 120.00123 * 0.02562 * 12 10 7 14 14 Si 1.86806 * 120.00213 * 179.97438 * 12 10 7 15 15 H 1.48506 * 109.46591 * 60.00180 * 14 12 10 16 16 H 1.48496 * 109.47116 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47315 * 300.00452 * 14 12 10 18 18 C 1.34752 * 125.98460 * 89.99602 * 3 2 1 19 19 O 1.21796 * 125.94887 * 0.06225 * 18 3 2 20 20 H 1.09002 * 109.47044 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47329 * 300.00283 * 1 2 3 22 22 H 1.09004 * 109.47234 * 60.00200 * 1 2 3 23 23 H 1.09001 * 109.47329 * 239.99717 * 2 1 3 24 24 H 1.08997 * 109.47303 * 120.00212 * 2 1 3 25 25 H 1.07992 * 126.04535 * 359.93974 * 4 3 2 26 26 H 1.08000 * 126.03806 * 180.02562 * 5 4 3 27 27 H 1.09004 * 109.46792 * 60.00194 * 9 7 6 28 28 H 1.08995 * 109.47264 * 179.97438 * 9 7 6 29 29 H 1.08996 * 109.47267 * 300.00215 * 9 7 6 30 30 H 0.96998 * 119.99902 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2892 2.1498 -1.1224 5 6 2.7101 3.3407 -0.7102 6 7 2.7089 3.3372 0.6767 7 6 3.0981 4.4545 1.5406 8 1 2.9900 4.1611 2.5848 9 6 2.1986 5.6585 1.2535 10 6 4.5335 4.8238 1.2685 11 1 5.0995 4.2802 0.5264 12 6 5.1243 5.8554 1.9667 13 7 4.4352 6.5170 2.8707 14 14 6.9039 6.3127 1.6298 15 1 7.0515 6.7117 0.2070 16 1 7.2978 7.4461 2.5046 17 1 7.7767 5.1443 1.9093 18 6 2.2822 2.1277 1.0904 19 8 2.1573 1.7713 2.2483 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 2.1783 1.8355 -2.1496 26 1 3.0008 4.1660 -1.3434 27 1 1.1603 5.3914 1.4505 28 1 2.4878 6.4896 1.8966 29 1 2.3065 5.9519 0.2094 30 1 4.8507 7.2430 3.3617 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261022200.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:30 Heat of formation + Delta-G solvation = -9.250937 kcal Electronic energy + Delta-G solvation = -14076.826197 eV Core-core repulsion = 11679.590505 eV Total energy + Delta-G solvation = -2397.235692 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.98479 -37.69085 -37.33035 -35.17913 -32.94044 -30.32406 -29.28919 -27.38330 -24.94182 -23.65808 -21.96073 -21.02792 -18.74703 -18.03183 -16.99007 -16.81247 -16.26936 -15.91316 -15.22230 -14.77284 -14.62310 -14.15255 -13.83047 -13.59451 -13.14746 -12.98758 -12.89561 -12.76151 -12.36721 -12.29634 -12.12960 -12.06369 -11.41076 -11.20094 -10.62431 -10.41829 -8.48582 -8.20292 -6.40782 1.41402 1.44511 1.51546 1.60582 1.63629 2.04498 2.39211 2.93030 3.06374 3.93096 4.25622 4.37453 4.42872 4.57613 4.67299 4.75732 4.81814 4.86350 4.93293 4.94195 5.22859 5.26031 5.42793 5.57849 5.73163 5.86543 6.03044 6.27268 6.64597 6.83838 7.27864 7.53510 8.82904 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.052022 B = 0.008546 C = 0.008304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.107697 B = 3275.470291 C = 3371.209156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.120 3.880 3 N -0.530 5.530 4 C -0.021 4.021 5 C -0.013 4.013 6 N -0.518 5.518 7 C 0.278 3.722 8 H 0.003 0.997 9 C -0.129 4.129 10 C -0.547 4.547 11 H 0.063 0.937 12 C 0.019 3.981 13 N -0.916 5.916 14 Si 0.974 3.026 15 H -0.258 1.258 16 H -0.280 1.280 17 H -0.279 1.279 18 C 0.607 3.393 19 O -0.647 6.647 20 H 0.099 0.901 21 H 0.024 0.976 22 H 0.073 0.927 23 H 0.130 0.870 24 H 0.066 0.934 25 H 0.230 0.770 26 H 0.191 0.809 27 H 0.020 0.980 28 H 0.078 0.922 29 H 0.055 0.945 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.428 -7.877 -12.342 15.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.000 4.000 3 N -0.250 5.250 4 C -0.143 4.143 5 C -0.137 4.137 6 N -0.234 5.234 7 C 0.177 3.823 8 H 0.021 0.979 9 C -0.188 4.188 10 C -0.585 4.585 11 H 0.081 0.919 12 C -0.181 4.181 13 N -0.554 5.554 14 Si 0.798 3.202 15 H -0.182 1.182 16 H -0.205 1.205 17 H -0.204 1.204 18 C 0.309 3.691 19 O -0.533 6.533 20 H 0.118 0.882 21 H 0.044 0.956 22 H 0.092 0.908 23 H 0.148 0.852 24 H 0.084 0.916 25 H 0.247 0.753 26 H 0.208 0.792 27 H 0.039 0.961 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.511 -7.973 -11.373 14.604 hybrid contribution 0.803 0.475 0.636 1.129 sum -3.708 -7.498 -10.737 13.611 Atomic orbital electron populations 1.22112 0.94112 1.03861 1.01704 1.21777 0.95654 0.77808 1.04748 1.45615 1.59418 1.14352 1.05608 1.22371 1.08410 0.89907 0.93603 1.22246 1.07563 1.00967 0.82903 1.46075 1.56374 1.12649 1.08277 1.18685 0.94695 0.81167 0.87728 0.97854 1.21878 0.95398 0.99791 1.01716 1.21461 0.96206 1.17515 1.23323 0.91920 1.25774 1.02835 0.95413 0.94107 1.69999 1.38524 1.22346 1.24522 0.85377 0.78405 0.77520 0.78947 1.18247 1.20493 1.20414 1.16809 0.84308 0.82724 0.85247 1.90865 1.66435 1.77033 1.18952 0.88220 0.95624 0.90803 0.85221 0.91583 0.75325 0.79194 0.96138 0.90376 0.92595 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 10.24 71.98 0.74 -2.66 16 2 C 0.12 2.97 6.76 86.38 0.58 3.55 16 3 N -0.53 -18.21 2.78 -656.20 -1.82 -20.03 16 4 C -0.02 -0.57 11.49 82.43 0.95 0.37 16 5 C -0.01 -0.45 10.58 82.43 0.87 0.42 16 6 N -0.52 -24.64 2.62 -637.54 -1.67 -26.31 16 7 C 0.28 15.25 2.94 44.25 0.13 15.38 16 8 H 0.00 0.23 7.73 -2.39 -0.02 0.21 16 9 C -0.13 -6.38 9.02 71.98 0.65 -5.73 16 10 C -0.55 -30.49 8.52 25.60 0.22 -30.27 16 11 H 0.06 3.42 7.75 -2.91 -0.02 3.39 16 12 C 0.02 1.05 5.30 84.65 0.45 1.50 16 13 N -0.92 -52.63 11.32 21.45 0.24 -52.39 16 14 Si 0.97 42.87 29.54 68.60 2.03 44.89 16 15 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 16 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 17 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 18 C 0.61 29.39 8.52 179.07 1.53 30.91 16 19 O -0.65 -37.40 17.40 -4.66 -0.08 -37.48 16 20 H 0.10 1.47 8.14 -2.39 -0.02 1.46 16 21 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 22 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.07 1.88 8.07 -2.39 -0.02 1.86 16 25 H 0.23 3.37 8.06 -2.91 -0.02 3.34 16 26 H 0.19 5.70 8.06 -2.91 -0.02 5.68 16 27 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.08 4.18 6.07 -2.39 -0.01 4.17 16 29 H 0.06 2.46 7.94 -2.39 -0.02 2.45 16 30 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -75.33 261.04 5.92 -69.41 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 1.11 Total: 8.44 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 6.11 Total: 13.47 kcal Atomic # 7 Polarization: -95.48 SS G_CDS: -3.25 Total: -98.73 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -0.08 Total: -37.48 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -75.33 5.92 -69.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261022200.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.161 kcal (2) G-P(sol) polarization free energy of solvation -75.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds