Wall clock time and date at job start Mon Mar 30 2020 02:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47125 * 2 1 4 4 C 1.46505 * 119.99961 * 269.99701 * 3 2 1 5 5 C 1.53002 * 109.46812 * 269.99903 * 4 3 2 6 6 C 1.37711 * 120.00463 * 89.99162 * 3 2 1 7 7 N 1.30838 * 125.17525 * 179.97438 * 6 3 2 8 8 C 1.36325 * 108.53647 * 180.02562 * 7 6 3 9 9 C 1.41148 * 126.62166 * 180.02562 * 8 7 6 10 10 H 1.07990 * 119.99959 * 359.97438 * 9 8 7 11 11 C 1.39661 * 119.99832 * 179.97438 * 9 8 7 12 12 N 1.31045 * 119.99880 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 119.99891 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47160 * 0.02562 * 13 11 9 15 15 H 1.48493 * 109.47244 * 120.00294 * 13 11 9 16 16 H 1.48502 * 109.47110 * 240.00212 * 13 11 9 17 17 C 1.38858 * 106.75628 * 0.02562 * 8 7 6 18 18 O 1.34335 * 125.16724 * 0.31609 * 6 3 2 19 19 H 1.08998 * 109.47681 * 300.00410 * 1 2 3 20 20 H 1.09000 * 109.46632 * 60.00545 * 1 2 3 21 21 H 1.09004 * 109.47135 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47681 * 239.99590 * 2 1 3 23 23 H 1.09000 * 109.46632 * 119.99455 * 2 1 3 24 24 H 1.09001 * 109.46790 * 29.99987 * 4 3 2 25 25 H 1.08999 * 109.47069 * 149.99704 * 4 3 2 26 26 H 1.08996 * 109.47075 * 299.99484 * 5 4 3 27 27 H 1.08995 * 109.47027 * 60.00209 * 5 4 3 28 28 H 1.09005 * 109.46886 * 179.97438 * 5 4 3 29 29 H 0.97002 * 119.99466 * 179.97438 * 12 11 9 30 30 H 1.08002 * 126.66493 * 179.97438 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.7076 1.8314 -1.7103 6 6 2.2477 2.0306 1.1926 7 7 2.6825 3.2589 1.3105 8 6 2.7878 3.5560 2.6368 9 6 3.2200 4.7786 3.1941 10 1 3.5087 5.5944 2.5481 11 6 3.2744 4.9333 4.5811 12 7 2.9246 3.9432 5.3650 13 14 3.8457 6.5516 5.3186 14 1 4.1809 7.5018 4.2278 15 1 2.7618 7.1235 6.1570 16 1 5.0483 6.3161 6.1574 17 6 2.3876 2.4235 3.3337 18 8 2.0652 1.4968 2.4117 19 1 -0.3634 0.5139 0.8899 20 1 -0.3632 0.5138 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.8932 -0.5138 0.8901 24 1 1.5818 1.6877 -2.0284 25 1 2.0955 3.1410 -1.1385 26 1 4.3883 2.2156 -0.9507 27 1 3.8746 0.7622 -1.8406 28 1 3.8892 2.3448 -2.6545 29 1 2.9627 4.0506 6.3283 30 1 2.3472 2.3073 4.4066 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261026031.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:10 Heat of formation + Delta-G solvation = -5.603801 kcal Electronic energy + Delta-G solvation = -13915.251030 eV Core-core repulsion = 11518.173489 eV Total energy + Delta-G solvation = -2397.077541 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.92689 -38.38088 -36.03434 -34.41807 -32.83293 -31.11332 -29.09118 -27.00721 -24.58995 -23.65593 -22.33132 -20.92606 -19.27204 -17.72246 -17.15443 -16.98279 -16.37464 -15.88143 -14.98319 -14.77436 -14.59073 -14.23196 -13.87950 -13.40159 -13.06237 -13.01501 -12.87147 -12.62143 -12.23728 -11.97361 -11.94271 -11.82958 -11.78349 -11.21021 -10.69778 -10.19643 -8.59183 -8.24819 -6.42984 1.28271 1.40232 1.56031 1.57456 1.59733 2.25099 2.31387 3.15656 3.44457 3.96338 4.19905 4.26551 4.48956 4.51377 4.59255 4.63673 4.80828 4.96595 5.01411 5.07338 5.20421 5.30381 5.39580 5.43228 5.71511 5.81505 6.16026 6.42845 6.54587 6.88364 6.94115 7.77569 8.45979 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.050026 B = 0.008239 C = 0.007376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.578377 B = 3397.785598 C = 3795.292706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.121 3.879 3 N -0.581 5.581 4 C 0.139 3.861 5 C -0.160 4.160 6 C 0.419 3.581 7 N -0.593 5.593 8 C 0.134 3.866 9 C -0.456 4.456 10 H 0.069 0.931 11 C 0.017 3.983 12 N -0.852 5.852 13 Si 1.009 2.991 14 H -0.263 1.263 15 H -0.262 1.262 16 H -0.262 1.262 17 C -0.273 4.273 18 O -0.256 6.256 19 H 0.022 0.978 20 H 0.069 0.931 21 H 0.091 0.909 22 H 0.118 0.882 23 H 0.055 0.945 24 H 0.116 0.884 25 H 0.055 0.945 26 H 0.021 0.979 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.288 0.712 30 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.046 -5.744 -9.382 11.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.001 4.001 3 N -0.311 5.311 4 C 0.018 3.982 5 C -0.218 4.218 6 C 0.122 3.878 7 N -0.339 5.339 8 C 0.020 3.980 9 C -0.489 4.489 10 H 0.087 0.913 11 C -0.192 4.192 12 N -0.483 5.483 13 Si 0.829 3.171 14 H -0.186 1.186 15 H -0.187 1.187 16 H -0.187 1.187 17 C -0.341 4.341 18 O -0.145 6.145 19 H 0.041 0.959 20 H 0.088 0.912 21 H 0.110 0.890 22 H 0.136 0.864 23 H 0.074 0.926 24 H 0.134 0.866 25 H 0.074 0.926 26 H 0.040 0.960 27 H 0.088 0.912 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -1.965 -5.524 -9.699 11.333 hybrid contribution 0.076 0.198 1.339 1.356 sum -1.889 -5.326 -8.359 10.090 Atomic orbital electron populations 1.22177 0.95486 1.03134 1.01338 1.21615 0.94829 0.79948 1.03695 1.45517 1.72900 1.14085 0.98634 1.21475 0.97613 0.97064 0.82055 1.22123 0.96148 1.02460 1.01112 1.22039 0.96106 0.87530 0.82149 1.71039 1.29950 1.12402 1.20467 1.19538 0.96901 0.95556 0.85973 1.18787 1.40799 0.96990 0.92374 0.91266 1.26743 0.93405 1.02645 0.96414 1.69406 1.39401 1.33480 1.05991 0.84748 0.78588 0.75701 0.78030 1.18640 1.18682 1.18676 1.26029 1.25607 0.89265 0.93243 1.84019 1.72144 1.43258 1.15112 0.95874 0.91243 0.88997 0.86436 0.92599 0.86644 0.92592 0.95984 0.91244 0.89333 0.90093 0.76464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 10.24 71.98 0.74 -3.23 16 2 C 0.12 3.32 6.27 86.38 0.54 3.86 16 3 N -0.58 -21.35 2.55 -821.98 -2.10 -23.45 16 4 C 0.14 4.09 6.24 86.38 0.54 4.63 16 5 C -0.16 -4.26 10.24 71.98 0.74 -3.52 16 6 C 0.42 21.30 8.38 179.29 1.50 22.80 16 7 N -0.59 -34.26 10.62 -306.36 -3.25 -37.52 16 8 C 0.13 8.42 6.88 39.31 0.27 8.69 16 9 C -0.46 -27.79 9.48 23.33 0.22 -27.57 16 10 H 0.07 4.15 7.84 -2.92 -0.02 4.13 16 11 C 0.02 0.95 5.49 85.15 0.47 1.41 16 12 N -0.85 -47.32 10.33 21.78 0.23 -47.10 16 13 Si 1.01 41.47 29.56 68.60 2.03 43.50 16 14 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 15 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 16 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 17 C -0.27 -16.59 11.18 67.97 0.76 -15.83 16 18 O -0.26 -14.18 10.10 -6.07 -0.06 -14.24 16 19 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 20 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 21 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 22 H 0.12 2.20 8.07 -2.39 -0.02 2.18 16 23 H 0.06 1.73 7.67 -2.39 -0.02 1.71 16 24 H 0.12 2.33 8.07 -2.39 -0.02 2.31 16 25 H 0.06 1.98 7.61 -2.39 -0.02 1.96 16 26 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.29 14.26 8.30 -92.71 -0.77 13.49 16 30 H 0.22 13.37 5.76 -2.91 -0.02 13.36 16 Total: -1.00 -73.06 261.06 3.74 -69.33 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 1.12 Total: 18.24 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 5.78 Total: -8.76 kcal Atomic # 7 Polarization: -102.94 SS G_CDS: -5.13 Total: -108.07 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.06 Total: -14.24 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -73.06 3.74 -69.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261026031.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.722 kcal (2) G-P(sol) polarization free energy of solvation -73.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds