Wall clock time and date at job start Mon Mar 30 2020 02:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 110.99988 * 2 1 4 4 C 1.46897 * 110.99888 * 123.95669 * 2 1 3 5 5 C 1.53001 * 109.47381 * 66.04279 * 4 2 1 6 6 N 1.46495 * 109.47446 * 179.97438 * 5 4 2 7 7 C 1.34831 * 125.67694 * 125.00023 * 6 5 4 8 8 N 1.30784 * 107.85822 * 180.02562 * 7 6 5 9 9 C 1.35096 * 107.27234 * 0.02562 * 8 7 6 10 10 C 1.41397 * 126.15383 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99820 * 180.02562 * 10 9 8 12 12 C 1.39873 * 120.00267 * 0.02562 * 10 9 8 13 13 N 1.30859 * 119.99569 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00094 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47021 * 0.02562 * 14 12 10 16 16 H 1.48494 * 109.46903 * 120.00321 * 14 12 10 17 17 H 1.48502 * 109.46992 * 239.99945 * 14 12 10 18 18 N 1.28852 * 125.67784 * 305.03091 * 6 5 4 19 19 H 1.08996 * 109.47172 * 296.04746 * 1 2 3 20 20 H 1.09000 * 109.47054 * 56.04510 * 1 2 3 21 21 H 1.09002 * 109.47531 * 176.04173 * 1 2 3 22 22 H 1.08995 * 109.47332 * 183.95220 * 3 2 1 23 23 H 1.08995 * 109.47433 * 303.95491 * 3 2 1 24 24 H 1.09009 * 109.47088 * 63.95676 * 3 2 1 25 25 H 1.09004 * 109.46877 * 306.04613 * 4 2 1 26 26 H 1.08999 * 109.47149 * 186.04750 * 4 2 1 27 27 H 1.09005 * 109.46729 * 59.99779 * 5 4 2 28 28 H 1.08999 * 109.47364 * 300.00340 * 5 4 2 29 29 H 1.07999 * 126.07328 * 359.97438 * 7 6 5 30 30 H 0.97006 * 119.99893 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.6314 -2.2427 0.9703 6 7 2.1569 -3.0067 2.1044 7 6 1.4355 -3.8061 2.9159 8 7 2.2487 -4.3128 3.8061 9 6 3.4816 -3.8252 3.5466 10 6 4.6622 -4.1151 4.2687 11 1 5.5996 -3.6673 3.9732 12 6 4.6162 -4.9818 5.3656 13 7 3.4805 -5.5247 5.7232 14 14 6.1761 -5.3653 6.3190 15 1 7.3175 -4.6307 5.7168 16 1 6.0079 -4.9445 7.7331 17 1 6.4427 -6.8252 6.2654 18 7 3.3853 -3.0262 2.4928 19 1 -0.3633 0.4512 0.9232 20 1 -0.3633 0.5740 -0.8524 21 1 -0.3634 -1.0252 -0.0709 22 1 3.0828 1.3433 -0.0708 23 1 1.5899 1.9163 -0.8524 24 1 1.7044 1.8723 0.9234 25 1 1.5611 -0.3873 2.0628 26 1 3.0797 -0.6611 1.1756 27 1 2.0657 -2.6214 0.0450 28 1 0.5471 -2.3475 0.9322 29 1 0.3744 -3.9939 2.8442 30 1 3.4487 -6.1261 6.4837 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261034373.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:04 Heat of formation + Delta-G solvation = 95.946404 kcal Electronic energy + Delta-G solvation = -13553.243885 eV Core-core repulsion = 11192.862642 eV Total energy + Delta-G solvation = -2360.381242 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.09339 -37.59126 -33.83217 -32.42640 -29.83793 -28.75129 -27.65502 -26.03641 -23.71841 -21.18294 -20.75579 -19.58554 -17.21590 -15.90734 -15.51153 -15.12463 -14.94115 -14.38245 -14.11735 -13.42678 -13.18127 -12.57416 -12.45783 -11.88742 -11.80183 -11.56460 -11.22498 -11.07008 -10.86632 -10.36875 -9.98884 -9.73256 -9.24030 -8.46343 -8.37604 -8.11731 -7.68275 -6.27286 -4.20645 3.13284 3.26597 3.32753 3.43126 3.63183 4.17757 4.30371 4.57336 4.93963 5.07974 5.21448 5.29853 5.43484 5.53768 5.57908 5.72577 5.77936 5.79305 5.80643 6.01404 6.14860 6.79943 6.91506 6.94828 7.32075 7.56691 8.25625 8.47180 8.64988 9.10953 9.20560 10.38900 10.69954 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.063760 B = 0.006563 C = 0.006102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.041569 B = 4265.638666 C = 4587.342267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.547 5.547 3 C 0.027 3.973 4 C 0.048 3.952 5 C 0.145 3.855 6 N -0.346 5.346 7 C 0.138 3.862 8 N -0.479 5.479 9 C 0.334 3.666 10 C -0.444 4.444 11 H 0.082 0.918 12 C 0.080 3.920 13 N -0.771 5.771 14 Si 0.911 3.089 15 H -0.263 1.263 16 H -0.277 1.277 17 H -0.277 1.277 18 N -0.441 5.441 19 H 0.026 0.974 20 H 0.067 0.933 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.025 0.975 25 H 0.037 0.963 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.182 0.818 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.784 8.309 -7.743 12.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.272 5.272 3 C -0.122 4.122 4 C -0.081 4.081 5 C 0.021 3.979 6 N -0.142 5.142 7 C -0.159 4.159 8 N -0.206 5.206 9 C 0.075 3.925 10 C -0.486 4.486 11 H 0.100 0.900 12 C -0.141 4.141 13 N -0.399 5.399 14 Si 0.736 3.264 15 H -0.187 1.187 16 H -0.203 1.203 17 H -0.202 1.202 18 N -0.280 5.280 19 H 0.044 0.956 20 H 0.086 0.914 21 H 0.089 0.911 22 H 0.089 0.911 23 H 0.086 0.914 24 H 0.043 0.957 25 H 0.055 0.945 26 H 0.109 0.891 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.199 0.801 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.331 8.077 -8.086 12.611 hybrid contribution -0.083 0.220 1.085 1.110 sum -5.414 8.296 -7.001 12.131 Atomic orbital electron populations 1.22481 0.87695 1.02406 1.00434 1.61931 1.07810 1.14016 1.43394 1.22356 1.01089 0.88463 1.00250 1.22361 1.02029 0.92828 0.90855 1.21284 0.98084 0.90401 0.88171 1.46715 1.06394 1.36337 1.24780 1.26368 0.99880 0.97045 0.92584 1.71935 1.01431 1.25031 1.22161 1.20939 0.92130 0.89969 0.89499 1.18204 0.92300 1.26894 1.11251 0.89959 1.25750 0.96995 0.94559 0.96793 1.70051 1.25271 1.22410 1.22168 0.86234 0.82318 0.78516 0.79328 1.18715 1.20281 1.20238 1.74620 0.99055 1.32439 1.21845 0.95570 0.91426 0.91080 0.91108 0.91424 0.95672 0.94484 0.89054 0.90186 0.90006 0.80119 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.32 60.07 0.56 0.75 16 2 N -0.55 -6.99 5.02 -251.26 -1.26 -8.25 16 3 C 0.03 0.29 9.57 60.06 0.57 0.87 16 4 C 0.05 0.75 5.08 -3.83 -0.02 0.73 16 5 C 0.14 2.39 6.37 -4.04 -0.03 2.37 16 6 N -0.35 -7.82 3.43 -62.54 -0.21 -8.04 16 7 C 0.14 3.23 12.56 -90.33 -1.13 2.09 16 8 N -0.48 -13.79 9.61 -13.79 -0.13 -13.92 16 9 C 0.33 9.99 7.62 -157.66 -1.20 8.79 16 10 C -0.44 -13.22 9.50 -37.77 -0.36 -13.58 16 11 H 0.08 2.37 7.84 -52.48 -0.41 1.96 16 12 C 0.08 2.22 5.49 -17.35 -0.10 2.13 16 13 N -0.77 -22.34 11.93 55.54 0.66 -21.67 16 14 Si 0.91 20.42 29.56 -169.99 -5.02 15.40 16 15 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 16 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 17 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 18 N -0.44 -11.98 11.90 30.88 0.37 -11.62 16 19 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 20 H 0.07 0.59 8.12 -51.93 -0.42 0.16 16 21 H 0.07 0.69 6.47 -51.93 -0.34 0.35 16 22 H 0.07 0.78 8.12 -51.93 -0.42 0.35 16 23 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 24 H 0.02 0.27 8.14 -51.92 -0.42 -0.15 16 25 H 0.04 0.61 8.12 -51.93 -0.42 0.19 16 26 H 0.09 1.63 8.03 -51.93 -0.42 1.21 16 27 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.08 1.09 6.47 -51.93 -0.34 0.75 16 29 H 0.18 3.28 8.06 -52.49 -0.42 2.86 16 30 H 0.27 7.06 8.30 -40.82 -0.34 6.72 16 LS Contribution 260.36 15.07 3.92 3.92 Total: -1.00 -34.04 260.36 -7.39 -41.43 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -4.01 Total: -1.40 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -1.70 Total: 4.14 kcal Atomic # 7 Polarization: -62.92 SS G_CDS: -0.58 Total: -63.50 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -34.04 -7.39 -41.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261034373.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.375 kcal (2) G-P(sol) polarization free energy of solvation -34.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds