Wall clock time and date at job start Mon Mar 30 2020 02:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 110.99988 * 2 1 4 4 C 1.46897 * 110.99888 * 123.95669 * 2 1 3 5 5 C 1.53001 * 109.47381 * 66.04279 * 4 2 1 6 6 N 1.46495 * 109.47446 * 179.97438 * 5 4 2 7 7 C 1.34831 * 125.67694 * 125.00023 * 6 5 4 8 8 N 1.30784 * 107.85822 * 180.02562 * 7 6 5 9 9 C 1.35096 * 107.27234 * 0.02562 * 8 7 6 10 10 C 1.41397 * 126.15383 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99820 * 180.02562 * 10 9 8 12 12 C 1.39873 * 120.00267 * 0.02562 * 10 9 8 13 13 N 1.30859 * 119.99569 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00094 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47021 * 0.02562 * 14 12 10 16 16 H 1.48494 * 109.46903 * 120.00321 * 14 12 10 17 17 H 1.48502 * 109.46992 * 239.99945 * 14 12 10 18 18 N 1.28852 * 125.67784 * 305.03091 * 6 5 4 19 19 H 1.08996 * 109.47172 * 296.04746 * 1 2 3 20 20 H 1.09000 * 109.47054 * 56.04510 * 1 2 3 21 21 H 1.09002 * 109.47531 * 176.04173 * 1 2 3 22 22 H 1.08995 * 109.47332 * 183.95220 * 3 2 1 23 23 H 1.08995 * 109.47433 * 303.95491 * 3 2 1 24 24 H 1.09009 * 109.47088 * 63.95676 * 3 2 1 25 25 H 1.09004 * 109.46877 * 306.04613 * 4 2 1 26 26 H 1.08999 * 109.47149 * 186.04750 * 4 2 1 27 27 H 1.09005 * 109.46729 * 59.99779 * 5 4 2 28 28 H 1.08999 * 109.47364 * 300.00340 * 5 4 2 29 29 H 1.07999 * 126.07328 * 359.97438 * 7 6 5 30 30 H 0.97006 * 119.99893 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.6314 -2.2427 0.9703 6 7 2.1569 -3.0067 2.1044 7 6 1.4355 -3.8061 2.9159 8 7 2.2487 -4.3128 3.8061 9 6 3.4816 -3.8252 3.5466 10 6 4.6622 -4.1151 4.2687 11 1 5.5996 -3.6673 3.9732 12 6 4.6162 -4.9818 5.3656 13 7 3.4805 -5.5247 5.7232 14 14 6.1761 -5.3653 6.3190 15 1 7.3175 -4.6307 5.7168 16 1 6.0079 -4.9445 7.7331 17 1 6.4427 -6.8252 6.2654 18 7 3.3853 -3.0262 2.4928 19 1 -0.3633 0.4512 0.9232 20 1 -0.3633 0.5740 -0.8524 21 1 -0.3634 -1.0252 -0.0709 22 1 3.0828 1.3433 -0.0708 23 1 1.5899 1.9163 -0.8524 24 1 1.7044 1.8723 0.9234 25 1 1.5611 -0.3873 2.0628 26 1 3.0797 -0.6611 1.1756 27 1 2.0657 -2.6214 0.0450 28 1 0.5471 -2.3475 0.9322 29 1 0.3744 -3.9939 2.8442 30 1 3.4487 -6.1261 6.4837 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261034373.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:04 Heat of formation + Delta-G solvation = 71.982607 kcal Electronic energy + Delta-G solvation = -13554.283033 eV Core-core repulsion = 11192.862642 eV Total energy + Delta-G solvation = -2361.420390 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.03699 -38.68064 -35.72402 -34.23941 -31.80692 -30.40114 -28.50949 -27.90683 -25.10365 -22.76281 -22.43252 -21.33922 -19.17946 -17.54174 -16.96834 -16.72786 -16.30812 -15.75397 -15.50674 -15.03606 -14.61678 -14.40339 -13.41413 -13.10908 -13.09216 -12.82153 -12.73084 -12.55658 -12.45245 -12.24174 -11.83927 -11.59358 -11.20090 -10.40479 -10.17190 -9.69796 -9.44902 -8.32941 -6.36962 1.33248 1.43947 1.60778 1.62978 2.12693 2.34966 2.52652 3.08816 3.60620 3.68124 3.96551 4.06007 4.18772 4.31278 4.42077 4.52023 4.65764 4.71835 4.83340 4.96204 4.97797 5.02738 5.30687 5.47861 5.86976 6.01298 6.25798 6.47874 6.63081 7.02289 7.11274 8.36668 8.66567 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.063760 B = 0.006563 C = 0.006102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.041569 B = 4265.638666 C = 4587.342267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.552 5.552 3 C 0.024 3.976 4 C 0.061 3.939 5 C 0.139 3.861 6 N -0.340 5.340 7 C 0.147 3.853 8 N -0.531 5.531 9 C 0.299 3.701 10 C -0.487 4.487 11 H 0.074 0.926 12 C 0.034 3.966 13 N -0.807 5.807 14 Si 0.994 3.006 15 H -0.261 1.261 16 H -0.265 1.265 17 H -0.265 1.265 18 N -0.457 5.457 19 H 0.026 0.974 20 H 0.089 0.911 21 H 0.080 0.920 22 H 0.063 0.937 23 H 0.092 0.908 24 H 0.024 0.976 25 H 0.024 0.976 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.125 0.875 29 H 0.235 0.765 30 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.694 8.706 -8.390 13.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.276 5.276 3 C -0.123 4.123 4 C -0.068 4.068 5 C 0.017 3.983 6 N -0.135 5.135 7 C -0.150 4.150 8 N -0.258 5.258 9 C 0.038 3.962 10 C -0.529 4.529 11 H 0.092 0.908 12 C -0.184 4.184 13 N -0.435 5.435 14 Si 0.814 3.186 15 H -0.184 1.184 16 H -0.190 1.190 17 H -0.190 1.190 18 N -0.296 5.296 19 H 0.044 0.956 20 H 0.107 0.893 21 H 0.098 0.902 22 H 0.082 0.918 23 H 0.111 0.889 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.079 0.921 27 H 0.103 0.897 28 H 0.142 0.858 29 H 0.251 0.749 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.271 8.509 -8.782 13.742 hybrid contribution 0.057 0.208 1.114 1.135 sum -6.215 8.717 -7.667 13.168 Atomic orbital electron populations 1.22606 0.85769 1.03479 1.01420 1.61956 1.09544 1.14749 1.41380 1.22436 1.00877 0.87710 1.01326 1.22071 1.00248 0.92840 0.91659 1.21726 1.00393 0.90093 0.86089 1.47031 1.05092 1.35959 1.25403 1.27144 1.01478 0.95365 0.90986 1.71804 1.01724 1.27331 1.24987 1.21296 0.93070 0.91233 0.90649 1.18526 0.92396 1.28793 1.13153 0.90769 1.26710 1.00971 0.93561 0.97114 1.70148 1.27703 1.22836 1.22847 0.85003 0.77199 0.78660 0.77692 1.18430 1.19010 1.18975 1.74511 1.01633 1.32032 1.21395 0.95556 0.89278 0.90177 0.91832 0.88924 0.95716 0.95725 0.92060 0.89690 0.85752 0.74888 0.91409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 9.32 127.69 1.19 1.45 16 2 N -0.55 -12.91 5.02 -948.85 -4.76 -17.68 16 3 C 0.02 0.49 9.57 127.69 1.22 1.71 16 4 C 0.06 1.85 5.08 86.30 0.44 2.29 16 5 C 0.14 4.30 6.37 86.38 0.55 4.85 16 6 N -0.34 -15.09 3.43 -351.77 -1.20 -16.30 16 7 C 0.15 6.68 12.56 180.25 2.26 8.94 16 8 N -0.53 -30.95 9.61 -197.53 -1.90 -32.85 16 9 C 0.30 18.37 7.62 134.85 1.03 19.40 16 10 C -0.49 -29.97 9.50 23.44 0.22 -29.75 16 11 H 0.07 4.46 7.84 -2.91 -0.02 4.44 16 12 C 0.03 1.90 5.49 85.23 0.47 2.37 16 13 N -0.81 -47.55 11.93 21.81 0.26 -47.29 16 14 Si 0.99 42.44 29.56 68.60 2.03 44.47 16 15 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 16 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 17 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 18 N -0.46 -25.27 11.90 -56.21 -0.67 -25.94 16 19 H 0.03 0.46 8.14 -2.39 -0.02 0.45 16 20 H 0.09 1.20 8.12 -2.39 -0.02 1.18 16 21 H 0.08 1.23 6.47 -2.39 -0.02 1.22 16 22 H 0.06 1.35 8.12 -2.39 -0.02 1.33 16 23 H 0.09 1.40 8.12 -2.39 -0.02 1.38 16 24 H 0.02 0.49 8.14 -2.38 -0.02 0.47 16 25 H 0.02 0.80 8.12 -2.39 -0.02 0.78 16 26 H 0.06 2.22 8.03 -2.39 -0.02 2.20 16 27 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 28 H 0.12 2.81 6.47 -2.39 -0.02 2.80 16 29 H 0.24 7.66 8.06 -2.91 -0.02 7.64 16 30 H 0.28 14.66 8.30 -92.70 -0.77 13.89 16 Total: -1.00 -76.38 260.36 2.26 -74.12 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 1.12 Total: 10.20 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 7.38 Total: 11.26 kcal Atomic # 7 Polarization: -131.78 SS G_CDS: -8.27 Total: -140.06 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -76.38 2.26 -74.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261034373.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.107 kcal (2) G-P(sol) polarization free energy of solvation -76.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds