Wall clock time and date at job start Mon Mar 30 2020 02:30:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 N 1.46503 * 109.46705 * 2 1
4 4 C 1.46501 * 120.00110 * 270.00087 * 3 2 1
5 5 C 1.52999 * 109.47354 * 270.00307 * 4 3 2
6 6 C 1.39236 * 120.00120 * 90.00260 * 3 2 1
7 7 C 1.40463 * 125.79726 * 5.28272 * 6 3 2
8 8 C 1.39121 * 107.52773 * 180.16299 * 7 6 3
9 9 C 1.40014 * 126.34976 * 179.84615 * 8 7 6
10 10 H 1.08002 * 119.99697 * 359.70445 * 9 8 7
11 11 C 1.40378 * 119.99942 * 179.97438 * 9 8 7
12 12 N 1.30604 * 120.00403 * 359.71918 * 11 9 8
13 13 Si 1.86796 * 120.00193 * 179.72114 * 11 9 8
14 14 H 1.48502 * 109.47374 * 59.99605 * 13 11 9
15 15 H 1.48497 * 109.47531 * 179.97438 * 13 11 9
16 16 H 1.48504 * 109.47384 * 299.99989 * 13 11 9
17 17 O 1.35140 * 107.30139 * 359.57607 * 8 7 6
18 18 N 1.31120 * 125.80447 * 184.97219 * 6 3 2
19 19 H 1.08994 * 109.47406 * 60.00209 * 1 2 3
20 20 H 1.08997 * 109.46530 * 180.02562 * 1 2 3
21 21 H 1.09001 * 109.46756 * 299.99260 * 1 2 3
22 22 H 1.09001 * 109.46756 * 240.00740 * 2 1 3
23 23 H 1.08994 * 109.47406 * 119.99791 * 2 1 3
24 24 H 1.08997 * 109.46899 * 30.00234 * 4 3 2
25 25 H 1.08995 * 109.47039 * 150.00203 * 4 3 2
26 26 H 1.09003 * 109.46884 * 59.99724 * 5 4 3
27 27 H 1.08993 * 109.47142 * 179.97438 * 5 4 3
28 28 H 1.08995 * 109.46981 * 300.00376 * 5 4 3
29 29 H 1.07994 * 126.23747 * 0.03469 * 7 6 3
30 30 H 0.96995 * 120.00313 * 180.02562 * 12 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.2624 2.0719 -1.2687
5 6 3.7074 1.8316 -1.7105
6 6 2.2504 2.0377 1.2058
7 6 2.1588 1.4637 2.4846
8 6 2.4628 2.4555 3.4117
9 6 2.4863 2.3107 4.8041
10 1 2.2485 1.3571 5.2519
11 6 2.8135 3.4065 5.6182
12 7 3.1013 4.5596 5.0767
13 14 2.8373 3.2155 7.4763
14 1 3.8304 2.1783 7.8546
15 1 3.2106 4.5093 8.1022
16 1 1.4902 2.8067 7.9492
17 8 2.7371 3.5829 2.7188
18 7 2.5971 3.2950 1.3404
19 1 -0.3634 0.5138 -0.8899
20 1 -0.3632 -1.0277 0.0005
21 1 -0.3633 0.5137 0.8901
22 1 1.8933 -0.5137 -0.8901
23 1 1.8934 -0.5138 0.8899
24 1 1.5816 1.6878 -2.0283
25 1 2.0954 3.1411 -1.1383
26 1 3.8744 0.7624 -1.8408
27 1 3.8888 2.3451 -2.6546
28 1 4.3882 2.2157 -0.9509
29 1 1.8978 0.4398 2.7075
30 1 3.3277 5.3166 5.6392
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261092083.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:30:08
Heat of formation + Delta-G solvation = 28.460683 kcal
Electronic energy + Delta-G solvation = -13832.005350 eV
Core-core repulsion = 11436.404956 eV
Total energy + Delta-G solvation = -2395.600394 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 210.111 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-39.29449 -36.75192 -33.77930 -31.74048 -31.05981 -29.34758 -27.69495 -25.47099
-23.11401 -22.08163 -20.04587 -18.58680 -17.44626 -15.39811 -15.32878 -14.84817
-13.93669 -13.77731 -13.40293 -13.27693 -12.88732 -12.63469 -12.19239 -11.79374
-11.60929 -11.45958 -11.37260 -11.14152 -10.78207 -10.59778 -10.45921 -10.15332
-9.89958 -9.41850 -9.06627 -7.48391 -6.97089 -6.95789 -4.80307 2.84897
2.97999 3.01457 3.47626 3.64067 3.78081 4.25755 5.17395 5.20229
5.41915 5.44857 5.56699 5.72178 5.82623 5.83792 5.95536 6.10765
6.19605 6.32917 6.54182 6.59362 6.69683 6.89412 7.03942 7.38149
7.51230 7.76588 8.16071 8.44676 8.54862 8.70075 9.58815 10.00222
Molecular weight = 210.11amu
Principal moments of inertia in cm(-1)
A = 0.050448 B = 0.008016 C = 0.007244
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 554.897380 B = 3492.155726 C = 3864.172042
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.138 3.862
3 N -0.608 5.608
4 C 0.133 3.867
5 C -0.167 4.167
6 C 0.367 3.633
7 C -0.494 4.494
8 C 0.248 3.752
9 C -0.434 4.434
10 H 0.103 0.897
11 C 0.069 3.931
12 N -0.754 5.754
13 Si 0.927 3.073
14 H -0.260 1.260
15 H -0.274 1.274
16 H -0.260 1.260
17 O -0.081 6.081
18 N -0.482 5.482
19 H 0.049 0.951
20 H 0.056 0.944
21 H 0.061 0.939
22 H 0.062 0.938
23 H 0.073 0.927
24 H 0.060 0.940
25 H 0.074 0.926
26 H 0.048 0.952
27 H 0.055 0.945
28 H 0.059 0.941
29 H 0.111 0.889
30 H 0.290 0.710
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.871 -6.010 -4.859 7.952
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C 0.014 3.986
3 N -0.332 5.332
4 C 0.009 3.991
5 C -0.226 4.226
6 C 0.115 3.885
7 C -0.524 4.524
8 C 0.187 3.813
9 C -0.465 4.465
10 H 0.121 0.879
11 C -0.156 4.156
12 N -0.378 5.378
13 Si 0.750 3.250
14 H -0.184 1.184
15 H -0.199 1.199
16 H -0.184 1.184
17 O -0.083 6.083
18 N -0.252 5.252
19 H 0.068 0.932
20 H 0.075 0.925
21 H 0.080 0.920
22 H 0.081 0.919
23 H 0.092 0.908
24 H 0.078 0.922
25 H 0.092 0.908
26 H 0.067 0.933
27 H 0.074 0.926
28 H 0.078 0.922
29 H 0.129 0.871
30 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges -1.528 -4.644 -5.466 7.333
hybrid contribution -0.204 -0.893 1.130 1.455
sum -1.733 -5.537 -4.336 7.243
Atomic orbital electron populations
1.22239 0.97295 1.01001 1.02353 1.21142 0.93299 0.82421 1.01725
1.45446 1.73899 1.12509 1.01351 1.21146 0.95110 0.97931 0.84924
1.22194 0.98551 1.00987 1.00852 1.19629 0.91225 0.91599 0.86075
1.21289 1.40978 1.01297 0.88812 1.19914 0.84827 0.84232 0.92293
1.18965 1.41494 0.98232 0.87788 0.87908 1.26295 0.92192 0.94329
1.02804 1.69704 1.27683 1.01211 1.39162 0.86046 0.80160 0.78876
0.79899 1.18447 1.19886 1.18444 1.89354 1.76528 1.29761 1.12649
1.80162 1.41206 1.12659 0.91212 0.93197 0.92536 0.91982 0.91937
0.90815 0.92186 0.90768 0.93276 0.92620 0.92159 0.87063 0.89861
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.47 10.24 37.16 0.38 -2.09 16
2 C 0.14 2.23 6.19 -4.04 -0.02 2.20 16
3 N -0.61 -12.18 2.59 -173.68 -0.45 -12.64 16
4 C 0.13 2.27 6.30 -4.04 -0.03 2.25 16
5 C -0.17 -2.59 10.24 37.16 0.38 -2.21 16
6 C 0.37 9.37 7.57 -155.36 -1.18 8.20 16
7 C -0.49 -13.17 9.98 -38.42 -0.38 -13.55 16
8 C 0.25 7.20 6.87 -38.59 -0.27 6.93 16
9 C -0.43 -11.70 9.35 -38.11 -0.36 -12.06 16
10 H 0.10 2.54 7.85 -52.49 -0.41 2.12 16
11 C 0.07 1.73 5.50 -17.27 -0.10 1.63 16
12 N -0.75 -20.24 12.02 55.57 0.67 -19.57 16
13 Si 0.93 18.11 29.56 -169.99 -5.03 13.09 16
14 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16
15 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16
16 H -0.26 -4.96 7.11 56.52 0.40 -4.55 16
17 O -0.08 -2.50 10.48 6.68 0.07 -2.43 16
18 N -0.48 -13.74 12.23 31.24 0.38 -13.36 16
19 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16
20 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
21 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16
22 H 0.06 0.83 8.07 -51.93 -0.42 0.41 16
23 H 0.07 1.25 6.72 -51.93 -0.35 0.90 16
24 H 0.06 0.84 8.07 -51.93 -0.42 0.42 16
25 H 0.07 1.42 7.62 -51.93 -0.40 1.03 16
26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16
28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
29 H 0.11 2.74 7.19 -52.49 -0.38 2.36 16
30 H 0.29 6.93 8.29 -40.82 -0.34 6.59 16
LS Contribution 263.09 15.07 3.96 3.96
Total: -1.00 -31.30 263.09 -6.00 -37.30
By element:
Atomic # 1 Polarization: 6.38 SS G_CDS: -4.04 Total: 2.34 kcal
Atomic # 6 Polarization: -7.13 SS G_CDS: -1.57 Total: -8.70 kcal
Atomic # 7 Polarization: -46.16 SS G_CDS: 0.60 Total: -45.56 kcal
Atomic # 8 Polarization: -2.50 SS G_CDS: 0.07 Total: -2.43 kcal
Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.09 kcal
Total LS contribution 3.96 Total: 3.96 kcal
Total: -31.30 -6.00 -37.30 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261092083.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.764 kcal
(2) G-P(sol) polarization free energy of solvation -31.304 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.460 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.999 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.303 kcal
(6) G-S(sol) free energy of system = (1) + (5) 28.461 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds