Wall clock time and date at job start Mon Mar 30 2020 02:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46503 * 109.46705 * 2 1 4 4 C 1.46501 * 120.00110 * 270.00087 * 3 2 1 5 5 C 1.52999 * 109.47354 * 270.00307 * 4 3 2 6 6 C 1.39236 * 120.00120 * 90.00260 * 3 2 1 7 7 C 1.40463 * 125.79726 * 5.28272 * 6 3 2 8 8 C 1.39121 * 107.52773 * 180.16299 * 7 6 3 9 9 C 1.40014 * 126.34976 * 179.84615 * 8 7 6 10 10 H 1.08002 * 119.99697 * 359.70445 * 9 8 7 11 11 C 1.40378 * 119.99942 * 179.97438 * 9 8 7 12 12 N 1.30604 * 120.00403 * 359.71918 * 11 9 8 13 13 Si 1.86796 * 120.00193 * 179.72114 * 11 9 8 14 14 H 1.48502 * 109.47374 * 59.99605 * 13 11 9 15 15 H 1.48497 * 109.47531 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47384 * 299.99989 * 13 11 9 17 17 O 1.35140 * 107.30139 * 359.57607 * 8 7 6 18 18 N 1.31120 * 125.80447 * 184.97219 * 6 3 2 19 19 H 1.08994 * 109.47406 * 60.00209 * 1 2 3 20 20 H 1.08997 * 109.46530 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46756 * 299.99260 * 1 2 3 22 22 H 1.09001 * 109.46756 * 240.00740 * 2 1 3 23 23 H 1.08994 * 109.47406 * 119.99791 * 2 1 3 24 24 H 1.08997 * 109.46899 * 30.00234 * 4 3 2 25 25 H 1.08995 * 109.47039 * 150.00203 * 4 3 2 26 26 H 1.09003 * 109.46884 * 59.99724 * 5 4 3 27 27 H 1.08993 * 109.47142 * 179.97438 * 5 4 3 28 28 H 1.08995 * 109.46981 * 300.00376 * 5 4 3 29 29 H 1.07994 * 126.23747 * 0.03469 * 7 6 3 30 30 H 0.96995 * 120.00313 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.7074 1.8316 -1.7105 6 6 2.2504 2.0377 1.2058 7 6 2.1588 1.4637 2.4846 8 6 2.4628 2.4555 3.4117 9 6 2.4863 2.3107 4.8041 10 1 2.2485 1.3571 5.2519 11 6 2.8135 3.4065 5.6182 12 7 3.1013 4.5596 5.0767 13 14 2.8373 3.2155 7.4763 14 1 3.8304 2.1783 7.8546 15 1 3.2106 4.5093 8.1022 16 1 1.4902 2.8067 7.9492 17 8 2.7371 3.5829 2.7188 18 7 2.5971 3.2950 1.3404 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5137 0.8901 22 1 1.8933 -0.5137 -0.8901 23 1 1.8934 -0.5138 0.8899 24 1 1.5816 1.6878 -2.0283 25 1 2.0954 3.1411 -1.1383 26 1 3.8744 0.7624 -1.8408 27 1 3.8888 2.3451 -2.6546 28 1 4.3882 2.2157 -0.9509 29 1 1.8978 0.4398 2.7075 30 1 3.3277 5.3166 5.6392 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261092083.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:08 Heat of formation + Delta-G solvation = 28.460683 kcal Electronic energy + Delta-G solvation = -13832.005350 eV Core-core repulsion = 11436.404956 eV Total energy + Delta-G solvation = -2395.600394 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.29449 -36.75192 -33.77930 -31.74048 -31.05981 -29.34758 -27.69495 -25.47099 -23.11401 -22.08163 -20.04587 -18.58680 -17.44626 -15.39811 -15.32878 -14.84817 -13.93669 -13.77731 -13.40293 -13.27693 -12.88732 -12.63469 -12.19239 -11.79374 -11.60929 -11.45958 -11.37260 -11.14152 -10.78207 -10.59778 -10.45921 -10.15332 -9.89958 -9.41850 -9.06627 -7.48391 -6.97089 -6.95789 -4.80307 2.84897 2.97999 3.01457 3.47626 3.64067 3.78081 4.25755 5.17395 5.20229 5.41915 5.44857 5.56699 5.72178 5.82623 5.83792 5.95536 6.10765 6.19605 6.32917 6.54182 6.59362 6.69683 6.89412 7.03942 7.38149 7.51230 7.76588 8.16071 8.44676 8.54862 8.70075 9.58815 10.00222 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.050448 B = 0.008016 C = 0.007244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.897380 B = 3492.155726 C = 3864.172042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.138 3.862 3 N -0.608 5.608 4 C 0.133 3.867 5 C -0.167 4.167 6 C 0.367 3.633 7 C -0.494 4.494 8 C 0.248 3.752 9 C -0.434 4.434 10 H 0.103 0.897 11 C 0.069 3.931 12 N -0.754 5.754 13 Si 0.927 3.073 14 H -0.260 1.260 15 H -0.274 1.274 16 H -0.260 1.260 17 O -0.081 6.081 18 N -0.482 5.482 19 H 0.049 0.951 20 H 0.056 0.944 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.073 0.927 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.111 0.889 30 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.871 -6.010 -4.859 7.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.014 3.986 3 N -0.332 5.332 4 C 0.009 3.991 5 C -0.226 4.226 6 C 0.115 3.885 7 C -0.524 4.524 8 C 0.187 3.813 9 C -0.465 4.465 10 H 0.121 0.879 11 C -0.156 4.156 12 N -0.378 5.378 13 Si 0.750 3.250 14 H -0.184 1.184 15 H -0.199 1.199 16 H -0.184 1.184 17 O -0.083 6.083 18 N -0.252 5.252 19 H 0.068 0.932 20 H 0.075 0.925 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.092 0.908 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.129 0.871 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.528 -4.644 -5.466 7.333 hybrid contribution -0.204 -0.893 1.130 1.455 sum -1.733 -5.537 -4.336 7.243 Atomic orbital electron populations 1.22239 0.97295 1.01001 1.02353 1.21142 0.93299 0.82421 1.01725 1.45446 1.73899 1.12509 1.01351 1.21146 0.95110 0.97931 0.84924 1.22194 0.98551 1.00987 1.00852 1.19629 0.91225 0.91599 0.86075 1.21289 1.40978 1.01297 0.88812 1.19914 0.84827 0.84232 0.92293 1.18965 1.41494 0.98232 0.87788 0.87908 1.26295 0.92192 0.94329 1.02804 1.69704 1.27683 1.01211 1.39162 0.86046 0.80160 0.78876 0.79899 1.18447 1.19886 1.18444 1.89354 1.76528 1.29761 1.12649 1.80162 1.41206 1.12659 0.91212 0.93197 0.92536 0.91982 0.91937 0.90815 0.92186 0.90768 0.93276 0.92620 0.92159 0.87063 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 10.24 37.16 0.38 -2.09 16 2 C 0.14 2.23 6.19 -4.04 -0.02 2.20 16 3 N -0.61 -12.18 2.59 -173.68 -0.45 -12.64 16 4 C 0.13 2.27 6.30 -4.04 -0.03 2.25 16 5 C -0.17 -2.59 10.24 37.16 0.38 -2.21 16 6 C 0.37 9.37 7.57 -155.36 -1.18 8.20 16 7 C -0.49 -13.17 9.98 -38.42 -0.38 -13.55 16 8 C 0.25 7.20 6.87 -38.59 -0.27 6.93 16 9 C -0.43 -11.70 9.35 -38.11 -0.36 -12.06 16 10 H 0.10 2.54 7.85 -52.49 -0.41 2.12 16 11 C 0.07 1.73 5.50 -17.27 -0.10 1.63 16 12 N -0.75 -20.24 12.02 55.57 0.67 -19.57 16 13 Si 0.93 18.11 29.56 -169.99 -5.03 13.09 16 14 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 15 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 16 H -0.26 -4.96 7.11 56.52 0.40 -4.55 16 17 O -0.08 -2.50 10.48 6.68 0.07 -2.43 16 18 N -0.48 -13.74 12.23 31.24 0.38 -13.36 16 19 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 20 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 22 H 0.06 0.83 8.07 -51.93 -0.42 0.41 16 23 H 0.07 1.25 6.72 -51.93 -0.35 0.90 16 24 H 0.06 0.84 8.07 -51.93 -0.42 0.42 16 25 H 0.07 1.42 7.62 -51.93 -0.40 1.03 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.11 2.74 7.19 -52.49 -0.38 2.36 16 30 H 0.29 6.93 8.29 -40.82 -0.34 6.59 16 LS Contribution 263.09 15.07 3.96 3.96 Total: -1.00 -31.30 263.09 -6.00 -37.30 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -4.04 Total: 2.34 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -1.57 Total: -8.70 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.60 Total: -45.56 kcal Atomic # 8 Polarization: -2.50 SS G_CDS: 0.07 Total: -2.43 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.30 -6.00 -37.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261092083.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.764 kcal (2) G-P(sol) polarization free energy of solvation -31.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds