Wall clock time and date at job start Mon Mar 30 2020 02:30:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 N 1.46503 * 109.46705 * 2 1
4 4 C 1.46501 * 120.00110 * 270.00087 * 3 2 1
5 5 C 1.52999 * 109.47354 * 270.00307 * 4 3 2
6 6 C 1.39236 * 120.00120 * 90.00260 * 3 2 1
7 7 C 1.40463 * 125.79726 * 5.28272 * 6 3 2
8 8 C 1.39121 * 107.52773 * 180.16299 * 7 6 3
9 9 C 1.40014 * 126.34976 * 179.84615 * 8 7 6
10 10 H 1.08002 * 119.99697 * 359.70445 * 9 8 7
11 11 C 1.40378 * 119.99942 * 179.97438 * 9 8 7
12 12 N 1.30604 * 120.00403 * 359.71918 * 11 9 8
13 13 Si 1.86796 * 120.00193 * 179.72114 * 11 9 8
14 14 H 1.48502 * 109.47374 * 59.99605 * 13 11 9
15 15 H 1.48497 * 109.47531 * 179.97438 * 13 11 9
16 16 H 1.48504 * 109.47384 * 299.99989 * 13 11 9
17 17 O 1.35140 * 107.30139 * 359.57607 * 8 7 6
18 18 N 1.31120 * 125.80447 * 184.97219 * 6 3 2
19 19 H 1.08994 * 109.47406 * 60.00209 * 1 2 3
20 20 H 1.08997 * 109.46530 * 180.02562 * 1 2 3
21 21 H 1.09001 * 109.46756 * 299.99260 * 1 2 3
22 22 H 1.09001 * 109.46756 * 240.00740 * 2 1 3
23 23 H 1.08994 * 109.47406 * 119.99791 * 2 1 3
24 24 H 1.08997 * 109.46899 * 30.00234 * 4 3 2
25 25 H 1.08995 * 109.47039 * 150.00203 * 4 3 2
26 26 H 1.09003 * 109.46884 * 59.99724 * 5 4 3
27 27 H 1.08993 * 109.47142 * 179.97438 * 5 4 3
28 28 H 1.08995 * 109.46981 * 300.00376 * 5 4 3
29 29 H 1.07994 * 126.23747 * 0.03469 * 7 6 3
30 30 H 0.96995 * 120.00313 * 180.02562 * 12 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.2624 2.0719 -1.2687
5 6 3.7074 1.8316 -1.7105
6 6 2.2504 2.0377 1.2058
7 6 2.1588 1.4637 2.4846
8 6 2.4628 2.4555 3.4117
9 6 2.4863 2.3107 4.8041
10 1 2.2485 1.3571 5.2519
11 6 2.8135 3.4065 5.6182
12 7 3.1013 4.5596 5.0767
13 14 2.8373 3.2155 7.4763
14 1 3.8304 2.1783 7.8546
15 1 3.2106 4.5093 8.1022
16 1 1.4902 2.8067 7.9492
17 8 2.7371 3.5829 2.7188
18 7 2.5971 3.2950 1.3404
19 1 -0.3634 0.5138 -0.8899
20 1 -0.3632 -1.0277 0.0005
21 1 -0.3633 0.5137 0.8901
22 1 1.8933 -0.5137 -0.8901
23 1 1.8934 -0.5138 0.8899
24 1 1.5816 1.6878 -2.0283
25 1 2.0954 3.1411 -1.1383
26 1 3.8744 0.7624 -1.8408
27 1 3.8888 2.3451 -2.6546
28 1 4.3882 2.2157 -0.9509
29 1 1.8978 0.4398 2.7075
30 1 3.3277 5.3166 5.6392
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261092083.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:30:08
Heat of formation + Delta-G solvation = 8.995346 kcal
Electronic energy + Delta-G solvation = -13832.849430 eV
Core-core repulsion = 11436.404956 eV
Total energy + Delta-G solvation = -2396.444474 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 210.111 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-41.32789 -38.34655 -35.75418 -33.04948 -32.95889 -31.40819 -29.21521 -27.49428
-24.48964 -23.62829 -22.01703 -20.46716 -19.27289 -17.27467 -16.93086 -16.44615
-15.83425 -15.58363 -14.97442 -14.87745 -14.39586 -14.16369 -13.81645 -13.31766
-13.10599 -13.00369 -12.87476 -12.64973 -12.50444 -11.97196 -11.89857 -11.81724
-11.69977 -11.27332 -11.10479 -9.61363 -8.89014 -8.70151 -6.89629 1.08381
1.37269 1.55519 1.67047 2.02466 2.13535 2.30258 3.13282 3.30724
4.03577 4.13309 4.30133 4.49699 4.52958 4.59138 4.63889 4.76288
4.88528 4.94804 4.97697 5.09569 5.20456 5.29909 5.31690 5.39827
5.57621 5.95150 6.27421 6.45147 6.62466 6.80274 7.51679 8.11488
Molecular weight = 210.11amu
Principal moments of inertia in cm(-1)
A = 0.050448 B = 0.008016 C = 0.007244
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 554.897380 B = 3492.155726 C = 3864.172042
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.129 3.871
3 N -0.604 5.604
4 C 0.125 3.875
5 C -0.158 4.158
6 C 0.372 3.628
7 C -0.510 4.510
8 C 0.210 3.790
9 C -0.455 4.455
10 H 0.120 0.880
11 C 0.021 3.979
12 N -0.795 5.795
13 Si 1.016 2.984
14 H -0.248 1.248
15 H -0.263 1.263
16 H -0.248 1.248
17 O -0.123 6.123
18 N -0.514 5.514
19 H 0.060 0.940
20 H 0.089 0.911
21 H 0.027 0.973
22 H 0.104 0.896
23 H 0.061 0.939
24 H 0.104 0.896
25 H 0.046 0.954
26 H 0.068 0.932
27 H 0.084 0.916
28 H 0.020 0.980
29 H 0.125 0.875
30 H 0.301 0.699
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.310 -7.727 -4.890 9.431
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.007 3.993
3 N -0.328 5.328
4 C 0.003 3.997
5 C -0.216 4.216
6 C 0.118 3.882
7 C -0.539 4.539
8 C 0.150 3.850
9 C -0.485 4.485
10 H 0.138 0.862
11 C -0.200 4.200
12 N -0.420 5.420
13 Si 0.832 3.168
14 H -0.172 1.172
15 H -0.187 1.187
16 H -0.172 1.172
17 O -0.123 6.123
18 N -0.290 5.290
19 H 0.079 0.921
20 H 0.108 0.892
21 H 0.046 0.954
22 H 0.122 0.878
23 H 0.079 0.921
24 H 0.122 0.878
25 H 0.064 0.936
26 H 0.087 0.913
27 H 0.103 0.897
28 H 0.039 0.961
29 H 0.143 0.857
30 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -1.979 -6.394 -5.526 8.680
hybrid contribution -0.085 -0.395 1.024 1.101
sum -2.064 -6.789 -4.502 8.403
Atomic orbital electron populations
1.22161 0.95918 1.02798 1.01164 1.21489 0.94387 0.80298 1.03146
1.45946 1.72821 1.13743 1.00334 1.21398 0.97284 0.96529 0.84518
1.22110 0.96263 1.02413 1.00862 1.19913 0.89445 0.90812 0.88001
1.21484 1.41648 1.01603 0.89163 1.20609 0.86027 0.84588 0.93750
1.19550 1.41505 0.99836 0.87613 0.86207 1.27542 0.90541 0.93076
1.08863 1.69800 1.27705 1.02504 1.41972 0.84762 0.80859 0.79510
0.71643 1.17193 1.18706 1.17196 1.89273 1.77785 1.31207 1.14034
1.80059 1.44106 1.14697 0.90136 0.92069 0.89243 0.95420 0.87795
0.92060 0.87826 0.93563 0.91314 0.89675 0.96101 0.85666 0.88764
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.31 10.24 71.98 0.74 -3.57 16
2 C 0.13 3.85 6.19 86.38 0.53 4.38 16
3 N -0.60 -23.74 2.59 -703.40 -1.83 -25.56 16
4 C 0.13 4.09 6.30 86.38 0.54 4.64 16
5 C -0.16 -4.61 10.24 71.98 0.74 -3.87 16
6 C 0.37 19.48 7.57 133.69 1.01 20.49 16
7 C -0.51 -28.00 9.98 23.02 0.23 -27.77 16
8 C 0.21 12.68 6.87 22.91 0.16 12.84 16
9 C -0.46 -25.06 9.35 23.22 0.22 -24.85 16
10 H 0.12 5.93 7.85 -2.91 -0.02 5.91 16
11 C 0.02 1.04 5.50 85.40 0.47 1.51 16
12 N -0.80 -43.81 12.02 21.90 0.26 -43.55 16
13 Si 1.02 36.32 29.56 68.60 2.03 38.35 16
14 H -0.25 -8.38 7.11 99.48 0.71 -7.67 16
15 H -0.26 -8.85 7.11 99.48 0.71 -8.15 16
16 H -0.25 -8.38 7.11 99.48 0.71 -7.67 16
17 O -0.12 -8.04 10.48 26.22 0.27 -7.76 16
18 N -0.51 -30.66 12.23 -55.06 -0.67 -31.33 16
19 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16
20 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16
21 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16
22 H 0.10 2.29 8.07 -2.39 -0.02 2.27 16
23 H 0.06 1.99 6.72 -2.39 -0.02 1.97 16
24 H 0.10 2.51 8.07 -2.39 -0.02 2.49 16
25 H 0.05 1.77 7.62 -2.39 -0.02 1.75 16
26 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16
27 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16
28 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16
29 H 0.13 6.28 7.19 -2.91 -0.02 6.26 16
30 H 0.30 14.61 8.29 -92.71 -0.77 13.84 16
Total: -1.00 -72.35 263.09 5.82 -66.53
By element:
Atomic # 1 Polarization: 18.40 SS G_CDS: 1.12 Total: 19.52 kcal
Atomic # 6 Polarization: -20.84 SS G_CDS: 4.64 Total: -16.20 kcal
Atomic # 7 Polarization: -98.21 SS G_CDS: -2.24 Total: -100.44 kcal
Atomic # 8 Polarization: -8.04 SS G_CDS: 0.27 Total: -7.76 kcal
Atomic # 14 Polarization: 36.32 SS G_CDS: 2.03 Total: 38.35 kcal
Total: -72.35 5.82 -66.53 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261092083.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.526 kcal
(2) G-P(sol) polarization free energy of solvation -72.355 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.171 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.824 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.531 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.995 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds