Wall clock time and date at job start Mon Mar 30 2020 02:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46503 * 109.46705 * 2 1 4 4 C 1.46501 * 120.00110 * 270.00087 * 3 2 1 5 5 C 1.52999 * 109.47354 * 270.00307 * 4 3 2 6 6 C 1.39236 * 120.00120 * 90.00260 * 3 2 1 7 7 C 1.40463 * 125.79726 * 5.28272 * 6 3 2 8 8 C 1.39121 * 107.52773 * 180.16299 * 7 6 3 9 9 C 1.40014 * 126.34976 * 179.84615 * 8 7 6 10 10 H 1.08002 * 119.99697 * 359.70445 * 9 8 7 11 11 C 1.40378 * 119.99942 * 179.97438 * 9 8 7 12 12 N 1.30604 * 120.00403 * 359.71918 * 11 9 8 13 13 Si 1.86796 * 120.00193 * 179.72114 * 11 9 8 14 14 H 1.48502 * 109.47374 * 59.99605 * 13 11 9 15 15 H 1.48497 * 109.47531 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47384 * 299.99989 * 13 11 9 17 17 O 1.35140 * 107.30139 * 359.57607 * 8 7 6 18 18 N 1.31120 * 125.80447 * 184.97219 * 6 3 2 19 19 H 1.08994 * 109.47406 * 60.00209 * 1 2 3 20 20 H 1.08997 * 109.46530 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46756 * 299.99260 * 1 2 3 22 22 H 1.09001 * 109.46756 * 240.00740 * 2 1 3 23 23 H 1.08994 * 109.47406 * 119.99791 * 2 1 3 24 24 H 1.08997 * 109.46899 * 30.00234 * 4 3 2 25 25 H 1.08995 * 109.47039 * 150.00203 * 4 3 2 26 26 H 1.09003 * 109.46884 * 59.99724 * 5 4 3 27 27 H 1.08993 * 109.47142 * 179.97438 * 5 4 3 28 28 H 1.08995 * 109.46981 * 300.00376 * 5 4 3 29 29 H 1.07994 * 126.23747 * 0.03469 * 7 6 3 30 30 H 0.96995 * 120.00313 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.7074 1.8316 -1.7105 6 6 2.2504 2.0377 1.2058 7 6 2.1588 1.4637 2.4846 8 6 2.4628 2.4555 3.4117 9 6 2.4863 2.3107 4.8041 10 1 2.2485 1.3571 5.2519 11 6 2.8135 3.4065 5.6182 12 7 3.1013 4.5596 5.0767 13 14 2.8373 3.2155 7.4763 14 1 3.8304 2.1783 7.8546 15 1 3.2106 4.5093 8.1022 16 1 1.4902 2.8067 7.9492 17 8 2.7371 3.5829 2.7188 18 7 2.5971 3.2950 1.3404 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5137 0.8901 22 1 1.8933 -0.5137 -0.8901 23 1 1.8934 -0.5138 0.8899 24 1 1.5816 1.6878 -2.0283 25 1 2.0954 3.1411 -1.1383 26 1 3.8744 0.7624 -1.8408 27 1 3.8888 2.3451 -2.6546 28 1 4.3882 2.2157 -0.9509 29 1 1.8978 0.4398 2.7075 30 1 3.3277 5.3166 5.6392 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261092083.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:08 Heat of formation + Delta-G solvation = 8.995346 kcal Electronic energy + Delta-G solvation = -13832.849430 eV Core-core repulsion = 11436.404956 eV Total energy + Delta-G solvation = -2396.444474 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.32789 -38.34655 -35.75418 -33.04948 -32.95889 -31.40819 -29.21521 -27.49428 -24.48964 -23.62829 -22.01703 -20.46716 -19.27289 -17.27467 -16.93086 -16.44615 -15.83425 -15.58363 -14.97442 -14.87745 -14.39586 -14.16369 -13.81645 -13.31766 -13.10599 -13.00369 -12.87476 -12.64973 -12.50444 -11.97196 -11.89857 -11.81724 -11.69977 -11.27332 -11.10479 -9.61363 -8.89014 -8.70151 -6.89629 1.08381 1.37269 1.55519 1.67047 2.02466 2.13535 2.30258 3.13282 3.30724 4.03577 4.13309 4.30133 4.49699 4.52958 4.59138 4.63889 4.76288 4.88528 4.94804 4.97697 5.09569 5.20456 5.29909 5.31690 5.39827 5.57621 5.95150 6.27421 6.45147 6.62466 6.80274 7.51679 8.11488 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.050448 B = 0.008016 C = 0.007244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.897380 B = 3492.155726 C = 3864.172042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.129 3.871 3 N -0.604 5.604 4 C 0.125 3.875 5 C -0.158 4.158 6 C 0.372 3.628 7 C -0.510 4.510 8 C 0.210 3.790 9 C -0.455 4.455 10 H 0.120 0.880 11 C 0.021 3.979 12 N -0.795 5.795 13 Si 1.016 2.984 14 H -0.248 1.248 15 H -0.263 1.263 16 H -0.248 1.248 17 O -0.123 6.123 18 N -0.514 5.514 19 H 0.060 0.940 20 H 0.089 0.911 21 H 0.027 0.973 22 H 0.104 0.896 23 H 0.061 0.939 24 H 0.104 0.896 25 H 0.046 0.954 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.020 0.980 29 H 0.125 0.875 30 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.310 -7.727 -4.890 9.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.007 3.993 3 N -0.328 5.328 4 C 0.003 3.997 5 C -0.216 4.216 6 C 0.118 3.882 7 C -0.539 4.539 8 C 0.150 3.850 9 C -0.485 4.485 10 H 0.138 0.862 11 C -0.200 4.200 12 N -0.420 5.420 13 Si 0.832 3.168 14 H -0.172 1.172 15 H -0.187 1.187 16 H -0.172 1.172 17 O -0.123 6.123 18 N -0.290 5.290 19 H 0.079 0.921 20 H 0.108 0.892 21 H 0.046 0.954 22 H 0.122 0.878 23 H 0.079 0.921 24 H 0.122 0.878 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.103 0.897 28 H 0.039 0.961 29 H 0.143 0.857 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.979 -6.394 -5.526 8.680 hybrid contribution -0.085 -0.395 1.024 1.101 sum -2.064 -6.789 -4.502 8.403 Atomic orbital electron populations 1.22161 0.95918 1.02798 1.01164 1.21489 0.94387 0.80298 1.03146 1.45946 1.72821 1.13743 1.00334 1.21398 0.97284 0.96529 0.84518 1.22110 0.96263 1.02413 1.00862 1.19913 0.89445 0.90812 0.88001 1.21484 1.41648 1.01603 0.89163 1.20609 0.86027 0.84588 0.93750 1.19550 1.41505 0.99836 0.87613 0.86207 1.27542 0.90541 0.93076 1.08863 1.69800 1.27705 1.02504 1.41972 0.84762 0.80859 0.79510 0.71643 1.17193 1.18706 1.17196 1.89273 1.77785 1.31207 1.14034 1.80059 1.44106 1.14697 0.90136 0.92069 0.89243 0.95420 0.87795 0.92060 0.87826 0.93563 0.91314 0.89675 0.96101 0.85666 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.31 10.24 71.98 0.74 -3.57 16 2 C 0.13 3.85 6.19 86.38 0.53 4.38 16 3 N -0.60 -23.74 2.59 -703.40 -1.83 -25.56 16 4 C 0.13 4.09 6.30 86.38 0.54 4.64 16 5 C -0.16 -4.61 10.24 71.98 0.74 -3.87 16 6 C 0.37 19.48 7.57 133.69 1.01 20.49 16 7 C -0.51 -28.00 9.98 23.02 0.23 -27.77 16 8 C 0.21 12.68 6.87 22.91 0.16 12.84 16 9 C -0.46 -25.06 9.35 23.22 0.22 -24.85 16 10 H 0.12 5.93 7.85 -2.91 -0.02 5.91 16 11 C 0.02 1.04 5.50 85.40 0.47 1.51 16 12 N -0.80 -43.81 12.02 21.90 0.26 -43.55 16 13 Si 1.02 36.32 29.56 68.60 2.03 38.35 16 14 H -0.25 -8.38 7.11 99.48 0.71 -7.67 16 15 H -0.26 -8.85 7.11 99.48 0.71 -8.15 16 16 H -0.25 -8.38 7.11 99.48 0.71 -7.67 16 17 O -0.12 -8.04 10.48 26.22 0.27 -7.76 16 18 N -0.51 -30.66 12.23 -55.06 -0.67 -31.33 16 19 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 20 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 21 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 22 H 0.10 2.29 8.07 -2.39 -0.02 2.27 16 23 H 0.06 1.99 6.72 -2.39 -0.02 1.97 16 24 H 0.10 2.51 8.07 -2.39 -0.02 2.49 16 25 H 0.05 1.77 7.62 -2.39 -0.02 1.75 16 26 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.13 6.28 7.19 -2.91 -0.02 6.26 16 30 H 0.30 14.61 8.29 -92.71 -0.77 13.84 16 Total: -1.00 -72.35 263.09 5.82 -66.53 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 1.12 Total: 19.52 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: 4.64 Total: -16.20 kcal Atomic # 7 Polarization: -98.21 SS G_CDS: -2.24 Total: -100.44 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.27 Total: -7.76 kcal Atomic # 14 Polarization: 36.32 SS G_CDS: 2.03 Total: 38.35 kcal Total: -72.35 5.82 -66.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261092083.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.526 kcal (2) G-P(sol) polarization free energy of solvation -72.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds