Wall clock time and date at job start Mon Mar 30 2020 02:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 6 6 N 1.32955 * 126.13037 * 239.69343 * 5 2 1 7 7 C 1.31729 * 110.01384 * 179.82094 * 6 5 2 8 8 O 1.35135 * 125.31774 * 180.21028 * 7 6 5 9 9 N 1.36057 * 109.36468 * 0.45034 * 7 6 5 10 10 H 0.96999 * 126.55826 * 179.77001 * 9 7 6 11 11 C 1.38807 * 106.86761 * 359.72592 * 9 7 6 12 12 C 1.39957 * 126.99198 * 180.02562 * 11 9 7 13 13 H 1.07999 * 119.99672 * 179.97438 * 12 11 9 14 14 C 1.39950 * 119.99904 * 359.97438 * 12 11 9 15 15 N 1.30966 * 119.99997 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00133 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47056 * 89.99605 * 16 14 12 18 18 H 1.48493 * 109.47467 * 209.99874 * 16 14 12 19 19 H 1.48503 * 109.46831 * 330.00300 * 16 14 12 20 20 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 24 24 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 26 26 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 27 27 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 28 28 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 29 29 H 0.96694 * 114.00649 * 270.27018 * 8 7 6 30 30 H 0.97000 * 119.99872 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7105 -1.2305 6 7 2.8046 -1.7926 -1.2506 7 6 3.0493 -2.1488 -2.4950 8 8 3.7981 -3.2089 -2.8713 9 7 2.4347 -1.2795 -3.3422 10 1 2.4534 -1.3068 -4.3116 11 6 1.7752 -0.3468 -2.5537 12 6 1.0081 0.7373 -2.9952 13 1 0.5415 1.3964 -2.2780 14 6 0.8456 0.9673 -4.3661 15 7 1.4117 0.1683 -5.2358 16 14 -0.1789 2.4138 -4.9555 17 1 0.6922 3.6065 -5.1112 18 1 -0.8002 2.0806 -6.2624 19 1 -1.2429 2.7046 -3.9612 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.6768 1.9562 0.8900 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 -1.7489 1.2492 27 1 3.1300 -0.7217 1.2490 28 1 1.6767 -0.2075 2.1393 29 1 4.7375 -3.0078 -2.9812 30 1 1.2988 0.3276 -6.1859 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261111224.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:13 Heat of formation + Delta-G solvation = -17.978847 kcal Electronic energy + Delta-G solvation = -14327.834809 eV Core-core repulsion = 11930.220646 eV Total energy + Delta-G solvation = -2397.614163 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.02620 -36.42603 -35.15016 -33.71121 -30.30745 -28.44999 -26.30502 -26.18329 -24.52257 -20.62463 -20.28912 -18.26709 -17.34197 -16.92595 -15.12903 -14.85906 -13.97557 -13.60263 -13.30947 -13.12040 -12.63849 -12.22278 -11.81680 -11.36977 -11.34290 -11.29942 -11.06346 -10.78551 -10.75788 -10.30989 -10.00626 -9.94893 -9.66145 -9.54678 -8.31757 -8.26792 -7.02673 -7.00795 -4.37199 2.83971 2.99550 3.04030 3.55740 3.81542 4.14625 4.64489 5.18229 5.53185 5.88781 5.97551 6.04373 6.38712 6.44544 6.49500 6.67431 6.69801 6.81504 6.86562 6.93099 7.06761 7.15210 7.32634 7.46968 7.61868 7.77911 8.04698 8.40322 8.65395 8.78444 9.55327 9.75080 10.05419 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.025754 B = 0.014430 C = 0.009880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.956394 B = 1939.940407 C = 2833.329549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.046 3.954 3 C -0.137 4.137 4 C -0.120 4.120 5 C -0.126 4.126 6 N -0.460 5.460 7 C 0.225 3.775 8 O -0.453 6.453 9 N -0.570 5.570 10 H 0.422 0.578 11 C 0.220 3.780 12 C -0.430 4.430 13 H 0.104 0.896 14 C 0.063 3.937 15 N -0.846 5.846 16 Si 0.928 3.072 17 H -0.269 1.269 18 H -0.278 1.278 19 H -0.259 1.259 20 H 0.066 0.934 21 H 0.038 0.962 22 H 0.045 0.955 23 H 0.038 0.962 24 H 0.044 0.956 25 H 0.066 0.934 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.035 0.965 29 H 0.362 0.638 30 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.300 3.095 2.528 4.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.045 3.955 3 C -0.194 4.194 4 C -0.177 4.177 5 C -0.257 4.257 6 N -0.189 5.189 7 C -0.067 4.067 8 O -0.251 6.251 9 N -0.197 5.197 10 H 0.268 0.732 11 C 0.101 3.899 12 C -0.466 4.466 13 H 0.121 0.879 14 C -0.150 4.150 15 N -0.478 5.478 16 Si 0.752 3.248 17 H -0.194 1.194 18 H -0.203 1.203 19 H -0.183 1.183 20 H 0.085 0.915 21 H 0.057 0.943 22 H 0.064 0.936 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.214 0.786 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.402 2.158 3.008 3.724 hybrid contribution -0.045 1.008 -1.823 2.084 sum -0.447 3.166 1.185 3.410 Atomic orbital electron populations 1.21911 0.95741 1.01029 1.00871 1.18250 0.93542 0.92951 0.90763 1.21898 1.00397 0.96259 1.00883 1.21600 1.00753 0.99786 0.95597 1.20155 1.13505 1.00135 0.91953 1.69202 1.17058 1.13961 1.18694 1.19673 1.07335 0.94490 0.85192 1.84824 1.21788 1.29294 1.89164 1.44093 1.42367 1.22630 1.10603 0.73213 1.18527 0.93591 0.89271 0.88470 1.18880 1.26956 1.08849 0.91887 0.87876 1.25994 0.94859 0.97539 0.96578 1.68982 1.38771 1.36228 1.03830 0.85953 0.79977 0.80263 0.78562 1.19398 1.20315 1.18305 0.91513 0.94258 0.93631 0.94251 0.93669 0.91517 0.93150 0.93182 0.94574 0.78601 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 8.32 37.16 0.31 -2.35 16 2 C 0.05 0.96 0.76 -155.66 -0.12 0.85 16 3 C -0.14 -2.59 8.32 37.15 0.31 -2.29 16 4 C -0.12 -2.30 7.97 37.16 0.30 -2.00 16 5 C -0.13 -3.16 5.60 -81.59 -0.46 -3.61 16 6 N -0.46 -12.00 10.52 -9.91 -0.10 -12.11 16 7 C 0.22 5.75 9.44 -88.41 -0.83 4.91 16 8 O -0.45 -10.01 13.62 -17.10 -0.23 -10.24 16 9 N -0.57 -14.80 5.88 -11.62 -0.07 -14.87 16 10 H 0.42 10.78 6.45 -40.82 -0.26 10.52 16 11 C 0.22 5.72 6.60 -83.55 -0.55 5.17 16 12 C -0.43 -10.63 7.66 -38.30 -0.29 -10.92 16 13 H 0.10 2.39 4.71 -52.49 -0.25 2.14 16 14 C 0.06 1.50 5.50 -17.28 -0.09 1.41 16 15 N -0.85 -20.53 10.78 55.55 0.60 -19.93 16 16 Si 0.93 17.91 29.56 -169.99 -5.03 12.89 16 17 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 18 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 19 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 20 H 0.07 1.34 5.76 -51.93 -0.30 1.04 16 21 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.07 1.31 5.76 -51.93 -0.30 1.02 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.36 6.09 9.06 45.56 0.41 6.50 16 30 H 0.29 6.38 8.30 -40.82 -0.34 6.04 16 LS Contribution 248.87 15.07 3.75 3.75 Total: -1.00 -28.31 248.87 -5.31 -33.62 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -2.79 Total: 15.73 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -1.43 Total: -8.83 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: 0.43 Total: -46.91 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: -0.23 Total: -10.24 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.89 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -28.31 -5.31 -33.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261111224.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.640 kcal (2) G-P(sol) polarization free energy of solvation -28.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds