Wall clock time and date at job start Mon Mar 30 2020 02:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 6 6 N 1.32955 * 126.13037 * 239.69343 * 5 2 1 7 7 C 1.31729 * 110.01384 * 179.82094 * 6 5 2 8 8 O 1.35135 * 125.31774 * 180.21028 * 7 6 5 9 9 N 1.36057 * 109.36468 * 0.45034 * 7 6 5 10 10 H 0.96999 * 126.55826 * 179.77001 * 9 7 6 11 11 C 1.38807 * 106.86761 * 359.72592 * 9 7 6 12 12 C 1.39957 * 126.99198 * 180.02562 * 11 9 7 13 13 H 1.07999 * 119.99672 * 179.97438 * 12 11 9 14 14 C 1.39950 * 119.99904 * 359.97438 * 12 11 9 15 15 N 1.30966 * 119.99997 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00133 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47056 * 89.99605 * 16 14 12 18 18 H 1.48493 * 109.47467 * 209.99874 * 16 14 12 19 19 H 1.48503 * 109.46831 * 330.00300 * 16 14 12 20 20 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 24 24 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 26 26 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 27 27 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 28 28 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 29 29 H 0.96694 * 114.00649 * 270.27018 * 8 7 6 30 30 H 0.97000 * 119.99872 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7105 -1.2305 6 7 2.8046 -1.7926 -1.2506 7 6 3.0493 -2.1488 -2.4950 8 8 3.7981 -3.2089 -2.8713 9 7 2.4347 -1.2795 -3.3422 10 1 2.4534 -1.3068 -4.3116 11 6 1.7752 -0.3468 -2.5537 12 6 1.0081 0.7373 -2.9952 13 1 0.5415 1.3964 -2.2780 14 6 0.8456 0.9673 -4.3661 15 7 1.4117 0.1683 -5.2358 16 14 -0.1789 2.4138 -4.9555 17 1 0.6922 3.6065 -5.1112 18 1 -0.8002 2.0806 -6.2624 19 1 -1.2429 2.7046 -3.9612 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.6768 1.9562 0.8900 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 -1.7489 1.2492 27 1 3.1300 -0.7217 1.2490 28 1 1.6767 -0.2075 2.1393 29 1 4.7375 -3.0078 -2.9812 30 1 1.2988 0.3276 -6.1859 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261111224.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:13 Heat of formation + Delta-G solvation = -39.271802 kcal Electronic energy + Delta-G solvation = -14328.758140 eV Core-core repulsion = 11930.220646 eV Total energy + Delta-G solvation = -2398.537495 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.91534 -38.16257 -36.82608 -35.53942 -32.23067 -30.30104 -27.81027 -27.72737 -26.37420 -22.41688 -22.14643 -20.15374 -19.11965 -18.73617 -16.92240 -16.58978 -15.78121 -15.27449 -14.94027 -14.75582 -14.30792 -14.00692 -13.53861 -12.93227 -12.88416 -12.80822 -12.74624 -12.39837 -12.31347 -11.94691 -11.58901 -11.58360 -11.28997 -11.28271 -10.23980 -10.21203 -8.91501 -8.80586 -6.24761 1.23568 1.43247 1.56944 1.78571 2.20270 2.33096 2.73500 3.32752 3.76932 4.31579 4.36488 4.46526 4.88044 4.90508 5.02480 5.13879 5.14788 5.20597 5.22290 5.28261 5.42270 5.50680 5.71686 5.79483 5.88602 5.93107 6.36157 6.54562 6.79501 6.94474 7.63872 7.81625 8.28587 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.025754 B = 0.014430 C = 0.009880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.956394 B = 1939.940407 C = 2833.329549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.036 3.964 3 C -0.129 4.129 4 C -0.111 4.111 5 C -0.138 4.138 6 N -0.480 5.480 7 C 0.207 3.793 8 O -0.456 6.456 9 N -0.578 5.578 10 H 0.419 0.581 11 C 0.189 3.811 12 C -0.448 4.448 13 H 0.115 0.885 14 C 0.022 3.978 15 N -0.870 5.870 16 Si 0.999 3.001 17 H -0.263 1.263 18 H -0.275 1.275 19 H -0.250 1.250 20 H 0.054 0.946 21 H 0.074 0.926 22 H 0.030 0.970 23 H 0.074 0.926 24 H 0.034 0.966 25 H 0.055 0.945 26 H 0.033 0.967 27 H 0.037 0.963 28 H 0.071 0.929 29 H 0.387 0.613 30 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.167 4.601 3.120 5.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.035 3.965 3 C -0.187 4.187 4 C -0.169 4.169 5 C -0.269 4.269 6 N -0.209 5.209 7 C -0.084 4.084 8 O -0.256 6.256 9 N -0.205 5.205 10 H 0.265 0.735 11 C 0.072 3.928 12 C -0.483 4.483 13 H 0.132 0.868 14 C -0.188 4.188 15 N -0.502 5.502 16 Si 0.819 3.181 17 H -0.188 1.188 18 H -0.200 1.200 19 H -0.174 1.174 20 H 0.073 0.927 21 H 0.093 0.907 22 H 0.050 0.950 23 H 0.093 0.907 24 H 0.053 0.947 25 H 0.074 0.926 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.090 0.910 29 H 0.242 0.758 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.242 3.648 3.609 5.279 hybrid contribution 0.287 0.471 -2.035 2.108 sum -0.955 4.119 1.574 4.511 Atomic orbital electron populations 1.21835 0.94536 1.00479 1.02016 1.18501 0.94561 0.93742 0.89701 1.21814 0.99705 0.95145 1.02021 1.21517 0.99920 0.99134 0.96312 1.20925 1.12839 0.99886 0.93280 1.69231 1.17915 1.14814 1.18967 1.19965 1.08141 0.94958 0.85334 1.84732 1.23449 1.28438 1.88979 1.44181 1.42777 1.23037 1.10527 0.73538 1.19069 0.94449 0.90115 0.89187 1.19188 1.27265 1.08931 0.92950 0.86785 1.26925 0.95579 1.00019 0.96298 1.69025 1.39269 1.37450 1.04451 0.84893 0.78417 0.76693 0.78055 1.18780 1.20031 1.17357 0.92691 0.90682 0.95032 0.90742 0.94701 0.92644 0.94742 0.94381 0.91019 0.75808 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.82 8.32 71.98 0.60 -4.22 16 2 C 0.04 1.46 0.76 -52.93 -0.04 1.42 16 3 C -0.13 -4.65 8.32 71.98 0.60 -4.05 16 4 C -0.11 -4.08 7.97 71.98 0.57 -3.51 16 5 C -0.14 -6.93 5.60 42.72 0.24 -6.69 16 6 N -0.48 -25.32 10.52 -298.71 -3.14 -28.46 16 7 C 0.21 10.75 9.44 179.58 1.69 12.45 16 8 O -0.46 -20.18 13.62 -84.12 -1.15 -21.33 16 9 N -0.58 -30.58 5.88 -301.84 -1.77 -32.35 16 10 H 0.42 21.90 6.45 -92.71 -0.60 21.30 16 11 C 0.19 9.97 6.60 38.79 0.26 10.23 16 12 C -0.45 -22.06 7.66 23.10 0.18 -21.88 16 13 H 0.11 5.19 4.71 -2.91 -0.01 5.18 16 14 C 0.02 1.04 5.50 85.24 0.47 1.51 16 15 N -0.87 -42.18 10.78 21.84 0.24 -41.94 16 16 Si 1.00 35.56 29.56 68.60 2.03 37.58 16 17 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 18 H -0.28 -9.61 7.11 99.48 0.71 -8.91 16 19 H -0.25 -8.49 7.11 99.48 0.71 -7.79 16 20 H 0.05 2.13 5.76 -2.39 -0.01 2.11 16 21 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 22 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 23 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.05 2.10 5.76 -2.39 -0.01 2.08 16 26 H 0.03 1.33 8.14 -2.39 -0.02 1.32 16 27 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.39 12.88 9.06 -74.06 -0.67 12.21 16 30 H 0.29 12.97 8.30 -92.71 -0.77 12.20 16 Total: -1.00 -60.37 248.87 0.67 -59.69 By element: Atomic # 1 Polarization: 41.63 SS G_CDS: -0.09 Total: 41.53 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: 4.57 Total: -14.73 kcal Atomic # 7 Polarization: -98.07 SS G_CDS: -4.68 Total: -102.75 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -1.15 Total: -21.33 kcal Atomic # 14 Polarization: 35.56 SS G_CDS: 2.03 Total: 37.58 kcal Total: -60.37 0.67 -59.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261111224.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.422 kcal (2) G-P(sol) polarization free energy of solvation -60.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds