Wall clock time and date at job start Mon Mar 30 2020 02:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.36879 * 126.40033 * 265.02702 * 3 2 1 5 5 C 1.34675 * 106.81988 * 180.02562 * 4 3 2 6 6 N 1.34132 * 108.01601 * 359.97438 * 5 4 3 7 7 C 1.30493 * 109.26007 * 359.73026 * 6 5 4 8 8 C 1.50696 * 125.65484 * 180.29184 * 7 6 5 9 9 H 1.08999 * 109.47588 * 165.17243 * 8 7 6 10 10 O 1.42904 * 109.46761 * 45.17256 * 8 7 6 11 11 C 1.53001 * 109.46805 * 285.17690 * 8 7 6 12 12 C 1.50707 * 109.46813 * 184.99649 * 11 8 7 13 13 H 1.07994 * 119.99961 * 359.97438 * 12 11 8 14 14 C 1.37881 * 119.99790 * 179.97438 * 12 11 8 15 15 N 1.31508 * 119.99826 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99838 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46830 * 90.00460 * 16 14 12 18 18 H 1.48496 * 109.47430 * 210.00202 * 16 14 12 19 19 H 1.48497 * 109.47687 * 330.00782 * 16 14 12 20 20 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 21 21 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 24 24 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 25 25 H 1.07997 * 126.59311 * 359.96512 * 4 3 2 26 26 H 1.08002 * 125.99055 * 180.02562 * 5 4 3 27 27 H 0.96703 * 113.99811 * 300.00164 * 10 8 7 28 28 H 1.08995 * 109.47049 * 304.99033 * 11 8 7 29 29 H 1.08995 * 109.47169 * 64.99758 * 11 8 7 30 30 H 0.97003 * 119.99889 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3790 2.1152 -1.0976 5 6 2.7656 3.3244 -0.6479 6 7 2.6436 3.3287 0.6879 7 6 2.1907 2.1702 1.0825 8 6 1.9105 1.7765 2.5098 9 1 1.3046 0.8705 2.5247 10 8 1.2050 2.8322 3.1654 11 6 3.2321 1.5182 3.2363 12 6 2.9499 1.0066 4.6255 13 1 1.9301 0.8789 4.9572 14 6 3.9938 0.7016 5.4731 15 7 5.2356 0.8576 5.0694 16 14 3.6440 0.0682 7.1952 17 1 3.5587 -1.4142 7.1695 18 1 4.7386 0.4852 8.1079 19 1 2.3566 0.6297 7.6773 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 2.3587 1.7874 -2.1264 26 1 3.1122 4.1467 -1.2562 27 1 1.6859 3.6708 3.1898 28 1 3.8100 0.7757 2.6862 29 1 3.7995 2.4466 3.2994 30 1 5.9700 0.6433 5.6658 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261135185.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:16 Heat of formation + Delta-G solvation = -1.774093 kcal Electronic energy + Delta-G solvation = -13910.167910 eV Core-core repulsion = 11513.256438 eV Total energy + Delta-G solvation = -2396.911472 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.70983 -36.43088 -34.74342 -32.85475 -30.38810 -29.86163 -28.24994 -24.84882 -23.56763 -21.68307 -20.82190 -19.32242 -17.26390 -16.21713 -15.39000 -14.97496 -14.76715 -14.46834 -13.94417 -13.52509 -13.25457 -12.98521 -12.51780 -12.20197 -12.02462 -11.33720 -11.15602 -10.82905 -10.68676 -10.50436 -10.16673 -9.54322 -9.26786 -9.15700 -9.08377 -8.39465 -7.90051 -6.00913 -4.03578 2.41864 3.09655 3.32570 3.39281 3.44236 3.59622 4.45536 4.73053 4.98218 4.99210 5.05961 5.26667 5.32382 5.43925 5.55728 5.66562 5.69223 5.91721 6.04141 6.28784 6.54374 6.70488 7.14654 7.48635 7.54274 7.67525 7.95826 8.32417 8.45355 8.60178 9.02801 9.59995 11.10285 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.039583 B = 0.008462 C = 0.007952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.201031 B = 3308.098770 C = 3520.158678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.096 3.904 3 N -0.453 5.453 4 C -0.075 4.075 5 C -0.031 4.031 6 N -0.492 5.492 7 C 0.201 3.799 8 C 0.194 3.806 9 H 0.096 0.904 10 O -0.548 6.548 11 C 0.006 3.994 12 C -0.514 4.514 13 H 0.062 0.938 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.895 3.105 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.272 1.272 20 H 0.068 0.932 21 H 0.059 0.941 22 H 0.075 0.925 23 H 0.098 0.902 24 H 0.089 0.911 25 H 0.167 0.833 26 H 0.164 0.836 27 H 0.379 0.621 28 H 0.021 0.979 29 H 0.031 0.969 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.932 -1.660 -11.254 13.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.026 4.026 3 N -0.137 5.137 4 C -0.207 4.207 5 C -0.180 4.180 6 N -0.211 5.211 7 C -0.062 4.062 8 C 0.133 3.867 9 H 0.113 0.887 10 O -0.352 6.352 11 C -0.032 4.032 12 C -0.552 4.552 13 H 0.080 0.920 14 C -0.145 4.145 15 N -0.534 5.534 16 Si 0.723 3.277 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.197 1.197 20 H 0.087 0.913 21 H 0.078 0.922 22 H 0.094 0.906 23 H 0.117 0.883 24 H 0.107 0.893 25 H 0.184 0.816 26 H 0.181 0.819 27 H 0.226 0.774 28 H 0.040 0.960 29 H 0.049 0.951 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.069 -1.628 -10.605 12.848 hybrid contribution 0.335 -0.652 0.016 0.733 sum -6.734 -2.280 -10.589 12.754 Atomic orbital electron populations 1.22160 0.94232 1.02972 1.03280 1.21865 0.95573 0.80381 1.04797 1.45483 1.48879 1.12496 1.06858 1.22550 1.11264 0.94452 0.92482 1.22222 1.06908 0.97199 0.91626 1.70151 1.18896 1.20406 1.11666 1.24967 1.01111 0.87377 0.92753 1.20554 0.97002 0.89348 0.79831 0.88664 1.86425 1.47223 1.22785 1.78739 1.19708 0.90072 0.98316 0.95132 1.21109 0.93032 1.43366 0.97722 0.91997 1.25016 0.95039 0.95782 0.98634 1.69981 0.98312 1.48673 1.36424 0.86541 0.78044 0.78921 0.84207 1.20754 1.21245 1.19687 0.91324 0.92216 0.90632 0.88343 0.89286 0.81564 0.81877 0.77359 0.96047 0.95101 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 10.24 37.16 0.38 -1.46 16 2 C 0.10 1.21 6.32 -4.04 -0.03 1.19 16 3 N -0.45 -7.45 2.75 -113.90 -0.31 -7.76 16 4 C -0.08 -1.12 11.58 -16.56 -0.19 -1.31 16 5 C -0.03 -0.53 11.87 -17.81 -0.21 -0.74 16 6 N -0.49 -10.16 11.14 -10.81 -0.12 -10.28 16 7 C 0.20 4.04 6.77 -155.41 -1.05 2.99 16 8 C 0.19 4.21 3.21 -27.88 -0.09 4.12 16 9 H 0.10 1.95 7.07 -51.93 -0.37 1.58 16 10 O -0.55 -12.01 13.08 -35.23 -0.46 -12.47 16 11 C 0.01 0.15 4.64 -27.88 -0.13 0.02 16 12 C -0.51 -14.47 8.88 -34.44 -0.31 -14.77 16 13 H 0.06 1.72 7.74 -52.49 -0.41 1.31 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 16 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H 0.07 0.88 8.00 -51.93 -0.42 0.47 16 21 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.10 1.31 7.60 -51.93 -0.39 0.92 16 24 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.17 1.80 8.06 -52.49 -0.42 1.38 16 26 H 0.16 2.24 8.06 -52.49 -0.42 1.81 16 27 H 0.38 7.71 8.94 45.56 0.41 8.12 16 28 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 LS Contribution 264.55 15.07 3.99 3.99 Total: -1.00 -33.02 264.55 -6.19 -39.20 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -3.27 Total: 5.27 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -1.72 Total: -8.44 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.30 Total: -44.24 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -0.46 Total: -12.47 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -33.02 -6.19 -39.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261135185.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.430 kcal (2) G-P(sol) polarization free energy of solvation -33.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds