Wall clock time and date at job start Mon Mar 30 2020 02:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.36879 * 126.40033 * 265.02702 * 3 2 1 5 5 C 1.34675 * 106.81988 * 180.02562 * 4 3 2 6 6 N 1.34132 * 108.01601 * 359.97438 * 5 4 3 7 7 C 1.30493 * 109.26007 * 359.73026 * 6 5 4 8 8 C 1.50696 * 125.65484 * 180.29184 * 7 6 5 9 9 H 1.08999 * 109.47588 * 165.17243 * 8 7 6 10 10 O 1.42904 * 109.46761 * 45.17256 * 8 7 6 11 11 C 1.53001 * 109.46805 * 285.17690 * 8 7 6 12 12 C 1.50707 * 109.46813 * 184.99649 * 11 8 7 13 13 H 1.07994 * 119.99961 * 359.97438 * 12 11 8 14 14 C 1.37881 * 119.99790 * 179.97438 * 12 11 8 15 15 N 1.31508 * 119.99826 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99838 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46830 * 90.00460 * 16 14 12 18 18 H 1.48496 * 109.47430 * 210.00202 * 16 14 12 19 19 H 1.48497 * 109.47687 * 330.00782 * 16 14 12 20 20 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 21 21 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 24 24 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 25 25 H 1.07997 * 126.59311 * 359.96512 * 4 3 2 26 26 H 1.08002 * 125.99055 * 180.02562 * 5 4 3 27 27 H 0.96703 * 113.99811 * 300.00164 * 10 8 7 28 28 H 1.08995 * 109.47049 * 304.99033 * 11 8 7 29 29 H 1.08995 * 109.47169 * 64.99758 * 11 8 7 30 30 H 0.97003 * 119.99889 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3790 2.1152 -1.0976 5 6 2.7656 3.3244 -0.6479 6 7 2.6436 3.3287 0.6879 7 6 2.1907 2.1702 1.0825 8 6 1.9105 1.7765 2.5098 9 1 1.3046 0.8705 2.5247 10 8 1.2050 2.8322 3.1654 11 6 3.2321 1.5182 3.2363 12 6 2.9499 1.0066 4.6255 13 1 1.9301 0.8789 4.9572 14 6 3.9938 0.7016 5.4731 15 7 5.2356 0.8576 5.0694 16 14 3.6440 0.0682 7.1952 17 1 3.5587 -1.4142 7.1695 18 1 4.7386 0.4852 8.1079 19 1 2.3566 0.6297 7.6773 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 2.3587 1.7874 -2.1264 26 1 3.1122 4.1467 -1.2562 27 1 1.6859 3.6708 3.1898 28 1 3.8100 0.7757 2.6862 29 1 3.7995 2.4466 3.2994 30 1 5.9700 0.6433 5.6658 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261135185.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:15 Heat of formation + Delta-G solvation = -25.499923 kcal Electronic energy + Delta-G solvation = -13911.196739 eV Core-core repulsion = 11513.256438 eV Total energy + Delta-G solvation = -2397.940301 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.03614 -38.20445 -35.88549 -35.00517 -32.15959 -31.01862 -29.90620 -26.71737 -24.69205 -23.52910 -22.12359 -20.82536 -18.83617 -18.03227 -17.16555 -16.42963 -16.25230 -16.10712 -15.36739 -14.93534 -14.57866 -14.42885 -14.26247 -13.53633 -13.20003 -12.95078 -12.79821 -12.58021 -12.46148 -12.24160 -12.07528 -11.30801 -11.04148 -10.80482 -10.60931 -10.56209 -9.25119 -8.20949 -6.32448 1.11564 1.40840 1.43056 1.54924 1.90878 2.20658 2.41994 3.11665 3.50955 3.63751 3.80115 3.90488 4.08975 4.35696 4.37330 4.51965 4.63199 4.74552 4.81228 4.85327 5.18806 5.28780 5.40415 5.53038 5.74400 5.91465 6.13842 6.26813 6.72736 6.83018 7.21440 7.36371 8.90797 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.039583 B = 0.008462 C = 0.007952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.201031 B = 3308.098770 C = 3520.158678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.086 3.914 3 N -0.449 5.449 4 C -0.047 4.047 5 C -0.062 4.062 6 N -0.527 5.527 7 C 0.163 3.837 8 C 0.209 3.791 9 H 0.105 0.895 10 O -0.555 6.555 11 C 0.019 3.981 12 C -0.531 4.531 13 H 0.064 0.936 14 C 0.001 3.999 15 N -0.933 5.933 16 Si 0.968 3.032 17 H -0.268 1.268 18 H -0.283 1.283 19 H -0.265 1.265 20 H 0.042 0.958 21 H 0.068 0.932 22 H 0.103 0.897 23 H 0.084 0.916 24 H 0.126 0.874 25 H 0.217 0.783 26 H 0.189 0.811 27 H 0.382 0.618 28 H -0.002 1.002 29 H -0.006 1.006 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.989 -2.840 -12.348 14.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.035 4.035 3 N -0.133 5.133 4 C -0.181 4.181 5 C -0.210 4.210 6 N -0.247 5.247 7 C -0.100 4.100 8 C 0.147 3.853 9 H 0.123 0.877 10 O -0.359 6.359 11 C -0.019 4.019 12 C -0.569 4.569 13 H 0.082 0.918 14 C -0.197 4.197 15 N -0.573 5.573 16 Si 0.792 3.208 17 H -0.193 1.193 18 H -0.209 1.209 19 H -0.189 1.189 20 H 0.061 0.939 21 H 0.087 0.913 22 H 0.121 0.879 23 H 0.102 0.898 24 H 0.144 0.856 25 H 0.234 0.766 26 H 0.206 0.794 27 H 0.230 0.770 28 H 0.016 0.984 29 H 0.013 0.987 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.147 -2.825 -11.702 14.536 hybrid contribution 0.684 -0.273 0.240 0.775 sum -7.463 -3.098 -11.462 14.024 Atomic orbital electron populations 1.22116 0.92765 1.04543 1.02416 1.22223 0.96780 0.78508 1.05949 1.45728 1.47775 1.13539 1.06236 1.23322 1.07643 0.93231 0.93856 1.22809 1.08278 0.99355 0.90563 1.70038 1.19266 1.21315 1.14078 1.24327 1.04279 0.88583 0.92795 1.20125 0.94456 0.89704 0.80968 0.87698 1.86381 1.47304 1.23066 1.79183 1.19477 0.91865 0.95546 0.95033 1.21450 0.93204 1.43402 0.98799 0.91816 1.25970 0.94692 0.95831 1.03192 1.70117 0.99388 1.49673 1.38151 0.85401 0.78031 0.78817 0.78529 1.19331 1.20883 1.18912 0.93891 0.91276 0.87851 0.89801 0.85584 0.76628 0.79408 0.76962 0.98408 0.98732 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 10.24 71.98 0.74 -2.36 16 2 C 0.09 1.97 6.32 86.38 0.55 2.52 16 3 N -0.45 -14.04 2.75 -514.28 -1.41 -15.45 16 4 C -0.05 -1.27 11.58 83.09 0.96 -0.30 16 5 C -0.06 -2.03 11.87 83.52 0.99 -1.04 16 6 N -0.53 -21.96 11.14 -188.12 -2.10 -24.05 16 7 C 0.16 6.61 6.77 138.13 0.94 7.54 16 8 C 0.21 9.30 3.21 29.85 0.10 9.39 16 9 H 0.11 4.37 7.07 -2.39 -0.02 4.36 16 10 O -0.55 -24.99 13.08 -148.98 -1.95 -26.94 16 11 C 0.02 1.03 4.64 29.85 0.14 1.17 16 12 C -0.53 -30.50 8.88 25.60 0.23 -30.27 16 13 H 0.06 3.56 7.74 -2.91 -0.02 3.54 16 14 C 0.00 0.06 5.46 84.66 0.46 0.52 16 15 N -0.93 -57.42 13.29 21.45 0.28 -57.14 16 16 Si 0.97 44.66 29.54 68.60 2.03 46.68 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 19 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 20 H 0.04 1.05 8.00 -2.39 -0.02 1.03 16 21 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.08 2.17 7.60 -2.39 -0.02 2.15 16 24 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.22 3.48 8.06 -2.91 -0.02 3.45 16 26 H 0.19 4.81 8.06 -2.91 -0.02 4.79 16 27 H 0.38 16.30 8.94 -74.06 -0.66 15.64 16 28 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 29 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 30 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -73.00 264.55 2.42 -70.58 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.47 Total: 19.14 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 5.10 Total: -12.83 kcal Atomic # 7 Polarization: -93.41 SS G_CDS: -3.23 Total: -96.64 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -1.95 Total: -26.94 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -73.00 2.42 -70.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261135185.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.080 kcal (2) G-P(sol) polarization free energy of solvation -72.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds