Wall clock time and date at job start Mon Mar 30 2020 02:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00052 * 2 1 4 4 H 1.48500 * 109.47255 * 84.81598 * 3 2 1 5 5 H 1.48497 * 109.47229 * 324.81369 * 3 2 1 6 6 H 1.48507 * 109.46999 * 204.81536 * 3 2 1 7 7 C 1.37874 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99835 * 355.86581 * 7 2 1 9 9 C 1.50703 * 120.00202 * 175.86330 * 7 2 1 10 10 C 1.52995 * 110.43708 * 278.70849 * 9 7 2 11 11 C 1.54893 * 110.75740 * 44.26676 * 10 9 7 12 12 C 1.54263 * 104.19570 * 203.74476 * 11 10 9 13 13 C 1.53879 * 106.60099 * 23.60521 * 12 11 10 14 14 C 1.54272 * 106.59680 * 0.02562 * 13 12 11 15 15 C 1.54814 * 110.48251 * 41.39561 * 9 7 2 16 16 C 1.54997 * 102.09129 * 97.79600 * 15 9 7 17 17 O 1.44382 * 103.49024 * 37.02215 * 16 15 9 18 18 C 1.43737 * 106.97347 * 319.93897 * 17 16 15 19 19 H 0.97001 * 120.00016 * 0.02562 * 1 2 3 20 20 H 1.09001 * 110.67163 * 167.70068 * 10 9 7 21 21 H 1.08995 * 110.48238 * 322.41868 * 11 10 9 22 22 H 1.09000 * 110.48590 * 85.06655 * 11 10 9 23 23 H 1.09009 * 110.03294 * 264.32449 * 12 11 10 24 24 H 1.08998 * 110.03279 * 142.89320 * 12 11 10 25 25 H 1.08994 * 110.03598 * 240.71730 * 13 12 11 26 26 H 1.09007 * 110.06677 * 119.30607 * 13 12 11 27 27 H 1.09003 * 110.48401 * 217.71205 * 14 13 12 28 28 H 1.08997 * 110.48972 * 95.06428 * 14 13 12 29 29 H 1.09002 * 110.90467 * 215.99647 * 15 9 7 30 30 H 1.08998 * 110.91050 * 339.59736 * 15 9 7 31 31 H 1.08993 * 110.61696 * 278.51873 * 16 15 9 32 32 H 1.09001 * 110.75025 * 155.58309 * 16 15 9 33 33 H 1.09006 * 109.87961 * 267.08905 * 18 17 16 34 34 H 1.08999 * 110.00552 * 146.01192 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3871 2.1097 1.3943 5 1 1.5058 2.6185 -0.8068 6 1 3.5973 1.4109 -0.5876 7 6 2.0045 -1.1940 -0.0005 8 1 1.4665 -2.1282 0.0665 9 6 3.5086 -1.1958 -0.0947 10 6 3.9530 -1.0300 -1.5492 11 6 3.1285 0.0768 -2.2524 12 6 3.2228 -0.2757 -3.7512 13 6 3.5263 -1.7822 -3.8303 14 6 3.6053 -2.2927 -2.3766 15 6 4.1080 -0.0750 0.7892 16 6 4.4944 -0.8480 2.0759 17 8 4.9602 -2.1205 1.5774 18 6 4.0848 -2.4951 0.5006 19 1 -0.4850 0.8401 -0.0004 20 1 5.0200 -0.8140 -1.6033 21 1 2.0913 0.0499 -1.9187 22 1 3.5660 1.0570 -2.0628 23 1 4.0273 0.2922 -4.2186 24 1 2.2760 -0.0591 -4.2460 25 1 4.4780 -1.9453 -4.3359 26 1 2.7273 -2.2973 -4.3636 27 1 4.3911 -3.0416 -2.2774 28 1 2.6450 -2.7021 -2.0633 29 1 4.9887 0.3622 0.3188 30 1 3.3630 0.6909 1.0046 31 1 3.6245 -0.9827 2.7186 32 1 5.2903 -0.3314 2.6124 33 1 3.2759 -3.1193 0.8806 34 1 4.6433 -3.0367 -0.2628 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261145884.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:37 Heat of formation + Delta-G solvation = -24.439442 kcal Electronic energy + Delta-G solvation = -15313.016283 eV Core-core repulsion = 13018.662311 eV Total energy + Delta-G solvation = -2294.353972 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.40710 -36.84331 -33.33719 -31.32862 -29.28852 -27.97017 -26.31787 -24.73022 -22.34028 -20.95806 -19.43525 -18.43191 -16.38094 -15.84334 -15.53299 -15.21627 -14.27757 -13.92607 -13.41347 -12.83338 -12.66351 -12.42095 -12.19423 -11.76995 -11.28037 -11.09279 -10.88804 -10.51617 -10.15043 -10.04401 -9.86829 -9.71142 -9.55647 -9.25272 -8.92858 -8.81375 -8.59384 -8.36528 -6.14834 -4.14757 3.23563 3.30729 3.38570 4.29398 4.76968 5.08034 5.28912 5.41984 5.46682 5.70415 5.77552 5.88426 6.06754 6.16930 6.23990 6.27597 6.31303 6.33882 6.42947 6.48608 6.51810 6.61175 6.64858 6.68161 6.82275 6.87774 7.04620 7.10058 7.20731 7.46600 7.55560 7.80788 8.44706 8.86385 9.44847 10.95668 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.023369 B = 0.020395 C = 0.013995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.902951 B = 1372.573621 C = 2000.302506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.069 3.931 3 Si 0.884 3.116 4 H -0.299 1.299 5 H -0.308 1.308 6 H -0.235 1.235 7 C -0.501 4.501 8 H 0.078 0.922 9 C 0.024 3.976 10 C -0.068 4.068 11 C -0.147 4.147 12 C -0.121 4.121 13 C -0.120 4.120 14 C -0.112 4.112 15 C -0.150 4.150 16 C 0.054 3.946 17 O -0.395 6.395 18 C 0.061 3.939 19 H 0.264 0.736 20 H 0.048 0.952 21 H 0.106 0.894 22 H 0.058 0.942 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.496 -0.341 -3.193 8.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.132 4.132 3 Si 0.718 3.282 4 H -0.229 1.229 5 H -0.237 1.237 6 H -0.160 1.160 7 C -0.538 4.538 8 H 0.096 0.904 9 C 0.023 3.977 10 C -0.087 4.087 11 C -0.184 4.184 12 C -0.159 4.159 13 C -0.158 4.158 14 C -0.150 4.150 15 C -0.187 4.187 16 C -0.022 4.022 17 O -0.315 6.315 18 C -0.015 4.015 19 H 0.074 0.926 20 H 0.067 0.933 21 H 0.124 0.876 22 H 0.076 0.924 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.495 -0.388 -3.142 8.136 hybrid contribution 0.033 1.161 -0.031 1.162 sum 7.528 0.773 -3.172 8.206 Atomic orbital electron populations 1.69902 1.06244 1.27022 1.50132 1.25184 0.94802 0.99143 0.94083 0.87592 0.81493 0.82947 0.76131 1.22896 1.23743 1.16009 1.20764 0.87676 0.94557 1.50819 0.90434 1.19822 0.96833 0.90147 0.90948 1.22131 0.96377 0.94495 0.95735 1.23204 1.04033 0.97892 0.93256 1.22118 0.99995 0.95773 0.98017 1.22086 0.99886 0.96094 0.97696 1.22356 1.01692 0.97252 0.93651 1.23687 0.98955 0.99004 0.97009 1.23404 0.98335 0.84217 0.96260 1.88681 1.53940 1.37563 1.51287 1.23393 0.92224 0.97788 0.88098 0.92586 0.93346 0.87588 0.92407 0.93367 0.92745 0.93185 0.92712 0.93288 0.90278 0.92021 0.92506 0.92235 0.90711 0.92623 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.27 13.96 55.43 0.77 -25.49 16 2 C 0.07 1.88 4.11 -17.82 -0.07 1.80 16 3 Si 0.88 21.19 20.55 -169.99 -3.49 17.70 16 4 H -0.30 -7.26 7.04 56.52 0.40 -6.86 16 5 H -0.31 -7.58 7.11 56.52 0.40 -7.18 16 6 H -0.23 -5.12 3.14 56.52 0.18 -4.94 16 7 C -0.50 -13.05 7.18 -34.44 -0.25 -13.30 16 8 H 0.08 2.22 7.83 -52.48 -0.41 1.81 16 9 C 0.02 0.52 0.36 -154.13 -0.06 0.47 16 10 C -0.07 -1.39 2.12 -88.62 -0.19 -1.58 16 11 C -0.15 -3.08 3.84 -25.07 -0.10 -3.17 16 12 C -0.12 -2.14 6.80 -25.61 -0.17 -2.32 16 13 C -0.12 -1.98 6.80 -25.61 -0.17 -2.16 16 14 C -0.11 -2.07 5.22 -25.06 -0.13 -2.20 16 15 C -0.15 -3.21 4.05 -24.72 -0.10 -3.31 16 16 C 0.05 1.08 7.72 38.21 0.29 1.37 16 17 O -0.40 -8.27 11.52 -35.23 -0.41 -8.68 16 18 C 0.06 1.27 6.63 37.73 0.25 1.52 16 19 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 20 H 0.05 0.94 7.92 -51.93 -0.41 0.53 16 21 H 0.11 2.56 4.02 -51.93 -0.21 2.35 16 22 H 0.06 1.19 5.31 -51.93 -0.28 0.91 16 23 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 24 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.81 7.33 -51.93 -0.38 0.43 16 28 H 0.08 1.61 7.37 -51.93 -0.38 1.23 16 29 H 0.06 1.23 7.33 -51.93 -0.38 0.85 16 30 H 0.06 1.31 1.98 -51.93 -0.10 1.21 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.06 1.20 7.54 -51.93 -0.39 0.81 16 34 H 0.07 1.27 6.34 -51.93 -0.33 0.94 16 LS Contribution 238.29 15.07 3.59 3.59 Total: -1.00 -28.02 238.29 -5.40 -33.43 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -5.17 Total: 2.32 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: -0.69 Total: -22.87 kcal Atomic # 7 Polarization: -26.27 SS G_CDS: 0.77 Total: -25.49 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -0.41 Total: -8.68 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -3.49 Total: 17.70 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -28.02 -5.40 -33.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261145884.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.986 kcal (2) G-P(sol) polarization free energy of solvation -28.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds