Wall clock time and date at job start Mon Mar 30 2020 02:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99638 * 2 1 4 4 H 1.48505 * 109.46639 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47132 * 299.99578 * 3 2 1 6 6 H 1.48492 * 109.47594 * 59.99988 * 3 2 1 7 7 C 1.37874 * 119.99742 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99295 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00198 * 0.02562 * 7 2 1 10 10 C 1.53004 * 110.45452 * 181.90084 * 9 7 2 11 11 C 1.54893 * 110.75421 * 170.72536 * 10 9 7 12 12 C 1.54269 * 104.19518 * 203.74398 * 11 10 9 13 13 C 1.53884 * 106.59629 * 23.61115 * 12 11 10 14 14 C 1.54262 * 106.59930 * 359.97438 * 13 12 11 15 15 C 1.54510 * 110.50940 * 59.30117 * 9 7 2 16 16 C 1.54477 * 104.18108 * 241.28242 * 15 9 7 17 17 O 1.44642 * 104.69773 * 336.19290 * 16 15 9 18 18 C 1.44415 * 105.37338 * 40.34325 * 17 16 15 19 19 H 0.97005 * 120.00133 * 359.97438 * 1 2 3 20 20 H 1.08999 * 110.67335 * 294.16503 * 10 9 7 21 21 H 1.09002 * 110.48316 * 322.42076 * 11 10 9 22 22 H 1.09000 * 110.48451 * 85.06550 * 11 10 9 23 23 H 1.08994 * 110.03134 * 264.32969 * 12 11 10 24 24 H 1.09000 * 110.07171 * 142.91463 * 12 11 10 25 25 H 1.09003 * 110.02654 * 240.71192 * 13 12 11 26 26 H 1.08998 * 110.03059 * 119.28309 * 13 12 11 27 27 H 1.09000 * 110.48707 * 217.71199 * 14 13 12 28 28 H 1.09006 * 110.48634 * 95.06970 * 14 13 12 29 29 H 1.09002 * 110.51305 * 359.97438 * 15 9 7 30 30 H 1.08994 * 110.51141 * 122.57102 * 15 9 7 31 31 H 1.09006 * 110.37498 * 94.92285 * 16 15 9 32 32 H 1.09000 * 110.37254 * 217.25804 * 16 15 9 33 33 H 1.08998 * 110.37627 * 200.73568 * 18 17 16 34 34 H 1.09004 * 110.46797 * 78.44683 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2244 -3.6786 0.0487 11 6 1.4648 -5.0080 0.2825 12 6 2.5226 -5.9442 0.9026 13 6 3.5876 -5.0389 1.5461 14 6 3.1401 -3.5842 1.2941 15 6 0.3410 -2.5988 -1.2442 16 6 -1.0859 -2.7064 -0.6621 17 8 -0.8992 -3.2320 0.6724 18 6 0.2673 -2.5563 1.1903 19 1 -0.4850 0.8401 0.0004 20 1 2.8182 -3.7250 -0.8642 21 1 0.6362 -4.8573 0.9745 22 1 1.1044 -5.4129 -0.6632 23 1 2.9762 -6.5608 0.1266 24 1 2.0630 -6.5775 1.6614 25 1 4.5580 -5.2163 1.0825 26 1 3.6441 -5.2322 2.6173 27 1 4.0023 -2.9503 1.0871 28 1 2.5818 -3.2032 2.1494 29 1 0.4357 -1.7039 -1.8593 30 1 0.5845 -3.4883 -1.8251 31 1 -1.5537 -1.7227 -0.6198 32 1 -1.6893 -3.3890 -1.2605 33 1 0.7005 -3.1241 2.0138 34 1 0.0101 -1.5492 1.5187 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261145887.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:39 Heat of formation + Delta-G solvation = -64.691673 kcal Electronic energy + Delta-G solvation = -15145.104360 eV Core-core repulsion = 12849.004920 eV Total energy + Delta-G solvation = -2296.099440 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.00097 -36.30194 -33.16698 -30.68617 -28.53885 -27.87090 -26.03683 -24.51935 -21.69718 -20.40121 -19.41719 -18.00956 -16.31250 -15.62070 -14.88198 -14.45264 -13.96861 -13.78044 -13.38679 -12.64014 -12.29287 -11.91077 -11.49171 -11.15405 -11.09512 -10.71491 -10.63667 -10.46025 -10.32237 -10.08733 -9.96252 -9.89170 -9.77161 -9.34760 -8.85458 -8.71147 -8.35849 -8.14641 -5.99994 -4.10066 3.26135 3.35462 3.38722 4.38894 5.22257 5.35387 5.37514 5.39663 5.46534 6.08215 6.11090 6.22829 6.28551 6.30137 6.40335 6.48192 6.54599 6.58389 6.62637 6.77892 6.83491 6.96416 7.00276 7.04630 7.18679 7.31016 7.32398 7.49066 7.65930 7.81310 7.94226 8.14313 8.54791 8.92857 9.54000 10.99852 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.032516 B = 0.013556 C = 0.010596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.904254 B = 2064.984080 C = 2641.843138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.500 4.500 8 H 0.058 0.942 9 C 0.053 3.947 10 C -0.067 4.067 11 C -0.125 4.125 12 C -0.124 4.124 13 C -0.127 4.127 14 C -0.108 4.108 15 C -0.123 4.123 16 C 0.063 3.937 17 O -0.406 6.406 18 C 0.059 3.941 19 H 0.259 0.741 20 H 0.057 0.943 21 H 0.079 0.921 22 H 0.050 0.950 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.029 0.971 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.607 -6.054 0.562 6.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.538 4.538 8 H 0.076 0.924 9 C 0.053 3.947 10 C -0.086 4.086 11 C -0.162 4.162 12 C -0.162 4.162 13 C -0.164 4.164 14 C -0.145 4.145 15 C -0.161 4.161 16 C -0.014 4.014 17 O -0.326 6.326 18 C -0.018 4.018 19 H 0.069 0.931 20 H 0.075 0.925 21 H 0.098 0.902 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.048 0.952 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.332 -6.083 0.674 6.549 hybrid contribution 0.599 1.119 -0.197 1.284 sum 2.931 -4.964 0.477 5.784 Atomic orbital electron populations 1.69969 1.05672 1.26179 1.50280 1.24966 0.94868 0.98947 0.95156 0.86580 0.80189 0.83990 0.77501 1.19871 1.21182 1.21136 1.21127 0.92906 0.89591 1.50178 0.92353 1.19365 0.91781 0.92332 0.91263 1.22043 0.95953 0.94113 0.96470 1.22561 0.98046 0.95374 1.00245 1.22145 0.97046 0.97884 0.99087 1.22192 0.98039 0.96789 0.99422 1.22302 0.99210 0.94014 0.99006 1.22790 0.95105 0.98978 0.99240 1.23191 0.97215 0.97802 0.83156 1.88819 1.49117 1.64850 1.29776 1.23604 0.84829 0.96836 0.96483 0.93081 0.92464 0.90203 0.93119 0.93053 0.92960 0.92921 0.92937 0.92299 0.91615 0.91183 0.95190 0.91134 0.93489 0.93113 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.46 8.75 55.43 0.48 -22.97 16 2 C 0.06 1.61 4.71 -17.82 -0.08 1.53 16 3 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.50 -12.83 7.48 -34.44 -0.26 -13.09 16 8 H 0.06 1.51 7.20 -52.48 -0.38 1.13 16 9 C 0.05 1.25 0.41 -154.09 -0.06 1.19 16 10 C -0.07 -1.38 2.14 -88.63 -0.19 -1.57 16 11 C -0.12 -2.33 5.37 -25.07 -0.13 -2.46 16 12 C -0.12 -1.96 6.80 -25.61 -0.17 -2.13 16 13 C -0.13 -2.00 6.80 -25.61 -0.17 -2.18 16 14 C -0.11 -2.03 5.33 -25.09 -0.13 -2.17 16 15 C -0.12 -2.86 5.35 -25.16 -0.13 -3.00 16 16 C 0.06 1.44 7.22 37.93 0.27 1.72 16 17 O -0.41 -9.73 10.33 -35.23 -0.36 -10.09 16 18 C 0.06 1.41 5.20 37.93 0.20 1.61 16 19 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 20 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 21 H 0.08 1.62 5.31 -51.93 -0.28 1.34 16 22 H 0.05 0.93 7.89 -51.93 -0.41 0.52 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.12 7.76 -51.93 -0.40 0.71 16 28 H 0.07 1.30 6.39 -51.93 -0.33 0.97 16 29 H 0.07 1.77 7.13 -51.93 -0.37 1.40 16 30 H 0.03 0.64 7.30 -51.93 -0.38 0.26 16 31 H 0.07 1.73 6.95 -51.93 -0.36 1.37 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.05 1.16 5.68 -51.93 -0.29 0.86 16 34 H 0.08 2.17 5.89 -51.93 -0.31 1.86 16 LS Contribution 251.42 15.07 3.79 3.79 Total: -1.00 -26.11 251.42 -7.17 -33.27 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -5.18 Total: 1.07 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -0.87 Total: -20.56 kcal Atomic # 7 Polarization: -23.46 SS G_CDS: 0.48 Total: -22.97 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -0.36 Total: -10.09 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -26.11 -7.17 -33.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261145887.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.418 kcal (2) G-P(sol) polarization free energy of solvation -26.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds