Wall clock time and date at job start Mon Mar 30 2020 02:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 111.00033 * 2 1 4 4 C 1.53003 * 109.47185 * 174.23477 * 3 2 1 5 5 C 1.50703 * 109.47142 * 54.23749 * 3 2 1 6 6 H 1.08001 * 120.00358 * 241.14932 * 5 3 2 7 7 C 1.37884 * 119.99751 * 61.14637 * 5 3 2 8 8 N 1.31510 * 119.99638 * 154.66922 * 7 5 3 9 9 Si 1.86803 * 119.99898 * 334.39043 * 7 5 3 10 10 H 1.48498 * 109.46843 * 180.27521 * 9 7 5 11 11 H 1.48497 * 109.47159 * 300.27716 * 9 7 5 12 12 H 1.48496 * 109.47040 * 60.27982 * 9 7 5 13 13 C 1.50701 * 109.47516 * 294.23845 * 3 2 1 14 14 N 1.30516 * 126.34733 * 125.02164 * 13 3 2 15 15 N 1.28597 * 109.67454 * 179.97438 * 14 13 3 16 16 C 1.30522 * 109.67166 * 359.97438 * 15 14 13 17 17 C 1.50704 * 126.34931 * 180.02562 * 16 15 14 18 18 N 1.35493 * 126.34471 * 304.71486 * 13 3 2 19 19 H 0.97001 * 126.97914 * 0.03297 * 18 13 3 20 20 H 1.08999 * 109.47162 * 180.02562 * 1 2 3 21 21 H 1.09008 * 109.46761 * 299.99782 * 1 2 3 22 22 H 1.08998 * 109.47100 * 59.99378 * 1 2 3 23 23 H 1.00892 * 111.00234 * 123.95840 * 2 1 3 24 24 H 1.08997 * 109.46826 * 302.50964 * 4 3 2 25 25 H 1.08998 * 109.46747 * 62.50935 * 4 3 2 26 26 H 1.09000 * 109.47160 * 182.50419 * 4 3 2 27 27 H 0.97000 * 120.00243 * 354.64132 * 8 7 5 28 28 H 1.09001 * 109.47398 * 89.97411 * 17 16 15 29 29 H 1.09003 * 109.47118 * 209.97656 * 17 16 15 30 30 H 1.09005 * 109.46734 * 329.97103 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5181 1.3332 0.1449 5 6 1.4003 2.1380 1.1529 6 1 0.8010 3.0167 0.9653 7 6 1.6208 1.7175 2.4474 8 7 1.5614 2.5804 3.4381 9 14 1.9962 -0.0791 2.7947 10 1 2.1853 -0.2720 4.2550 11 1 0.8658 -0.9205 2.3265 12 1 3.2362 -0.4730 2.0789 13 6 1.6310 2.0495 -1.2955 14 7 0.9920 3.1803 -1.4237 15 7 0.8531 3.4602 -2.6712 16 6 1.3978 2.5209 -3.3955 17 6 1.4507 2.4711 -4.9008 18 7 1.9110 1.6011 -2.5431 19 1 2.3818 0.7863 -2.7782 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 1.8306 -0.5261 0.7812 24 1 3.7828 0.8036 1.0600 25 1 3.9517 0.8174 -0.7118 26 1 3.9045 2.3515 0.1896 27 1 1.4399 3.5246 3.2523 28 1 2.3570 2.9664 -5.2491 29 1 1.4551 1.4320 -5.2300 30 1 0.5781 2.9788 -5.3119 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261153792.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:33 Heat of formation + Delta-G solvation = 88.680089 kcal Electronic energy + Delta-G solvation = -14505.348475 eV Core-core repulsion = 12144.652142 eV Total energy + Delta-G solvation = -2360.696333 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.43009 -36.97807 -33.22184 -32.23252 -31.73613 -29.88204 -27.13471 -24.67228 -23.90231 -22.75741 -21.02409 -19.67230 -17.17311 -17.06153 -15.68490 -15.28840 -14.30465 -13.87725 -13.60998 -13.03747 -12.81878 -12.74057 -12.64633 -12.19106 -11.54089 -11.41402 -10.80695 -10.77534 -10.69073 -10.34288 -10.09815 -9.78277 -9.69756 -9.11092 -8.50909 -8.31006 -7.58179 -6.58944 -4.20892 2.46547 3.12936 3.20426 3.40374 3.43533 3.60282 4.29573 4.75126 4.91982 5.18088 5.21284 5.51458 5.53683 5.81180 6.04733 6.15549 6.24408 6.27980 6.35963 6.46518 6.58341 6.85815 6.88042 6.96297 7.54586 7.70955 7.96034 8.05444 8.33159 8.93653 9.42252 9.55946 10.74298 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.048148 B = 0.011395 C = 0.010670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.400370 B = 2456.727977 C = 2623.668882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.700 5.700 3 C 0.281 3.719 4 C -0.140 4.140 5 C -0.616 4.616 6 H 0.084 0.916 7 C 0.042 3.958 8 N -0.880 5.880 9 Si 1.022 2.978 10 H -0.289 1.289 11 H -0.282 1.282 12 H -0.271 1.271 13 C 0.246 3.754 14 N -0.285 5.285 15 N -0.305 5.305 16 C 0.137 3.863 17 C -0.058 4.058 18 N -0.579 5.579 19 H 0.423 0.577 20 H 0.045 0.955 21 H 0.049 0.951 22 H 0.047 0.953 23 H 0.322 0.678 24 H 0.066 0.934 25 H 0.030 0.970 26 H 0.059 0.941 27 H 0.277 0.723 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.675 -6.443 -11.384 13.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.339 5.339 3 C 0.190 3.810 4 C -0.199 4.199 5 C -0.655 4.655 6 H 0.102 0.898 7 C -0.166 4.166 8 N -0.511 5.511 9 Si 0.853 3.147 10 H -0.216 1.216 11 H -0.209 1.209 12 H -0.199 1.199 13 C -0.024 4.024 14 N -0.124 5.124 15 N -0.147 5.147 16 C -0.131 4.131 17 C -0.117 4.117 18 N -0.191 5.191 19 H 0.261 0.739 20 H 0.063 0.937 21 H 0.068 0.932 22 H 0.066 0.934 23 H 0.147 0.853 24 H 0.084 0.916 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.168 -6.136 -10.413 12.279 hybrid contribution 0.450 -0.298 -0.810 0.973 sum 2.617 -6.433 -11.222 13.198 Atomic orbital electron populations 1.21931 0.88455 0.99075 1.01636 1.61251 1.08457 1.15971 1.48271 1.17462 0.92330 0.85258 0.85945 1.22184 0.95536 1.01592 1.00599 1.22278 1.37146 1.15883 0.90203 0.89825 1.25597 0.93737 1.04941 0.92351 1.70763 1.41447 1.04443 1.34451 0.84658 0.76974 0.76840 0.76205 1.21580 1.20946 1.19912 1.25127 0.97179 0.93386 0.86681 1.74344 1.16809 1.12631 1.08607 1.74235 1.19671 1.22577 0.98254 1.24647 1.02171 0.90366 0.95957 1.20052 1.04005 1.02842 0.84786 1.43976 1.45789 1.22039 1.07306 0.73885 0.93655 0.93222 0.93400 0.85300 0.91560 0.95064 0.92222 0.91291 0.90418 0.91067 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 9.01 60.07 0.54 1.35 16 2 N -0.70 -14.80 6.24 -109.55 -0.68 -15.48 16 3 C 0.28 6.49 0.64 -133.90 -0.09 6.40 16 4 C -0.14 -2.96 8.37 37.16 0.31 -2.65 16 5 C -0.62 -16.80 6.76 -34.44 -0.23 -17.03 16 6 H 0.08 2.60 7.20 -52.49 -0.38 2.22 16 7 C 0.04 1.17 5.14 -17.82 -0.09 1.08 16 8 N -0.88 -26.05 13.69 55.43 0.76 -25.29 16 9 Si 1.02 23.35 22.89 -169.99 -3.89 19.46 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.04 6.24 56.52 0.35 -5.69 16 12 H -0.27 -5.59 5.47 56.52 0.31 -5.28 16 13 C 0.25 5.49 5.55 -154.99 -0.86 4.63 16 14 N -0.28 -7.09 11.04 32.80 0.36 -6.73 16 15 N -0.31 -6.73 12.21 32.80 0.40 -6.33 16 16 C 0.14 2.38 8.30 -154.98 -1.29 1.10 16 17 C -0.06 -0.63 10.51 36.01 0.38 -0.26 16 18 N -0.58 -10.21 6.20 -7.60 -0.05 -10.25 16 19 H 0.42 5.98 8.96 -40.82 -0.37 5.61 16 20 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 21 H 0.05 1.16 6.35 -51.92 -0.33 0.83 16 22 H 0.05 1.02 7.27 -51.93 -0.38 0.64 16 23 H 0.32 6.78 3.41 -39.30 -0.13 6.65 16 24 H 0.07 1.41 4.64 -51.93 -0.24 1.17 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.28 8.28 8.73 -40.82 -0.36 7.92 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 240.79 15.07 3.63 3.63 Total: -1.00 -31.87 240.79 -4.45 -36.33 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -3.66 Total: 10.06 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -1.33 Total: -5.39 kcal Atomic # 7 Polarization: -64.88 SS G_CDS: 0.79 Total: -64.09 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -3.89 Total: 19.46 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -31.87 -4.45 -36.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261153792.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.005 kcal (2) G-P(sol) polarization free energy of solvation -31.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds