Wall clock time and date at job start Mon Mar 30 2020 02:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.47038 * 2 1 4 4 C 1.46903 * 110.99698 * 185.16852 * 3 2 1 5 5 H 1.09000 * 109.47432 * 34.59705 * 4 3 2 6 6 C 1.50702 * 109.47229 * 154.59791 * 4 3 2 7 7 H 1.07999 * 120.00513 * 119.99138 * 6 4 3 8 8 C 1.37883 * 119.99853 * 300.00037 * 6 4 3 9 9 N 1.31513 * 120.00056 * 359.97438 * 8 6 4 10 10 Si 1.86801 * 120.00022 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46859 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.46949 * 119.99686 * 10 8 6 13 13 H 1.48496 * 109.47035 * 239.99819 * 10 8 6 14 14 C 1.50701 * 109.46980 * 274.59433 * 4 3 2 15 15 C 1.41377 * 126.80124 * 154.54576 * 14 4 3 16 16 C 1.35450 * 103.98323 * 180.02562 * 15 14 4 17 17 C 1.50705 * 126.77406 * 180.26289 * 16 15 14 18 18 O 1.34040 * 106.45188 * 359.97438 * 16 15 14 19 19 N 1.20927 * 111.56166 * 359.97438 * 18 16 15 20 20 H 1.09002 * 109.46634 * 300.00174 * 1 2 3 21 21 H 1.08997 * 109.47163 * 59.99634 * 1 2 3 22 22 H 1.08993 * 109.47209 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46925 * 240.00268 * 2 1 3 24 24 H 1.08994 * 109.47464 * 119.99940 * 2 1 3 25 25 H 1.00893 * 111.00395 * 61.21414 * 3 2 1 26 26 H 0.96999 * 120.00061 * 180.02562 * 9 8 6 27 27 H 1.08002 * 128.00928 * 0.05238 * 15 14 4 28 28 H 1.08999 * 109.47124 * 179.70742 * 17 16 15 29 29 H 1.08998 * 109.47056 * 299.70388 * 17 16 15 30 30 H 1.08995 * 109.47053 * 59.70546 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4829 1.4260 -0.1236 5 1 3.8167 0.6084 -0.7625 6 6 3.8991 2.7407 -0.7314 7 1 4.5499 3.4067 -0.1843 8 6 3.4489 3.0934 -1.9860 9 7 2.6566 2.2823 -2.6524 10 14 3.9641 4.7233 -2.7392 11 1 4.8511 5.4472 -1.7933 12 1 4.6924 4.4736 -4.0089 13 1 2.7581 5.5450 -3.0136 14 6 4.1064 1.2838 1.2410 15 6 5.3961 0.7848 1.5351 16 6 5.4766 0.8609 2.8850 17 6 6.6492 0.4607 3.7429 18 8 4.3098 1.3682 3.3069 19 7 3.5644 1.5968 2.3825 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.7126 1.8771 0.8255 26 1 2.3402 2.5303 -3.5352 27 1 6.1442 0.4264 0.8434 28 1 6.4124 0.6451 4.7908 29 1 6.8597 -0.5990 3.5991 30 1 7.5235 1.0466 3.4594 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261163541.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:23 Heat of formation + Delta-G solvation = 55.934054 kcal Electronic energy + Delta-G solvation = -13942.379559 eV Core-core repulsion = 11547.970500 eV Total energy + Delta-G solvation = -2394.409059 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.13715 -36.13154 -33.34345 -32.59792 -32.20382 -29.27090 -27.37450 -25.97927 -23.18949 -22.07505 -21.10511 -18.89799 -17.03633 -16.62027 -16.24535 -14.73029 -14.32089 -14.04156 -13.42587 -13.19024 -13.10016 -12.93995 -12.48835 -12.01233 -11.58341 -11.24033 -11.02210 -10.86515 -10.72273 -10.46381 -10.17907 -9.97792 -9.59798 -8.88090 -8.59228 -8.39980 -6.93191 -5.89873 -4.02934 2.10784 3.13793 3.33541 3.42016 3.46675 3.73931 4.49001 4.99270 5.13898 5.32252 5.49716 5.51288 5.71716 5.80194 5.91816 5.93898 6.15766 6.20522 6.36631 6.38985 6.52714 6.85793 6.87255 6.96649 7.18382 7.91552 8.14278 8.56560 8.79641 9.05831 9.15866 9.64295 11.15199 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.024601 B = 0.011618 C = 0.008517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.908236 B = 2409.548362 C = 3286.704746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.060 3.940 3 N -0.644 5.644 4 C 0.290 3.710 5 H 0.055 0.945 6 C -0.521 4.521 7 H 0.053 0.947 8 C 0.087 3.913 9 N -0.848 5.848 10 Si 0.889 3.111 11 H -0.275 1.275 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.034 3.966 15 C -0.227 4.227 16 C -0.064 4.064 17 C -0.065 4.065 18 O 0.078 5.922 19 N -0.382 5.382 20 H 0.042 0.958 21 H 0.062 0.938 22 H 0.042 0.958 23 H 0.064 0.936 24 H -0.003 1.003 25 H 0.323 0.677 26 H 0.256 0.744 27 H 0.163 0.837 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.495 -4.925 7.891 10.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.070 4.070 3 N -0.273 5.273 4 C 0.181 3.819 5 H 0.073 0.927 6 C -0.561 4.561 7 H 0.071 0.929 8 C -0.120 4.120 9 N -0.483 5.483 10 Si 0.717 3.283 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.209 1.209 14 C -0.127 4.127 15 C -0.248 4.248 16 C -0.128 4.128 17 C -0.123 4.123 18 O 0.017 5.983 19 N -0.091 5.091 20 H 0.061 0.939 21 H 0.081 0.919 22 H 0.061 0.939 23 H 0.082 0.918 24 H 0.015 0.985 25 H 0.140 0.860 26 H 0.066 0.934 27 H 0.180 0.820 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.082 -4.377 7.418 9.148 hybrid contribution 1.202 0.315 -0.032 1.243 sum 4.284 -4.062 7.386 9.456 Atomic orbital electron populations 1.21689 0.96608 0.99738 1.01793 1.21814 0.94550 0.92488 0.98182 1.60923 1.11885 1.10806 1.43650 1.17963 0.83299 0.98877 0.81779 0.92740 1.20749 1.30840 1.03342 1.01146 0.92864 1.24873 0.94069 0.96421 0.96642 1.70066 1.31028 1.35450 1.11764 0.86616 0.78358 0.84378 0.78996 1.19939 1.21068 1.20949 1.25639 0.93138 0.95525 0.98386 1.22452 0.99580 1.08354 0.94452 1.24357 0.90939 1.02520 0.94942 1.20178 0.91838 1.01930 0.98326 1.84758 1.20414 1.60985 1.32174 1.73656 1.16836 1.21645 0.96959 0.93900 0.91851 0.93912 0.91781 0.98484 0.85954 0.93375 0.81972 0.90627 0.89959 0.89856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 10.22 37.16 0.38 -2.24 16 2 C 0.06 1.30 6.23 -3.82 -0.02 1.27 16 3 N -0.64 -16.03 5.52 -109.19 -0.60 -16.64 16 4 C 0.29 7.45 2.36 -70.01 -0.17 7.28 16 5 H 0.05 1.48 7.71 -51.93 -0.40 1.08 16 6 C -0.52 -14.61 8.75 -34.44 -0.30 -14.91 16 7 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 8 C 0.09 2.43 5.39 -17.82 -0.10 2.33 16 9 N -0.85 -24.37 12.77 55.43 0.71 -23.66 16 10 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 C 0.03 0.78 6.02 -82.10 -0.49 0.29 16 15 C -0.23 -4.35 11.06 -39.38 -0.44 -4.78 16 16 C -0.06 -1.06 7.49 -35.30 -0.26 -1.32 16 17 C -0.07 -0.69 10.45 36.01 0.38 -0.31 16 18 O 0.08 1.52 11.20 17.17 0.19 1.72 16 19 N -0.38 -8.59 11.23 33.42 0.38 -8.22 16 20 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 22 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.06 1.44 7.93 -51.93 -0.41 1.03 16 24 H 0.00 -0.06 8.10 -51.93 -0.42 -0.48 16 25 H 0.32 8.07 7.89 -39.30 -0.31 7.76 16 26 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.16 2.74 8.06 -52.49 -0.42 2.32 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 264.11 15.07 3.98 3.98 Total: -1.00 -30.52 264.11 -5.44 -35.95 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -4.04 Total: 2.77 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -1.02 Total: -12.40 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 0.48 Total: -48.51 kcal Atomic # 8 Polarization: 1.52 SS G_CDS: 0.19 Total: 1.72 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.52 -5.44 -35.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261163541.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.887 kcal (2) G-P(sol) polarization free energy of solvation -30.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds