Wall clock time and date at job start Mon Mar 30 2020 02:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.47038 * 2 1 4 4 C 1.46903 * 110.99698 * 185.16852 * 3 2 1 5 5 H 1.09000 * 109.47432 * 34.59705 * 4 3 2 6 6 C 1.50702 * 109.47229 * 154.59791 * 4 3 2 7 7 H 1.07999 * 120.00513 * 119.99138 * 6 4 3 8 8 C 1.37883 * 119.99853 * 300.00037 * 6 4 3 9 9 N 1.31513 * 120.00056 * 359.97438 * 8 6 4 10 10 Si 1.86801 * 120.00022 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46859 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.46949 * 119.99686 * 10 8 6 13 13 H 1.48496 * 109.47035 * 239.99819 * 10 8 6 14 14 C 1.50701 * 109.46980 * 274.59433 * 4 3 2 15 15 C 1.41377 * 126.80124 * 154.54576 * 14 4 3 16 16 C 1.35450 * 103.98323 * 180.02562 * 15 14 4 17 17 C 1.50705 * 126.77406 * 180.26289 * 16 15 14 18 18 O 1.34040 * 106.45188 * 359.97438 * 16 15 14 19 19 N 1.20927 * 111.56166 * 359.97438 * 18 16 15 20 20 H 1.09002 * 109.46634 * 300.00174 * 1 2 3 21 21 H 1.08997 * 109.47163 * 59.99634 * 1 2 3 22 22 H 1.08993 * 109.47209 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46925 * 240.00268 * 2 1 3 24 24 H 1.08994 * 109.47464 * 119.99940 * 2 1 3 25 25 H 1.00893 * 111.00395 * 61.21414 * 3 2 1 26 26 H 0.96999 * 120.00061 * 180.02562 * 9 8 6 27 27 H 1.08002 * 128.00928 * 0.05238 * 15 14 4 28 28 H 1.08999 * 109.47124 * 179.70742 * 17 16 15 29 29 H 1.08998 * 109.47056 * 299.70388 * 17 16 15 30 30 H 1.08995 * 109.47053 * 59.70546 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4829 1.4260 -0.1236 5 1 3.8167 0.6084 -0.7625 6 6 3.8991 2.7407 -0.7314 7 1 4.5499 3.4067 -0.1843 8 6 3.4489 3.0934 -1.9860 9 7 2.6566 2.2823 -2.6524 10 14 3.9641 4.7233 -2.7392 11 1 4.8511 5.4472 -1.7933 12 1 4.6924 4.4736 -4.0089 13 1 2.7581 5.5450 -3.0136 14 6 4.1064 1.2838 1.2410 15 6 5.3961 0.7848 1.5351 16 6 5.4766 0.8609 2.8850 17 6 6.6492 0.4607 3.7429 18 8 4.3098 1.3682 3.3069 19 7 3.5644 1.5968 2.3825 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.7126 1.8771 0.8255 26 1 2.3402 2.5303 -3.5352 27 1 6.1442 0.4264 0.8434 28 1 6.4124 0.6451 4.7908 29 1 6.8597 -0.5990 3.5991 30 1 7.5235 1.0466 3.4594 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261163541.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:23 Heat of formation + Delta-G solvation = 35.213358 kcal Electronic energy + Delta-G solvation = -13943.278076 eV Core-core repulsion = 11547.970500 eV Total energy + Delta-G solvation = -2395.307576 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -45.73876 -37.99729 -34.83981 -34.43017 -33.88938 -31.06329 -28.62346 -27.88514 -25.04601 -23.73349 -22.83990 -20.53852 -18.81044 -18.22425 -18.11894 -16.61016 -16.21769 -15.70507 -14.94950 -14.86676 -14.41033 -14.16942 -13.91087 -13.49854 -13.16165 -13.03129 -12.83751 -12.70029 -12.50681 -12.13641 -11.92182 -11.79973 -11.56284 -10.64796 -10.50803 -10.10438 -8.84648 -8.02082 -6.23006 0.68992 1.40267 1.41943 1.48699 1.56053 2.42798 2.46715 3.14181 3.51765 3.76363 3.97194 4.25881 4.31743 4.50360 4.54267 4.65134 4.73390 4.77708 4.88878 4.93764 5.10099 5.16890 5.21013 5.34648 5.38651 5.71863 6.09301 6.52936 6.86802 7.01687 7.47582 7.57100 9.01926 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.024601 B = 0.011618 C = 0.008517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.908236 B = 2409.548362 C = 3286.704746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.064 3.936 3 N -0.658 5.658 4 C 0.294 3.706 5 H 0.029 0.971 6 C -0.539 4.539 7 H 0.039 0.961 8 C 0.042 3.958 9 N -0.875 5.875 10 Si 0.954 3.046 11 H -0.275 1.275 12 H -0.274 1.274 13 H -0.282 1.282 14 C 0.004 3.996 15 C -0.252 4.252 16 C -0.035 4.035 17 C -0.064 4.064 18 O 0.081 5.919 19 N -0.406 5.406 20 H 0.049 0.951 21 H 0.048 0.952 22 H 0.074 0.926 23 H 0.048 0.952 24 H 0.000 1.000 25 H 0.319 0.681 26 H 0.259 0.741 27 H 0.179 0.821 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.519 -5.111 9.058 11.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.066 4.066 3 N -0.287 5.287 4 C 0.185 3.815 5 H 0.046 0.954 6 C -0.578 4.578 7 H 0.057 0.943 8 C -0.162 4.162 9 N -0.511 5.511 10 Si 0.779 3.221 11 H -0.199 1.199 12 H -0.199 1.199 13 H -0.208 1.208 14 C -0.156 4.156 15 C -0.274 4.274 16 C -0.099 4.099 17 C -0.121 4.121 18 O 0.018 5.982 19 N -0.115 5.115 20 H 0.069 0.931 21 H 0.068 0.932 22 H 0.093 0.907 23 H 0.067 0.933 24 H 0.018 0.982 25 H 0.136 0.864 26 H 0.068 0.932 27 H 0.196 0.804 28 H 0.115 0.885 29 H 0.126 0.874 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.106 -4.569 8.579 10.552 hybrid contribution 0.947 0.312 -0.298 1.041 sum 5.053 -4.257 8.281 10.594 Atomic orbital electron populations 1.21605 0.94009 1.01738 1.01420 1.21800 0.96624 0.90721 0.97472 1.60814 1.11732 1.12689 1.43506 1.17576 0.83989 0.96832 0.83120 0.95360 1.20955 1.30982 1.04204 1.01695 0.94291 1.25588 0.94056 0.99633 0.96961 1.70172 1.31846 1.36985 1.12053 0.85612 0.77929 0.80244 0.78301 1.19940 1.19908 1.20785 1.25355 0.95060 0.97683 0.97533 1.22677 0.98731 1.09769 0.96192 1.25329 0.90752 0.98997 0.94823 1.20529 0.89490 1.03704 0.98337 1.84704 1.21390 1.60714 1.31351 1.73623 1.18113 1.22587 0.97145 0.93143 0.93248 0.90722 0.93323 0.98171 0.86397 0.93240 0.80404 0.88500 0.87359 0.87755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.76 10.22 71.98 0.74 -4.02 16 2 C 0.06 2.80 6.23 86.30 0.54 3.34 16 3 N -0.66 -33.74 5.52 -499.36 -2.76 -36.49 16 4 C 0.29 15.63 2.36 43.42 0.10 15.74 16 5 H 0.03 1.62 7.71 -2.39 -0.02 1.61 16 6 C -0.54 -31.02 8.75 25.60 0.22 -30.80 16 7 H 0.04 2.29 7.74 -2.91 -0.02 2.27 16 8 C 0.04 2.38 5.39 84.66 0.46 2.84 16 9 N -0.88 -51.20 12.77 21.45 0.27 -50.93 16 10 Si 0.95 44.66 29.54 68.60 2.03 46.69 16 11 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 13 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 14 C 0.00 0.17 6.02 43.58 0.26 0.43 16 15 C -0.25 -9.50 11.06 22.40 0.25 -9.25 16 16 C -0.03 -1.08 7.49 25.04 0.19 -0.89 16 17 C -0.06 -1.07 10.45 71.24 0.74 -0.32 16 18 O 0.08 3.06 11.20 71.63 0.80 3.86 16 19 N -0.41 -18.34 11.23 -49.55 -0.56 -18.89 16 20 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 21 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 22 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 23 H 0.05 2.26 7.93 -2.39 -0.02 2.24 16 24 H 0.00 0.01 8.10 -2.39 -0.02 -0.01 16 25 H 0.32 16.40 7.89 -89.70 -0.71 15.69 16 26 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 27 H 0.18 5.91 8.06 -2.91 -0.02 5.89 16 28 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -67.24 264.11 3.71 -63.53 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.42 Total: 15.19 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: 3.50 Total: -22.96 kcal Atomic # 7 Polarization: -103.28 SS G_CDS: -3.04 Total: -106.32 kcal Atomic # 8 Polarization: 3.06 SS G_CDS: 0.80 Total: 3.86 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -67.24 3.71 -63.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261163541.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.745 kcal (2) G-P(sol) polarization free energy of solvation -67.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds