Wall clock time and date at job start Mon Mar 30 2020 02:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47278 * 2 1 4 4 C 1.34945 * 126.03790 * 124.99797 * 3 2 1 5 5 C 1.35319 * 107.74770 * 179.97438 * 4 3 2 6 6 C 1.50697 * 126.04107 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.47088 * 340.00283 * 6 5 4 8 8 O 1.42898 * 109.47392 * 220.00525 * 6 5 4 9 9 C 1.52998 * 109.47038 * 100.00504 * 6 5 4 10 10 C 1.50696 * 109.47005 * 185.00051 * 9 6 5 11 11 H 1.08001 * 120.00458 * 0.02562 * 10 9 6 12 12 C 1.37887 * 119.99980 * 180.02562 * 10 9 6 13 13 N 1.31512 * 119.99566 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99896 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47281 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.46959 * 120.00011 * 14 12 10 17 17 H 1.48497 * 109.47120 * 239.99870 * 14 12 10 18 18 C 1.39877 * 107.91756 * 0.02562 * 5 4 3 19 19 N 1.30833 * 108.20100 * 359.97438 * 18 5 4 20 20 H 1.09003 * 109.47009 * 299.99708 * 1 2 3 21 21 H 1.09001 * 109.47162 * 59.99838 * 1 2 3 22 22 H 1.09001 * 109.47076 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47009 * 240.00292 * 2 1 3 24 24 H 1.09001 * 109.47162 * 120.00162 * 2 1 3 25 25 H 1.07994 * 126.12681 * 359.97438 * 4 3 2 26 26 H 0.96705 * 113.99759 * 300.00410 * 8 6 5 27 27 H 1.09007 * 109.46975 * 304.99881 * 9 6 5 28 28 H 1.08993 * 109.47467 * 65.00036 * 9 6 5 29 29 H 0.97001 * 119.99711 * 180.02562 * 13 12 10 30 30 H 1.07995 * 125.89269 * 180.02562 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8731 1.9211 0.8939 5 6 3.0722 3.2134 0.5457 6 6 3.9552 4.1997 1.2657 7 1 4.1326 3.8529 2.2837 8 8 3.3130 5.4758 1.3024 9 6 5.2903 4.3218 0.5285 10 6 6.2181 5.2126 1.3137 11 1 5.8886 5.6479 2.2456 12 6 7.4877 5.4721 0.8425 13 7 7.8890 4.9416 -0.2920 14 14 8.6379 6.5758 1.8162 15 1 7.9521 7.0412 3.0484 16 1 9.8582 5.8149 2.1867 17 1 9.0180 7.7481 0.9878 18 6 2.3126 3.4723 -0.6000 19 7 1.6807 2.3747 -0.9281 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.3184 1.4128 1.7362 26 1 3.1241 5.8462 0.4293 27 1 5.7385 3.3338 0.4226 28 1 5.1223 4.7522 -0.4586 29 1 8.7823 5.1238 -0.6234 30 1 2.2580 4.4152 -1.1237 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261168826.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:21 Heat of formation + Delta-G solvation = 14.697685 kcal Electronic energy + Delta-G solvation = -13503.690089 eV Core-core repulsion = 11107.492887 eV Total energy + Delta-G solvation = -2396.197202 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.85728 -36.51115 -34.14426 -32.78016 -30.60701 -29.80049 -28.12849 -24.52035 -23.58590 -21.44372 -20.48176 -19.50046 -17.13036 -16.19307 -15.29875 -15.16702 -14.38272 -14.26688 -13.97592 -13.62823 -13.17516 -12.44042 -12.27374 -12.21258 -12.07810 -11.55935 -11.07737 -10.80134 -10.74615 -10.46712 -10.14993 -10.01382 -9.08389 -9.02640 -8.90353 -8.33708 -7.81326 -5.95280 -3.96379 2.23284 2.76826 3.24291 3.35248 3.42769 3.48832 4.50884 4.55118 4.88415 5.05270 5.16994 5.30143 5.38524 5.44904 5.54973 5.65592 5.87792 5.97791 6.02276 6.26578 6.73418 6.82896 7.03334 7.34422 7.63388 7.75334 8.02291 8.04406 8.44088 8.63136 9.11305 9.67028 11.16019 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.062766 B = 0.006446 C = 0.006260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.994047 B = 4342.678758 C = 4471.501846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.133 3.867 3 N -0.380 5.380 4 C 0.049 3.951 5 C -0.243 4.243 6 C 0.182 3.818 7 H 0.088 0.912 8 O -0.557 6.557 9 C 0.002 3.998 10 C -0.509 4.509 11 H 0.061 0.939 12 C 0.054 3.946 13 N -0.899 5.899 14 Si 0.892 3.108 15 H -0.272 1.272 16 H -0.286 1.286 17 H -0.285 1.285 18 C 0.056 3.944 19 N -0.304 5.304 20 H 0.059 0.941 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.170 0.830 26 H 0.364 0.636 27 H 0.023 0.977 28 H 0.019 0.981 29 H 0.259 0.741 30 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.607 -8.567 0.988 14.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.012 3.988 3 N -0.165 5.165 4 C -0.096 4.096 5 C -0.255 4.255 6 C 0.122 3.878 7 H 0.106 0.894 8 O -0.361 6.361 9 C -0.035 4.035 10 C -0.547 4.547 11 H 0.079 0.921 12 C -0.146 4.146 13 N -0.539 5.539 14 Si 0.720 3.280 15 H -0.196 1.196 16 H -0.212 1.212 17 H -0.211 1.211 18 C -0.130 4.130 19 N -0.125 5.125 20 H 0.078 0.922 21 H 0.088 0.912 22 H 0.089 0.911 23 H 0.098 0.902 24 H 0.110 0.890 25 H 0.187 0.813 26 H 0.209 0.791 27 H 0.041 0.959 28 H 0.037 0.963 29 H 0.068 0.932 30 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -12.265 -9.384 0.711 15.460 hybrid contribution 1.386 0.880 0.340 1.677 sum -10.878 -8.505 1.050 13.848 Atomic orbital electron populations 1.22045 0.94199 1.02386 1.03510 1.21566 0.95696 0.78182 1.03386 1.48559 1.36327 1.09822 1.21764 1.22247 0.95921 0.94830 0.96574 1.21324 1.06838 0.96367 1.00924 1.20404 0.90005 0.79282 0.98152 0.89398 1.86483 1.81466 1.34991 1.33181 1.19729 0.90394 0.97641 0.95749 1.21253 0.97562 1.28620 1.07291 0.92122 1.25025 0.98250 0.96262 0.95103 1.69988 1.18785 1.44807 1.20285 0.86529 0.80713 0.80477 0.80258 1.19636 1.21206 1.21112 1.23619 0.95963 0.97270 0.96163 1.77177 1.24526 0.97027 1.13811 0.92182 0.91208 0.91087 0.90227 0.88973 0.81281 0.79051 0.95921 0.96263 0.93185 0.80438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 10.10 37.16 0.38 -1.14 16 2 C 0.13 1.39 7.23 -4.04 -0.03 1.36 16 3 N -0.38 -5.80 3.68 -61.37 -0.23 -6.02 16 4 C 0.05 0.79 11.36 -17.22 -0.20 0.59 16 5 C -0.24 -4.51 5.11 -105.05 -0.54 -5.04 16 6 C 0.18 3.83 3.36 -27.89 -0.09 3.73 16 7 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 8 O -0.56 -11.59 13.01 -35.23 -0.46 -12.05 16 9 C 0.00 0.06 4.64 -27.89 -0.13 -0.07 16 10 C -0.51 -14.44 8.88 -34.44 -0.31 -14.74 16 11 H 0.06 1.72 7.74 -52.49 -0.41 1.31 16 12 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 13 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 14 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 15 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 18 C 0.06 0.98 11.44 -17.36 -0.20 0.78 16 19 N -0.30 -5.29 12.42 30.62 0.38 -4.90 16 20 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.09 0.73 8.07 -51.93 -0.42 0.31 16 25 H 0.17 2.21 8.06 -52.49 -0.42 1.79 16 26 H 0.36 6.40 8.35 45.56 0.38 6.78 16 27 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.18 2.69 7.76 -52.49 -0.41 2.28 16 LS Contribution 266.11 15.07 4.01 4.01 Total: -1.00 -33.50 266.11 -5.16 -38.66 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -3.37 Total: 2.89 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -1.21 Total: -13.06 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.89 Total: -37.35 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -0.46 Total: -12.05 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -33.50 -5.16 -38.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261168826.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.360 kcal (2) G-P(sol) polarization free energy of solvation -33.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds