Wall clock time and date at job start Mon Mar 30 2020 02:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47278 * 2 1 4 4 C 1.34945 * 126.03790 * 124.99797 * 3 2 1 5 5 C 1.35319 * 107.74770 * 179.97438 * 4 3 2 6 6 C 1.50697 * 126.04107 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.47088 * 340.00283 * 6 5 4 8 8 O 1.42898 * 109.47392 * 220.00525 * 6 5 4 9 9 C 1.52998 * 109.47038 * 100.00504 * 6 5 4 10 10 C 1.50696 * 109.47005 * 185.00051 * 9 6 5 11 11 H 1.08001 * 120.00458 * 0.02562 * 10 9 6 12 12 C 1.37887 * 119.99980 * 180.02562 * 10 9 6 13 13 N 1.31512 * 119.99566 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99896 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47281 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.46959 * 120.00011 * 14 12 10 17 17 H 1.48497 * 109.47120 * 239.99870 * 14 12 10 18 18 C 1.39877 * 107.91756 * 0.02562 * 5 4 3 19 19 N 1.30833 * 108.20100 * 359.97438 * 18 5 4 20 20 H 1.09003 * 109.47009 * 299.99708 * 1 2 3 21 21 H 1.09001 * 109.47162 * 59.99838 * 1 2 3 22 22 H 1.09001 * 109.47076 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47009 * 240.00292 * 2 1 3 24 24 H 1.09001 * 109.47162 * 120.00162 * 2 1 3 25 25 H 1.07994 * 126.12681 * 359.97438 * 4 3 2 26 26 H 0.96705 * 113.99759 * 300.00410 * 8 6 5 27 27 H 1.09007 * 109.46975 * 304.99881 * 9 6 5 28 28 H 1.08993 * 109.47467 * 65.00036 * 9 6 5 29 29 H 0.97001 * 119.99711 * 180.02562 * 13 12 10 30 30 H 1.07995 * 125.89269 * 180.02562 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8731 1.9211 0.8939 5 6 3.0722 3.2134 0.5457 6 6 3.9552 4.1997 1.2657 7 1 4.1326 3.8529 2.2837 8 8 3.3130 5.4758 1.3024 9 6 5.2903 4.3218 0.5285 10 6 6.2181 5.2126 1.3137 11 1 5.8886 5.6479 2.2456 12 6 7.4877 5.4721 0.8425 13 7 7.8890 4.9416 -0.2920 14 14 8.6379 6.5758 1.8162 15 1 7.9521 7.0412 3.0484 16 1 9.8582 5.8149 2.1867 17 1 9.0180 7.7481 0.9878 18 6 2.3126 3.4723 -0.6000 19 7 1.6807 2.3747 -0.9281 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.3184 1.4128 1.7362 26 1 3.1241 5.8462 0.4293 27 1 5.7385 3.3338 0.4226 28 1 5.1223 4.7522 -0.4586 29 1 8.7823 5.1238 -0.6234 30 1 2.2580 4.4152 -1.1237 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261168826.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:20 Heat of formation + Delta-G solvation = -9.535958 kcal Electronic energy + Delta-G solvation = -13504.740939 eV Core-core repulsion = 11107.492887 eV Total energy + Delta-G solvation = -2397.248052 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.13553 -38.15537 -35.17268 -34.90952 -32.21127 -31.03899 -29.78466 -26.32505 -24.64930 -23.27425 -21.68183 -20.88937 -18.72812 -17.97348 -16.93397 -16.30180 -16.19280 -15.83954 -15.23841 -14.91662 -14.61991 -14.27165 -13.62453 -13.34018 -13.04353 -12.94485 -12.71331 -12.67451 -12.43125 -12.22220 -11.95407 -11.55394 -11.10166 -10.62815 -10.54119 -10.30376 -9.21711 -8.15280 -6.24673 0.97283 1.42265 1.43272 1.56989 1.69273 1.86102 2.45573 3.17493 3.58550 3.92296 4.02159 4.10672 4.17468 4.37865 4.45941 4.52993 4.74483 4.83184 4.92459 5.02832 5.17435 5.24016 5.47525 5.66696 5.76596 5.84394 6.19563 6.28875 6.74511 6.90262 7.07355 7.43636 8.96095 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.062766 B = 0.006446 C = 0.006260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.994047 B = 4342.678758 C = 4471.501846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.119 3.881 3 N -0.374 5.374 4 C 0.060 3.940 5 C -0.277 4.277 6 C 0.199 3.801 7 H 0.088 0.912 8 O -0.567 6.567 9 C 0.011 3.989 10 C -0.526 4.526 11 H 0.058 0.942 12 C 0.000 4.000 13 N -0.935 5.935 14 Si 0.962 3.038 15 H -0.264 1.264 16 H -0.278 1.278 17 H -0.280 1.280 18 C 0.045 3.955 19 N -0.323 5.323 20 H 0.052 0.948 21 H 0.049 0.951 22 H 0.102 0.898 23 H 0.088 0.912 24 H 0.125 0.875 25 H 0.201 0.799 26 H 0.376 0.624 27 H -0.002 1.002 28 H -0.004 1.004 29 H 0.262 0.738 30 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.973 -9.376 2.028 15.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.000 4.000 3 N -0.158 5.158 4 C -0.087 4.087 5 C -0.288 4.288 6 C 0.139 3.861 7 H 0.105 0.895 8 O -0.372 6.372 9 C -0.026 4.026 10 C -0.564 4.564 11 H 0.076 0.924 12 C -0.197 4.197 13 N -0.576 5.576 14 Si 0.787 3.213 15 H -0.188 1.188 16 H -0.204 1.204 17 H -0.206 1.206 18 C -0.140 4.140 19 N -0.145 5.145 20 H 0.071 0.929 21 H 0.068 0.932 22 H 0.121 0.879 23 H 0.107 0.893 24 H 0.143 0.857 25 H 0.218 0.782 26 H 0.224 0.776 27 H 0.016 0.984 28 H 0.014 0.986 29 H 0.070 0.930 30 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -12.663 -10.207 1.737 16.357 hybrid contribution 1.451 1.041 -0.007 1.785 sum -11.212 -9.166 1.730 14.585 Atomic orbital electron populations 1.22000 0.93237 1.04057 1.02139 1.22079 0.96557 0.75881 1.05496 1.48986 1.35322 1.10940 1.20537 1.22699 0.94892 0.94163 0.96910 1.21109 1.08367 0.97184 1.02168 1.19967 0.88324 0.80189 0.97606 0.89455 1.86431 1.81160 1.35209 1.34430 1.19594 0.92671 0.95438 0.94910 1.21604 0.98420 1.28963 1.07404 0.92403 1.25913 1.00045 0.97708 0.96081 1.70111 1.19407 1.46220 1.21910 0.85436 0.78465 0.78463 0.78895 1.18820 1.20423 1.20572 1.23863 0.95942 0.98080 0.96164 1.77128 1.25067 0.97476 1.14873 0.92876 0.93182 0.87890 0.89338 0.85670 0.78186 0.77637 0.98393 0.98594 0.92959 0.79311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 10.10 71.98 0.73 -1.79 16 2 C 0.12 2.15 7.23 86.38 0.62 2.78 16 3 N -0.37 -10.72 3.68 -348.07 -1.28 -12.00 16 4 C 0.06 1.83 11.36 83.54 0.95 2.78 16 5 C -0.28 -10.14 5.11 -20.14 -0.10 -10.24 16 6 C 0.20 8.42 3.36 29.85 0.10 8.52 16 7 H 0.09 3.65 8.14 -2.39 -0.02 3.63 16 8 O -0.57 -23.51 13.01 -148.98 -1.94 -25.45 16 9 C 0.01 0.59 4.64 29.85 0.14 0.73 16 10 C -0.53 -30.10 8.88 25.60 0.23 -29.87 16 11 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 12 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 13 N -0.94 -57.22 13.29 21.45 0.28 -56.93 16 14 Si 0.96 44.92 29.54 68.60 2.03 46.95 16 15 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 18 C 0.04 1.57 11.44 85.24 0.98 2.54 16 19 N -0.32 -11.02 12.42 -57.02 -0.71 -11.73 16 20 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 21 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.13 1.46 8.07 -2.39 -0.02 1.44 16 25 H 0.20 4.65 8.06 -2.91 -0.02 4.63 16 26 H 0.38 13.31 8.35 -74.05 -0.62 12.69 16 27 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 28 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 29 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 30 H 0.19 5.80 7.76 -2.91 -0.02 5.78 16 Total: -1.00 -71.77 266.11 2.99 -68.78 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.51 Total: 14.50 kcal Atomic # 6 Polarization: -28.21 SS G_CDS: 4.10 Total: -24.11 kcal Atomic # 7 Polarization: -78.96 SS G_CDS: -1.70 Total: -80.67 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -1.94 Total: -25.45 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -71.77 2.99 -68.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261168826.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.247 kcal (2) G-P(sol) polarization free energy of solvation -71.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds