Wall clock time and date at job start Mon Mar 30 2020 02:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47331 * 2 1 4 4 C 1.52998 * 109.47051 * 120.00380 * 2 1 3 5 5 C 1.50707 * 109.47202 * 174.99744 * 4 2 1 6 6 C 1.34926 * 125.78725 * 94.97471 * 5 4 2 7 7 C 1.41358 * 108.08870 * 180.02562 * 6 5 4 8 8 O 1.21807 * 126.18555 * 180.02562 * 7 6 5 9 9 N 1.34869 * 107.63834 * 359.97438 * 7 6 5 10 10 C 1.36949 * 126.15384 * 179.97438 * 9 7 6 11 11 H 1.08007 * 120.00062 * 211.52236 * 10 9 7 12 12 C 1.38964 * 120.00339 * 31.52616 * 10 9 7 13 13 N 1.31436 * 119.99467 * 19.50656 * 12 10 9 14 14 Si 1.86795 * 120.00298 * 199.50896 * 12 10 9 15 15 H 1.48499 * 109.46889 * 265.74935 * 14 12 10 16 16 H 1.48503 * 109.47323 * 25.74709 * 14 12 10 17 17 H 1.48501 * 109.47357 * 145.75032 * 14 12 10 18 18 N 1.36625 * 125.78827 * 275.30609 * 5 4 2 19 19 H 0.97004 * 125.91766 * 359.95622 * 18 5 4 20 20 H 1.09001 * 109.46927 * 300.00304 * 1 2 3 21 21 H 1.09000 * 109.46732 * 59.99822 * 1 2 3 22 22 H 1.09000 * 109.47524 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46927 * 239.99696 * 2 1 3 24 24 H 1.09004 * 109.47297 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47358 * 299.99795 * 3 2 1 26 26 H 1.08993 * 109.47397 * 60.00277 * 3 2 1 27 27 H 1.08999 * 109.47190 * 54.99391 * 4 2 1 28 28 H 1.08996 * 109.46927 * 294.99422 * 4 2 1 29 29 H 1.08001 * 125.95987 * 359.97438 * 6 5 4 30 30 H 0.97003 * 119.99551 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.8295 1.1888 6 6 4.4180 0.0253 1.7565 7 6 5.7249 -0.4290 1.4668 8 8 6.7644 0.0981 1.8207 9 7 5.6129 -1.5521 0.7286 10 6 6.6477 -2.3048 0.2406 11 1 6.5360 -2.8353 -0.6936 12 6 7.8415 -2.3859 0.9472 13 7 7.8702 -2.0826 2.2258 14 14 9.4054 -2.9260 0.0800 15 1 9.5917 -4.3882 0.2607 16 1 9.3008 -2.6156 -1.3684 17 1 10.5669 -2.2038 0.6585 18 7 4.2473 -1.8063 0.5447 19 1 3.8684 -2.5488 0.0486 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6768 1.9562 0.8899 27 1 1.6053 -1.7198 1.2951 28 1 1.7517 -0.1584 2.1369 29 1 4.1650 0.9039 2.3313 30 1 8.7036 -2.1389 2.7189 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261187839.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:05 Heat of formation + Delta-G solvation = 4.003262 kcal Electronic energy + Delta-G solvation = -13995.561045 eV Core-core repulsion = 11598.900098 eV Total energy + Delta-G solvation = -2396.660947 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.96136 -37.88019 -36.66015 -35.21327 -32.46645 -30.43247 -28.85263 -27.85959 -26.09664 -22.14607 -21.72968 -20.60944 -19.76824 -17.94130 -16.74272 -16.12655 -15.97314 -15.58381 -15.36288 -14.78860 -14.37811 -14.03298 -13.65733 -13.30967 -12.99236 -12.93392 -12.89596 -12.66887 -12.49528 -12.20433 -11.77217 -11.69651 -11.48135 -11.06089 -10.15384 -9.64916 -8.58181 -8.29339 -6.21225 1.15220 1.31071 1.41902 1.51504 1.67062 2.34828 2.81611 3.22399 3.71049 3.92104 4.05630 4.15026 4.45225 4.70283 4.80010 4.90222 4.96641 5.02735 5.14983 5.16215 5.24044 5.35992 5.40805 5.48563 5.58424 5.61398 5.99043 6.33727 6.76107 7.31669 7.51451 8.37245 8.65308 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.061335 B = 0.008117 C = 0.007730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.397003 B = 3448.541783 C = 3621.480598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 C -0.152 4.152 4 C -0.046 4.046 5 C 0.168 3.832 6 C -0.381 4.381 7 C 0.458 3.542 8 O -0.629 6.629 9 N -0.266 5.266 10 C -0.372 4.372 11 H 0.110 0.890 12 C -0.003 4.003 13 N -0.846 5.846 14 Si 1.012 2.988 15 H -0.253 1.253 16 H -0.254 1.254 17 H -0.287 1.287 18 N -0.497 5.497 19 H 0.436 0.564 20 H 0.064 0.936 21 H 0.061 0.939 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.032 0.968 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.101 0.899 28 H 0.105 0.895 29 H 0.144 0.856 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.851 -0.554 -5.492 15.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.106 4.106 3 C -0.209 4.209 4 C -0.085 4.085 5 C 0.047 3.953 6 C -0.413 4.413 7 C 0.258 3.742 8 O -0.516 6.516 9 N -0.073 5.073 10 C -0.500 4.500 11 H 0.127 0.873 12 C -0.214 4.214 13 N -0.477 5.477 14 Si 0.832 3.168 15 H -0.178 1.178 16 H -0.177 1.177 17 H -0.212 1.212 18 N -0.214 5.214 19 H 0.282 0.718 20 H 0.083 0.917 21 H 0.080 0.920 22 H 0.085 0.915 23 H 0.081 0.919 24 H 0.051 0.949 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.119 0.881 28 H 0.123 0.877 29 H 0.162 0.838 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.035 -0.470 -5.261 14.996 hybrid contribution 0.995 -0.430 -0.121 1.091 sum -13.040 -0.901 -5.382 14.136 Atomic orbital electron populations 1.21791 0.92525 1.02693 1.02640 1.21056 0.97144 0.95878 0.96514 1.21901 1.00385 0.96398 1.02249 1.20643 0.83552 1.03486 1.00803 1.21112 0.95127 0.88184 0.90913 1.21480 0.92220 1.08104 1.19459 1.17228 0.91051 0.81842 0.84124 1.90567 1.36946 1.62975 1.61111 1.44467 0.93451 1.21816 1.47536 1.19842 0.90157 1.34696 1.05334 0.87271 1.26687 1.03816 0.95671 0.95178 1.70180 1.28618 1.40083 1.08847 0.84719 0.75052 0.78479 0.78582 1.17785 1.17741 1.21245 1.44764 0.96786 1.27661 1.52239 0.71826 0.91661 0.92002 0.91511 0.91867 0.94897 0.92044 0.91694 0.88085 0.87669 0.83826 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.19 71.98 0.66 -1.30 16 2 C -0.09 -1.77 2.91 -10.80 -0.03 -1.80 16 3 C -0.15 -3.59 8.95 71.98 0.64 -2.95 16 4 C -0.05 -1.07 5.23 29.85 0.16 -0.91 16 5 C 0.17 6.27 5.80 41.05 0.24 6.51 16 6 C -0.38 -18.31 9.70 22.28 0.22 -18.09 16 7 C 0.46 28.20 7.24 84.99 0.62 28.82 16 8 O -0.63 -44.98 15.44 -4.69 -0.07 -45.06 16 9 N -0.27 -15.01 3.62 -315.17 -1.14 -16.15 16 10 C -0.37 -21.38 10.28 84.07 0.86 -20.52 16 11 H 0.11 5.61 7.91 -2.91 -0.02 5.59 16 12 C 0.00 -0.20 4.90 84.93 0.42 0.22 16 13 N -0.85 -54.63 11.15 21.67 0.24 -54.39 16 14 Si 1.01 44.90 29.60 68.60 2.03 46.93 16 15 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 16 H -0.25 -10.56 7.11 99.48 0.71 -9.85 16 17 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 18 N -0.50 -20.73 7.22 -47.31 -0.34 -21.07 16 19 H 0.44 14.34 8.96 -213.31 -1.91 12.43 16 20 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 21 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 22 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.03 1.02 6.64 -2.38 -0.02 1.00 16 25 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.14 6.36 8.06 -2.91 -0.02 6.33 16 30 H 0.27 16.42 8.31 -92.71 -0.77 15.64 16 Total: -1.00 -83.76 257.56 3.72 -80.04 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -0.78 Total: 19.71 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: 3.78 Total: -10.02 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -1.24 Total: -91.60 kcal Atomic # 8 Polarization: -44.98 SS G_CDS: -0.07 Total: -45.06 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -83.76 3.72 -80.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261187839.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.042 kcal (2) G-P(sol) polarization free energy of solvation -83.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds