Wall clock time and date at job start Mon Mar 30 2020 02:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47181 * 2 1 4 4 C 1.38359 * 127.14203 * 93.96006 * 3 2 1 5 5 C 1.39827 * 126.56956 * 359.97438 * 4 3 2 6 6 H 1.07997 * 120.00286 * 6.16483 * 5 4 3 7 7 C 1.40125 * 119.99742 * 186.16255 * 5 4 3 8 8 N 1.30787 * 119.99636 * 6.74399 * 7 5 4 9 9 Si 1.86800 * 119.99968 * 186.74596 * 7 5 4 10 10 H 1.48505 * 109.46596 * 265.01949 * 9 7 5 11 11 H 1.48503 * 109.46924 * 25.01412 * 9 7 5 12 12 H 1.48492 * 109.47433 * 145.01806 * 9 7 5 13 13 N 1.33053 * 106.85659 * 179.73745 * 4 3 2 14 14 N 1.28525 * 109.70640 * 0.25981 * 13 4 3 15 15 C 1.32319 * 110.20233 * 0.02562 * 14 13 4 16 16 N 1.37453 * 126.23701 * 179.97438 * 15 14 13 17 17 C 1.46893 * 111.00157 * 295.76922 * 16 15 14 18 18 C 1.46908 * 110.99756 * 59.72191 * 16 15 14 19 19 H 1.08997 * 109.46813 * 300.00095 * 1 2 3 20 20 H 1.08998 * 109.47180 * 59.99735 * 1 2 3 21 21 H 1.09000 * 109.47231 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47260 * 239.99839 * 2 1 3 23 23 H 1.08998 * 109.47180 * 120.00265 * 2 1 3 24 24 H 0.97006 * 119.99685 * 180.02562 * 8 7 5 25 25 H 1.08996 * 109.47628 * 60.00069 * 17 16 15 26 26 H 1.09004 * 109.46926 * 180.02562 * 17 16 15 27 27 H 1.09003 * 109.46946 * 299.99645 * 17 16 15 28 28 H 1.09000 * 109.47000 * 64.05045 * 18 16 15 29 29 H 1.08993 * 109.46861 * 184.04769 * 18 16 15 30 30 H 1.08994 * 109.46771 * 304.04788 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3686 2.1434 1.1003 5 6 2.3248 1.7430 2.4393 6 1 2.0876 0.7195 2.6893 7 6 2.5887 2.6697 3.4567 8 7 2.7457 3.9347 3.1642 9 14 2.7164 2.0981 5.2305 10 1 1.4026 2.2691 5.9013 11 1 3.1056 0.6653 5.2621 12 1 3.7424 2.9055 5.9381 13 7 2.7601 3.3287 0.6397 14 7 2.6702 3.3468 -0.6423 15 6 2.2186 2.1845 -1.0851 16 7 1.9974 1.8459 -2.3987 17 6 0.9356 2.6749 -2.9845 18 6 3.2355 1.9444 -3.1834 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8934 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 2.9288 4.5762 3.8685 25 1 1.2267 3.7242 -2.9384 26 1 0.7808 2.3857 -4.0240 27 1 0.0111 2.5293 -2.4257 28 1 3.9583 1.2168 -2.8144 29 1 3.0182 1.7412 -4.2319 30 1 3.6485 2.9484 -3.0858 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261212036.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:22 Heat of formation + Delta-G solvation = 56.653497 kcal Electronic energy + Delta-G solvation = -14246.758854 eV Core-core repulsion = 11884.673744 eV Total energy + Delta-G solvation = -2362.085111 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.62823 -38.02666 -35.94315 -35.39668 -31.19041 -30.59677 -28.53565 -27.51666 -25.29942 -24.39216 -22.41200 -20.78435 -19.01734 -17.67009 -17.04462 -16.65065 -16.19100 -15.48800 -15.14769 -14.90159 -14.67917 -13.65298 -13.39308 -13.22322 -13.19096 -12.92832 -12.83691 -12.73179 -12.65423 -12.08838 -11.89573 -11.61240 -11.24081 -10.77016 -10.41096 -9.55642 -9.44065 -8.50545 -6.55328 1.26594 1.42705 1.59536 1.66286 2.01344 2.29211 2.49907 3.25418 3.39458 4.01677 4.23125 4.32456 4.43359 4.48121 4.59864 4.62421 4.79773 4.84177 4.87744 4.92561 5.01542 5.13386 5.27798 5.37050 5.52811 5.89640 5.92808 6.28912 6.59157 6.84123 7.14773 8.46586 8.77370 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.043225 B = 0.010262 C = 0.008977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.625194 B = 2727.766358 C = 3118.361976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.123 3.877 3 N -0.515 5.515 4 C 0.318 3.682 5 C -0.474 4.474 6 H 0.100 0.900 7 C 0.031 3.969 8 N -0.793 5.793 9 Si 1.003 2.997 10 H -0.260 1.260 11 H -0.248 1.248 12 H -0.272 1.272 13 N -0.394 5.394 14 N -0.364 5.364 15 C 0.250 3.750 16 N -0.458 5.458 17 C 0.044 3.956 18 C 0.042 3.958 19 H 0.037 0.963 20 H 0.049 0.951 21 H 0.102 0.898 22 H 0.094 0.906 23 H 0.084 0.916 24 H 0.283 0.717 25 H 0.017 0.983 26 H 0.113 0.887 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.112 0.888 30 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.611 -9.078 -5.304 11.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.000 4.000 3 N -0.216 5.216 4 C 0.071 3.929 5 C -0.514 4.514 6 H 0.118 0.882 7 C -0.189 4.189 8 N -0.419 5.419 9 Si 0.822 3.178 10 H -0.185 1.185 11 H -0.171 1.171 12 H -0.197 1.197 13 N -0.240 5.240 14 N -0.208 5.208 15 C -0.106 4.106 16 N -0.183 5.183 17 C -0.104 4.104 18 C -0.106 4.106 19 H 0.056 0.944 20 H 0.068 0.932 21 H 0.121 0.879 22 H 0.112 0.888 23 H 0.102 0.898 24 H 0.093 0.907 25 H 0.036 0.964 26 H 0.131 0.869 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.130 0.870 30 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -3.213 -7.916 -5.346 10.078 hybrid contribution -0.057 -0.206 0.729 0.760 sum -3.270 -8.122 -4.617 9.898 Atomic orbital electron populations 1.21988 0.94054 1.03527 1.01130 1.21582 0.95823 0.79037 1.03524 1.46373 1.55708 1.13969 1.05514 1.21807 0.94543 0.86854 0.89659 1.18536 1.47775 0.98512 0.86616 0.88211 1.26942 0.91975 0.93910 1.06099 1.70137 1.31572 1.03618 1.36532 0.84901 0.79006 0.79693 0.74217 1.18498 1.17119 1.19729 1.75351 1.30513 1.18727 0.99383 1.74306 1.19196 1.19754 1.07589 1.21928 1.11091 0.89195 0.88410 1.58314 1.09960 1.54162 0.95874 1.22381 0.92767 0.94358 1.00898 1.22391 0.89750 0.99867 0.98554 0.94399 0.93159 0.87927 0.88774 0.89760 0.90708 0.96396 0.86902 0.92785 0.92419 0.87009 0.96355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.60 10.24 71.98 0.74 -3.87 16 2 C 0.12 4.43 6.76 86.38 0.58 5.02 16 3 N -0.51 -25.07 2.85 -523.10 -1.49 -26.56 16 4 C 0.32 18.42 7.50 133.25 1.00 19.42 16 5 C -0.47 -25.79 9.05 23.11 0.21 -25.58 16 6 H 0.10 4.84 7.17 -2.91 -0.02 4.82 16 7 C 0.03 1.62 5.49 85.31 0.47 2.09 16 8 N -0.79 -45.91 12.01 21.86 0.26 -45.64 16 9 Si 1.00 38.49 29.57 68.60 2.03 40.52 16 10 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 11 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16 12 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 13 N -0.39 -25.16 10.57 -55.01 -0.58 -25.74 16 14 N -0.36 -21.25 12.05 -58.10 -0.70 -21.95 16 15 C 0.25 12.20 6.41 260.18 1.67 13.87 16 16 N -0.46 -17.12 4.99 -756.17 -3.78 -20.90 16 17 C 0.04 1.40 9.50 127.69 1.21 2.61 16 18 C 0.04 1.34 9.55 127.69 1.22 2.56 16 19 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 20 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 21 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 22 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 23 H 0.08 2.92 7.33 -2.39 -0.02 2.90 16 24 H 0.28 14.79 8.30 -92.70 -0.77 14.02 16 25 H 0.02 0.63 8.13 -2.39 -0.02 0.61 16 26 H 0.11 2.54 8.08 -2.39 -0.02 2.52 16 27 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.11 2.51 8.05 -2.39 -0.02 2.49 16 30 H 0.02 0.65 7.97 -2.39 -0.02 0.63 16 Total: -1.00 -74.81 261.73 3.96 -70.86 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 1.12 Total: 13.28 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 7.10 Total: 16.12 kcal Atomic # 7 Polarization: -134.50 SS G_CDS: -6.29 Total: -140.79 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.52 kcal Total: -74.81 3.96 -70.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261212036.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.510 kcal (2) G-P(sol) polarization free energy of solvation -74.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds