Wall clock time and date at job start Mon Mar 30 2020 02:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47175 * 2 1 4 4 C 1.53001 * 109.47072 * 240.00117 * 2 1 3 5 5 N 1.46500 * 109.46870 * 120.00332 * 2 1 3 6 6 N 1.29016 * 126.43384 * 246.04197 * 5 2 1 7 7 N 1.28744 * 108.80765 * 180.02562 * 6 5 2 8 8 N 1.28840 * 109.39607 * 359.76832 * 7 6 5 9 9 C 1.31073 * 107.98942 * 0.37683 * 8 7 6 10 10 C 1.50704 * 126.65879 * 179.90023 * 9 8 7 11 11 C 1.50694 * 109.46941 * 276.19533 * 10 9 8 12 12 H 1.08005 * 120.00171 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00366 * 179.72537 * 11 10 9 14 14 N 1.31519 * 119.99591 * 0.27302 * 13 11 10 15 15 Si 1.86790 * 120.00471 * 180.27796 * 13 11 10 16 16 H 1.48498 * 109.47598 * 89.99812 * 15 13 11 17 17 H 1.48501 * 109.47263 * 210.00254 * 15 13 11 18 18 H 1.48505 * 109.47120 * 329.99864 * 15 13 11 19 19 H 1.08997 * 109.47576 * 304.97411 * 1 2 3 20 20 H 1.09006 * 109.47242 * 64.97369 * 1 2 3 21 21 H 1.09000 * 109.47152 * 184.96961 * 1 2 3 22 22 H 1.09001 * 109.47116 * 179.97438 * 3 2 1 23 23 H 1.09004 * 109.47167 * 300.00616 * 3 2 1 24 24 H 1.08998 * 109.46862 * 59.99898 * 3 2 1 25 25 H 1.09004 * 109.47371 * 299.99950 * 4 2 1 26 26 H 1.09002 * 109.46842 * 60.00259 * 4 2 1 27 27 H 1.09001 * 109.46933 * 180.02562 * 4 2 1 28 28 H 1.09004 * 109.47091 * 156.19818 * 10 9 8 29 29 H 1.08998 * 109.46855 * 36.19543 * 10 9 8 30 30 H 0.96993 * 120.00106 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6907 1.1961 6 7 2.6710 -0.1602 2.1744 7 7 2.9312 -1.0737 3.0435 8 7 2.4475 -2.1978 2.6406 9 6 1.8707 -1.9979 1.4807 10 6 1.1722 -3.0300 0.6334 11 6 2.1887 -3.7679 -0.1992 12 1 3.2359 -3.5151 -0.1221 13 6 1.7826 -4.7700 -1.0547 14 7 0.5074 -5.0782 -1.1482 15 14 3.0434 -5.6899 -2.0809 16 1 3.5291 -6.8724 -1.3254 17 1 2.4169 -6.1371 -3.3509 18 1 4.1868 -4.7915 -2.3826 19 1 -0.3634 0.5890 0.8420 20 1 -0.3634 0.4348 -0.9312 21 1 -0.3633 -1.0238 0.0890 22 1 3.1300 1.4425 0.0005 23 1 1.6766 1.9564 -0.8900 24 1 1.6766 1.9563 0.8900 25 1 1.6767 -1.7489 -1.2493 26 1 1.6766 -0.2073 -2.1392 27 1 3.1300 -0.7216 -1.2490 28 1 0.4547 -2.5366 -0.0223 29 1 0.6492 -3.7360 1.2784 30 1 0.2217 -5.7828 -1.7503 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261213112.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:53 Heat of formation + Delta-G solvation = 80.087896 kcal Electronic energy + Delta-G solvation = -14418.475980 eV Core-core repulsion = 12057.407061 eV Total energy + Delta-G solvation = -2361.068919 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -45.05980 -38.80064 -35.84447 -34.03825 -33.41501 -30.22972 -28.48397 -28.29086 -25.95989 -24.88655 -23.17420 -21.22181 -18.76440 -17.73617 -17.65132 -16.74540 -15.62704 -15.41156 -15.15591 -14.41016 -14.33965 -13.91891 -13.45733 -13.34876 -13.27033 -12.98688 -12.73492 -12.70230 -12.66460 -12.52004 -12.13760 -11.93251 -11.87062 -11.57907 -11.52815 -10.67336 -10.62411 -8.27171 -6.37481 0.41862 1.20416 1.32754 1.41784 1.46280 1.54201 2.39676 3.06330 3.33677 3.46504 3.67953 3.81948 3.84812 4.44828 4.57477 4.60680 4.70358 4.72270 4.80391 4.83762 4.90809 4.99550 5.16424 5.22624 5.32726 5.50446 5.59642 5.65443 5.97840 6.65512 7.29625 7.73765 8.82985 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.033888 B = 0.011269 C = 0.009996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.045463 B = 2484.095788 C = 2800.334599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.155 3.845 3 C -0.139 4.139 4 C -0.174 4.174 5 N -0.295 5.295 6 N -0.113 5.113 7 N -0.120 5.120 8 N -0.355 5.355 9 C 0.225 3.775 10 C 0.101 3.899 11 C -0.525 4.525 12 H 0.044 0.956 13 C 0.030 3.970 14 N -0.911 5.911 15 Si 0.956 3.044 16 H -0.280 1.280 17 H -0.272 1.272 18 H -0.270 1.270 19 H 0.068 0.932 20 H 0.122 0.878 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.118 0.882 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.116 0.884 27 H 0.048 0.952 28 H 0.065 0.935 29 H 0.032 0.968 30 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.494 10.699 -4.835 11.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.074 3.926 3 C -0.197 4.197 4 C -0.232 4.232 5 N -0.098 5.098 6 N -0.099 5.099 7 N -0.113 5.113 8 N -0.205 5.205 9 C -0.053 4.053 10 C 0.061 3.939 11 C -0.564 4.564 12 H 0.062 0.938 13 C -0.171 4.171 14 N -0.549 5.549 15 Si 0.781 3.219 16 H -0.206 1.206 17 H -0.197 1.197 18 H -0.194 1.194 19 H 0.087 0.913 20 H 0.141 0.859 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.136 0.864 24 H 0.087 0.913 25 H 0.101 0.899 26 H 0.134 0.866 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.904 11.032 -3.754 11.689 hybrid contribution 0.244 -1.040 -0.884 1.387 sum -0.660 9.992 -4.638 11.036 Atomic orbital electron populations 1.22381 0.90288 1.03633 1.05658 1.21736 0.96700 0.94480 0.79636 1.22028 1.01846 0.90723 1.05082 1.22539 1.01392 1.03575 0.95714 1.49157 1.35937 1.07406 1.17307 1.78473 1.12340 1.23260 0.95801 1.78375 1.18586 0.93761 1.20602 1.74888 1.15484 1.18860 1.11244 1.26899 0.98183 0.86624 0.93560 1.18023 0.94850 0.89093 0.91939 1.20837 0.92734 1.19426 1.23397 0.93772 1.25543 0.97088 0.96855 0.97600 1.69985 1.15615 1.31186 1.38104 0.85585 0.79185 0.78837 0.78325 1.20637 1.19705 1.19425 0.91296 0.85929 0.92368 0.92360 0.86383 0.91335 0.89902 0.86571 0.93309 0.91699 0.94993 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.93 8.55 71.98 0.62 -3.32 16 2 C 0.16 4.45 1.06 3.60 0.00 4.45 16 3 C -0.14 -3.02 7.99 71.98 0.58 -2.45 16 4 C -0.17 -5.15 8.34 71.98 0.60 -4.55 16 5 N -0.29 -11.49 3.20 -298.29 -0.95 -12.44 16 6 N -0.11 -4.68 12.33 37.02 0.46 -4.22 16 7 N -0.12 -5.60 13.43 37.01 0.50 -5.11 16 8 N -0.35 -17.66 12.36 -50.45 -0.62 -18.28 16 9 C 0.22 10.32 6.82 138.14 0.94 11.26 16 10 C 0.10 4.85 4.48 29.10 0.13 4.98 16 11 C -0.52 -27.15 7.45 25.60 0.19 -26.96 16 12 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 13 C 0.03 1.56 5.46 84.65 0.46 2.02 16 14 N -0.91 -48.21 13.29 21.45 0.28 -47.93 16 15 Si 0.96 40.92 29.54 68.60 2.03 42.95 16 16 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 17 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 18 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 19 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 20 H 0.12 2.04 8.14 -2.38 -0.02 2.02 16 21 H 0.06 1.72 5.60 -2.39 -0.01 1.71 16 22 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.07 1.51 8.11 -2.39 -0.02 1.49 16 25 H 0.08 3.10 4.05 -2.39 -0.01 3.09 16 26 H 0.12 2.42 8.14 -2.39 -0.02 2.41 16 27 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.07 2.94 4.51 -2.38 -0.01 2.93 16 29 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 Total: -1.00 -61.92 250.91 6.34 -55.57 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: 1.14 Total: 4.01 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: 3.52 Total: -14.56 kcal Atomic # 7 Polarization: -87.64 SS G_CDS: -0.34 Total: -87.98 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Total: -61.92 6.34 -55.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261213112.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.662 kcal (2) G-P(sol) polarization free energy of solvation -61.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds