Wall clock time and date at job start Mon Mar 30 2020 02:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47205 * 2 1 4 4 C 1.52998 * 109.47591 * 120.00713 * 2 1 3 5 5 H 1.08998 * 109.46570 * 297.96972 * 4 2 1 6 6 C 1.50698 * 109.47107 * 57.96680 * 4 2 1 7 7 H 1.08001 * 120.00217 * 27.24128 * 6 4 2 8 8 C 1.37881 * 120.00154 * 207.23793 * 6 4 2 9 9 N 1.31512 * 119.99709 * 5.68554 * 8 6 4 10 10 Si 1.86793 * 120.00036 * 185.67840 * 8 6 4 11 11 H 1.48501 * 109.47195 * 60.00498 * 10 8 6 12 12 H 1.48503 * 109.47030 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47510 * 300.00435 * 10 8 6 14 14 C 1.50699 * 109.47301 * 177.97174 * 4 2 1 15 15 C 1.39818 * 125.85740 * 275.00869 * 14 4 2 16 16 C 1.35949 * 107.83538 * 179.97438 * 15 14 4 17 17 O 1.35763 * 126.19138 * 180.02562 * 16 15 14 18 18 N 1.35134 * 107.61232 * 0.02562 * 16 15 14 19 19 H 0.96994 * 126.03185 * 180.25432 * 18 16 15 20 20 N 1.30827 * 125.85932 * 94.97487 * 14 4 2 21 21 H 1.09003 * 109.47321 * 294.42711 * 1 2 3 22 22 H 1.09007 * 109.47539 * 54.42870 * 1 2 3 23 23 H 1.09000 * 109.47537 * 174.42906 * 1 2 3 24 24 H 1.09006 * 109.47134 * 240.00618 * 2 1 3 25 25 H 1.09002 * 109.47267 * 179.97438 * 3 2 1 26 26 H 1.08995 * 109.47522 * 300.00400 * 3 2 1 27 27 H 1.09001 * 109.46744 * 60.00718 * 3 2 1 28 28 H 0.97005 * 119.99970 * 179.97438 * 9 8 6 29 29 H 1.08006 * 126.08065 * 359.97438 * 15 14 4 30 30 H 0.96701 * 113.99746 * 269.98543 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 1.7067 -0.1870 2.1387 6 6 1.4970 -2.1269 1.2744 7 1 1.2446 -2.6251 0.3500 8 6 1.3225 -2.7770 2.4778 9 7 1.5230 -2.1342 3.6075 10 14 0.8011 -4.5705 2.5034 11 1 1.8167 -5.3914 1.7962 12 1 0.6834 -5.0317 3.9100 13 1 -0.5116 -4.7142 1.8243 14 6 3.5462 -0.7650 1.2241 15 6 4.3270 -1.7239 0.5717 16 6 5.6331 -1.4139 0.7869 17 8 6.7074 -2.1006 0.3205 18 7 5.6684 -0.2986 1.5492 19 1 6.4674 0.1563 1.8580 20 7 4.3474 0.0881 1.8087 21 1 -0.3634 0.4250 0.9357 22 1 -0.3634 0.5978 -0.8359 23 1 -0.3634 -1.0228 -0.0998 24 1 1.8933 -0.5138 -0.8901 25 1 3.1300 1.4425 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6767 1.9562 0.8901 28 1 1.3999 -2.5915 4.4541 29 1 3.9582 -2.5618 -0.0014 30 1 7.0168 -2.7978 0.9149 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261218546.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:25 Heat of formation + Delta-G solvation = 14.322849 kcal Electronic energy + Delta-G solvation = -14132.418429 eV Core-core repulsion = 11736.204973 eV Total energy + Delta-G solvation = -2396.213456 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.40869 -36.91157 -35.59159 -32.31955 -30.56527 -28.28622 -27.25954 -26.09123 -23.31316 -20.88142 -19.87156 -18.60588 -18.05838 -16.43621 -15.85161 -14.60048 -14.34338 -13.74137 -13.39240 -13.16959 -12.77628 -12.50395 -11.78178 -11.45516 -11.29076 -11.10297 -10.90403 -10.70343 -10.35717 -10.18574 -9.85500 -9.54903 -9.36125 -8.97542 -8.44047 -8.10989 -7.72374 -6.02495 -4.06082 2.49760 3.31428 3.37308 3.39464 3.42821 3.87580 4.43313 4.75330 5.29859 5.79450 6.02861 6.05369 6.16511 6.43434 6.48069 6.66303 6.72936 6.76156 6.83474 7.02598 7.17358 7.23716 7.28044 7.39427 7.76607 7.79219 7.92207 8.23119 8.38542 8.79309 9.01880 9.57997 11.06456 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.022436 B = 0.014215 C = 0.010140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.703518 B = 1969.336882 C = 2760.761085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.080 4.080 3 C -0.144 4.144 4 C 0.109 3.891 5 H 0.070 0.930 6 C -0.504 4.504 7 H 0.060 0.940 8 C 0.069 3.931 9 N -0.882 5.882 10 Si 0.887 3.113 11 H -0.276 1.276 12 H -0.289 1.289 13 H -0.275 1.275 14 C 0.148 3.852 15 C -0.244 4.244 16 C 0.221 3.779 17 O -0.477 6.477 18 N -0.508 5.508 19 H 0.422 0.578 20 N -0.299 5.299 21 H 0.048 0.952 22 H 0.029 0.971 23 H 0.062 0.938 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.036 0.964 27 H 0.049 0.951 28 H 0.262 0.738 29 H 0.145 0.855 30 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.801 1.162 -4.343 6.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.099 4.099 3 C -0.201 4.201 4 C 0.088 3.912 5 H 0.088 0.912 6 C -0.543 4.543 7 H 0.078 0.922 8 C -0.134 4.134 9 N -0.519 5.519 10 Si 0.715 3.285 11 H -0.202 1.202 12 H -0.215 1.215 13 H -0.201 1.201 14 C -0.019 4.019 15 C -0.275 4.275 16 C 0.052 3.948 17 O -0.280 6.280 18 N -0.225 5.225 19 H 0.263 0.737 20 N -0.125 5.125 21 H 0.067 0.933 22 H 0.048 0.952 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.163 0.837 30 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 4.880 2.456 -3.972 6.755 hybrid contribution 0.577 -2.034 0.303 2.135 sum 5.457 0.423 -3.669 6.589 Atomic orbital electron populations 1.21625 0.95605 1.01532 0.99536 1.21052 0.95450 0.94163 0.99261 1.21881 1.00759 0.97504 0.99987 1.17577 0.81959 0.96880 0.94778 0.91205 1.20872 1.42488 0.98399 0.92525 0.92197 1.24996 0.94816 0.97819 0.95767 1.69955 1.48462 1.36159 0.97340 0.86736 0.79227 0.85637 0.76908 1.20182 1.21475 1.20076 1.23396 0.98752 0.89411 0.90305 1.21162 0.89543 1.05406 1.11366 1.18859 0.87849 0.90180 0.97864 1.84844 1.46575 1.50433 1.46124 1.46791 1.08535 1.23521 1.43631 0.73658 1.77485 0.84630 1.24870 1.25472 0.93316 0.95203 0.91933 0.92795 0.93305 0.94514 0.93202 0.92862 0.83699 0.75720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.80 37.15 0.33 -2.11 16 2 C -0.08 -1.67 2.49 -90.63 -0.23 -1.89 16 3 C -0.14 -2.74 8.97 37.16 0.33 -2.41 16 4 C 0.11 2.66 1.87 -92.93 -0.17 2.49 16 5 H 0.07 1.94 7.46 -51.93 -0.39 1.55 16 6 C -0.50 -13.08 6.43 -34.44 -0.22 -13.30 16 7 H 0.06 1.52 7.73 -52.49 -0.41 1.11 16 8 C 0.07 1.87 5.45 -17.82 -0.10 1.77 16 9 N -0.88 -25.23 12.88 55.43 0.71 -24.51 16 10 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 14 C 0.15 3.52 5.11 -82.43 -0.42 3.10 16 15 C -0.24 -5.40 10.05 -39.81 -0.40 -5.80 16 16 C 0.22 4.25 8.43 -16.92 -0.14 4.10 16 17 O -0.48 -7.36 13.65 -19.00 -0.26 -7.62 16 18 N -0.51 -9.67 7.36 30.36 0.22 -9.45 16 19 H 0.42 6.39 8.96 -182.63 -1.64 4.75 16 20 N -0.30 -6.86 12.23 33.66 0.41 -6.45 16 21 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 22 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 1.25 7.31 -51.93 -0.38 0.87 16 24 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.05 0.97 6.92 -51.93 -0.36 0.61 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 29 H 0.15 3.14 7.99 -52.48 -0.42 2.72 16 30 H 0.39 4.06 9.06 45.56 0.41 4.48 16 LS Contribution 259.06 15.07 3.90 3.90 Total: -1.00 -30.33 259.06 -5.47 -35.80 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -4.42 Total: 6.68 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -1.02 Total: -14.05 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 1.35 Total: -40.41 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -0.26 Total: -7.62 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.33 -5.47 -35.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218546.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.122 kcal (2) G-P(sol) polarization free energy of solvation -30.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds