Wall clock time and date at job start Mon Mar 30 2020 02:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47205 * 2 1 4 4 C 1.52998 * 109.47591 * 120.00713 * 2 1 3 5 5 H 1.08998 * 109.46570 * 297.96972 * 4 2 1 6 6 C 1.50698 * 109.47107 * 57.96680 * 4 2 1 7 7 H 1.08001 * 120.00217 * 27.24128 * 6 4 2 8 8 C 1.37881 * 120.00154 * 207.23793 * 6 4 2 9 9 N 1.31512 * 119.99709 * 5.68554 * 8 6 4 10 10 Si 1.86793 * 120.00036 * 185.67840 * 8 6 4 11 11 H 1.48501 * 109.47195 * 60.00498 * 10 8 6 12 12 H 1.48503 * 109.47030 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47510 * 300.00435 * 10 8 6 14 14 C 1.50699 * 109.47301 * 177.97174 * 4 2 1 15 15 C 1.39818 * 125.85740 * 275.00869 * 14 4 2 16 16 C 1.35949 * 107.83538 * 179.97438 * 15 14 4 17 17 O 1.35763 * 126.19138 * 180.02562 * 16 15 14 18 18 N 1.35134 * 107.61232 * 0.02562 * 16 15 14 19 19 H 0.96994 * 126.03185 * 180.25432 * 18 16 15 20 20 N 1.30827 * 125.85932 * 94.97487 * 14 4 2 21 21 H 1.09003 * 109.47321 * 294.42711 * 1 2 3 22 22 H 1.09007 * 109.47539 * 54.42870 * 1 2 3 23 23 H 1.09000 * 109.47537 * 174.42906 * 1 2 3 24 24 H 1.09006 * 109.47134 * 240.00618 * 2 1 3 25 25 H 1.09002 * 109.47267 * 179.97438 * 3 2 1 26 26 H 1.08995 * 109.47522 * 300.00400 * 3 2 1 27 27 H 1.09001 * 109.46744 * 60.00718 * 3 2 1 28 28 H 0.97005 * 119.99970 * 179.97438 * 9 8 6 29 29 H 1.08006 * 126.08065 * 359.97438 * 15 14 4 30 30 H 0.96701 * 113.99746 * 269.98543 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 1.7067 -0.1870 2.1387 6 6 1.4970 -2.1269 1.2744 7 1 1.2446 -2.6251 0.3500 8 6 1.3225 -2.7770 2.4778 9 7 1.5230 -2.1342 3.6075 10 14 0.8011 -4.5705 2.5034 11 1 1.8167 -5.3914 1.7962 12 1 0.6834 -5.0317 3.9100 13 1 -0.5116 -4.7142 1.8243 14 6 3.5462 -0.7650 1.2241 15 6 4.3270 -1.7239 0.5717 16 6 5.6331 -1.4139 0.7869 17 8 6.7074 -2.1006 0.3205 18 7 5.6684 -0.2986 1.5492 19 1 6.4674 0.1563 1.8580 20 7 4.3474 0.0881 1.8087 21 1 -0.3634 0.4250 0.9357 22 1 -0.3634 0.5978 -0.8359 23 1 -0.3634 -1.0228 -0.0998 24 1 1.8933 -0.5138 -0.8901 25 1 3.1300 1.4425 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6767 1.9562 0.8901 28 1 1.3999 -2.5915 4.4541 29 1 3.9582 -2.5618 -0.0014 30 1 7.0168 -2.7978 0.9149 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261218546.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:25 Heat of formation + Delta-G solvation = -8.785928 kcal Electronic energy + Delta-G solvation = -14133.420501 eV Core-core repulsion = 11736.204973 eV Total energy + Delta-G solvation = -2397.215528 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.03790 -38.36518 -37.24718 -34.27447 -32.24478 -29.91978 -29.11267 -27.67448 -25.25122 -22.41807 -21.53943 -20.20845 -19.72659 -18.34254 -17.38801 -16.50567 -15.96696 -15.38630 -14.96477 -14.79541 -14.53559 -14.13173 -13.49271 -13.22125 -12.89524 -12.73000 -12.65081 -12.41810 -12.12665 -11.89559 -11.53586 -11.21918 -11.13165 -10.87701 -10.45864 -9.80971 -9.36074 -8.05976 -6.14438 0.94760 1.47287 1.48081 1.55207 1.90196 2.13694 2.49463 3.21477 3.45475 4.11847 4.39983 4.47361 4.54184 4.82281 4.97308 5.01799 5.12223 5.16261 5.24412 5.36491 5.49007 5.57505 5.70573 5.79297 5.93884 5.98552 6.16779 6.37089 6.90470 6.99600 7.10337 7.52627 9.03240 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.022436 B = 0.014215 C = 0.010140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.703518 B = 1969.336882 C = 2760.761085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.079 4.079 3 C -0.134 4.134 4 C 0.109 3.891 5 H 0.027 0.973 6 C -0.502 4.502 7 H 0.063 0.937 8 C 0.019 3.981 9 N -0.922 5.922 10 Si 0.947 3.053 11 H -0.269 1.269 12 H -0.293 1.293 13 H -0.267 1.267 14 C 0.131 3.869 15 C -0.282 4.282 16 C 0.254 3.746 17 O -0.468 6.468 18 N -0.492 5.492 19 H 0.440 0.560 20 N -0.327 5.327 21 H 0.035 0.965 22 H 0.063 0.937 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.036 0.964 26 H 0.066 0.934 27 H 0.041 0.959 28 H 0.258 0.742 29 H 0.143 0.857 30 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.683 0.668 -5.605 8.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.099 4.099 3 C -0.192 4.192 4 C 0.088 3.912 5 H 0.046 0.954 6 C -0.540 4.540 7 H 0.081 0.919 8 C -0.180 4.180 9 N -0.562 5.562 10 Si 0.772 3.228 11 H -0.194 1.194 12 H -0.219 1.219 13 H -0.191 1.191 14 C -0.035 4.035 15 C -0.312 4.312 16 C 0.084 3.916 17 O -0.274 6.274 18 N -0.211 5.211 19 H 0.285 0.715 20 N -0.154 5.154 21 H 0.054 0.946 22 H 0.081 0.919 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.085 0.915 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.161 0.839 30 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 5.780 1.952 -5.241 8.043 hybrid contribution 0.438 -1.850 0.651 2.010 sum 6.219 0.102 -4.590 7.730 Atomic orbital electron populations 1.21567 0.94526 1.01396 1.00263 1.21033 0.96369 0.94979 0.97487 1.21771 0.99917 0.96413 1.01071 1.17456 0.83055 0.96076 0.94623 0.95427 1.21142 1.41409 0.99062 0.92436 0.91900 1.25711 0.95275 1.01536 0.95471 1.70109 1.50632 1.37644 0.97765 0.85785 0.79277 0.81088 0.76612 1.19395 1.21903 1.19137 1.23202 0.98476 0.90477 0.91308 1.21187 0.90792 1.05945 1.13265 1.18652 0.87968 0.89558 0.95467 1.84799 1.44835 1.51053 1.46752 1.46700 1.08180 1.23419 1.42795 0.71452 1.77390 0.86119 1.25618 1.26277 0.94586 0.91856 0.93040 0.92549 0.94474 0.91484 0.93940 0.93301 0.83929 0.72434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.56 8.80 71.98 0.63 -3.93 16 2 C -0.08 -3.28 2.49 -10.80 -0.03 -3.31 16 3 C -0.13 -5.00 8.97 71.98 0.65 -4.35 16 4 C 0.11 5.43 1.87 -12.29 -0.02 5.41 16 5 H 0.03 1.60 7.46 -2.39 -0.02 1.58 16 6 C -0.50 -26.31 6.43 25.60 0.16 -26.15 16 7 H 0.06 3.18 7.73 -2.91 -0.02 3.16 16 8 C 0.02 1.04 5.45 84.66 0.46 1.50 16 9 N -0.92 -54.16 12.88 21.45 0.28 -53.88 16 10 Si 0.95 42.64 29.54 68.60 2.03 44.67 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 12 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 13 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 14 C 0.13 6.26 5.11 43.09 0.22 6.49 16 15 C -0.28 -12.23 10.05 22.12 0.22 -12.01 16 16 C 0.25 9.21 8.43 83.65 0.71 9.92 16 17 O -0.47 -12.77 13.65 -90.89 -1.24 -14.01 16 18 N -0.49 -17.86 7.36 -169.17 -1.25 -19.11 16 19 H 0.44 12.29 8.96 -213.35 -1.91 10.38 16 20 N -0.33 -14.98 12.23 -47.42 -0.58 -15.56 16 21 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 23 H 0.05 2.03 7.31 -2.39 -0.02 2.01 16 24 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 25 H 0.04 1.45 6.92 -2.39 -0.02 1.43 16 26 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 29 H 0.14 6.10 7.99 -2.91 -0.02 6.08 16 30 H 0.42 6.99 9.06 -74.06 -0.67 6.32 16 Total: -1.00 -65.50 259.06 0.81 -64.68 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -1.43 Total: 19.63 kcal Atomic # 6 Polarization: -29.43 SS G_CDS: 3.00 Total: -26.43 kcal Atomic # 7 Polarization: -87.00 SS G_CDS: -1.55 Total: -88.55 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -1.24 Total: -14.01 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -65.50 0.81 -64.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261218546.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.898 kcal (2) G-P(sol) polarization free energy of solvation -65.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds