Wall clock time and date at job start Mon Mar 30 2020 02:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47092 * 2 1 4 4 C 1.50696 * 109.47084 * 239.99370 * 2 1 3 5 5 H 1.08007 * 119.99640 * 240.00282 * 4 2 1 6 6 C 1.37877 * 120.00363 * 60.00420 * 4 2 1 7 7 N 1.31512 * 119.99598 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46923 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47039 * 119.99510 * 8 6 4 11 11 H 1.48495 * 109.46988 * 240.00129 * 8 6 4 12 12 C 1.50704 * 109.46653 * 119.99450 * 2 1 3 13 13 C 1.34086 * 126.35800 * 239.99486 * 12 2 1 14 14 N 1.34727 * 107.79289 * 180.02562 * 13 12 2 15 15 C 1.31048 * 108.60404 * 0.02562 * 14 13 12 16 16 N 1.38165 * 125.71626 * 180.02562 * 15 14 13 17 17 C 1.46502 * 119.99479 * 359.97438 * 16 15 14 18 18 C 1.46497 * 120.00494 * 179.97438 * 16 15 14 19 19 O 1.34214 * 108.57530 * 359.97438 * 15 14 13 20 20 H 1.08999 * 109.47244 * 300.00709 * 1 2 3 21 21 H 1.09000 * 109.46441 * 60.00435 * 1 2 3 22 22 H 1.09000 * 109.46832 * 180.02562 * 1 2 3 23 23 H 0.97003 * 119.99919 * 180.02562 * 7 6 4 24 24 H 1.08006 * 126.10464 * 0.06347 * 13 12 2 25 25 H 1.08994 * 109.47335 * 90.00171 * 17 16 15 26 26 H 1.09003 * 109.46991 * 209.99728 * 17 16 15 27 27 H 1.09001 * 109.47053 * 329.99622 * 17 16 15 28 28 H 1.08998 * 109.46901 * 89.99660 * 18 16 15 29 29 H 1.08998 * 109.47567 * 210.00075 * 18 16 15 30 30 H 1.09001 * 109.46925 * 330.00510 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.6994 -0.2396 -2.4827 7 7 0.9430 0.8294 -2.6035 8 14 2.3226 -1.1200 -4.0078 9 1 3.1475 -2.2868 -3.6035 10 1 1.1679 -1.5871 -4.8163 11 1 3.1475 -0.1863 -4.8159 12 6 2.0323 -0.7103 1.2306 13 6 2.8063 -0.1852 2.1913 14 7 3.0302 -1.1447 3.1101 15 6 2.4133 -2.2375 2.7322 16 7 2.4077 -3.4380 3.4160 17 6 3.1370 -3.5643 4.6803 18 6 1.6725 -4.5847 2.8768 19 8 1.7870 -1.9948 1.5702 20 1 -0.3634 0.5139 0.8899 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 0.7084 1.1605 -3.4845 24 1 3.1827 0.8267 2.2232 25 1 2.4787 -3.2991 5.5075 26 1 3.4775 -4.5926 4.8022 27 1 3.9974 -2.8952 4.6717 28 1 2.3293 -5.1656 2.2294 29 1 1.3242 -5.2116 3.6976 30 1 0.8169 -4.2301 2.3021 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261219340.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:39 Heat of formation + Delta-G solvation = 31.483733 kcal Electronic energy + Delta-G solvation = -13865.757238 eV Core-core repulsion = 11470.287934 eV Total energy + Delta-G solvation = -2395.469305 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.25091 -36.60690 -34.36069 -33.69276 -31.08685 -28.12205 -27.80143 -25.22953 -24.63390 -21.76799 -20.88637 -19.55883 -17.20070 -16.45289 -15.90272 -15.14066 -14.92374 -14.26877 -13.89330 -13.20834 -12.87466 -12.54405 -12.45940 -12.25252 -11.95591 -11.50349 -11.01164 -10.92272 -10.54674 -10.49286 -10.23968 -10.12546 -9.42254 -9.34511 -8.95122 -8.46779 -6.87182 -6.07922 -4.15659 2.57804 2.64689 3.26533 3.34348 3.39813 3.65444 4.08669 4.39211 5.04740 5.22735 5.28447 5.39250 5.63217 5.68233 5.78809 5.87378 6.04766 6.29019 6.65688 6.85382 6.91353 7.03072 7.10775 7.25173 7.59000 7.65776 7.80095 7.98828 8.25425 8.72837 8.85523 9.49252 10.97062 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.041976 B = 0.008442 C = 0.007789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.893536 B = 3316.073233 C = 3594.053094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.119 3.881 3 H 0.062 0.938 4 C -0.512 4.512 5 H 0.057 0.943 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.005 3.995 13 C -0.068 4.068 14 N -0.536 5.536 15 C 0.412 3.588 16 N -0.593 5.593 17 C 0.121 3.879 18 C 0.102 3.898 19 O -0.213 6.213 20 H 0.012 0.988 21 H 0.091 0.909 22 H 0.030 0.970 23 H 0.263 0.737 24 H 0.173 0.827 25 H 0.047 0.953 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.059 -7.408 9.434 12.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.100 3.900 3 H 0.080 0.920 4 C -0.550 4.550 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C -0.049 4.049 13 C -0.204 4.204 14 N -0.276 5.276 15 C 0.115 3.885 16 N -0.324 5.324 17 C -0.021 4.021 18 C -0.041 4.041 19 O -0.100 6.100 20 H 0.031 0.969 21 H 0.110 0.890 22 H 0.049 0.951 23 H 0.073 0.927 24 H 0.190 0.810 25 H 0.065 0.935 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.292 -7.347 9.837 12.345 hybrid contribution -0.068 -0.552 -1.473 1.575 sum 1.223 -7.899 8.363 11.569 Atomic orbital electron populations 1.21799 0.97135 0.99713 1.00697 1.17596 0.93235 0.94124 0.85014 0.92022 1.21074 1.31565 1.12629 0.89755 0.92422 1.24930 0.94890 0.94984 0.98995 1.69873 1.36491 1.22818 1.23647 0.86444 0.78687 0.79725 0.82671 1.19770 1.20871 1.20814 1.24345 1.01113 0.79502 0.99959 1.22603 1.04861 0.99954 0.92958 1.70569 1.27343 0.98813 1.30866 1.21407 0.93890 0.89260 0.83958 1.44719 1.57832 1.06028 1.23805 1.21481 0.96265 1.01736 0.82631 1.21605 0.96183 0.87335 0.99017 1.84394 1.60316 1.31278 1.34047 0.96880 0.89039 0.95121 0.92749 0.80983 0.93474 0.91458 0.90476 0.93173 0.91077 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 8.95 37.16 0.33 -3.00 16 2 C 0.12 3.05 2.71 -92.92 -0.25 2.80 16 3 H 0.06 1.62 8.11 -51.93 -0.42 1.20 16 4 C -0.51 -14.29 8.55 -34.44 -0.29 -14.58 16 5 H 0.06 1.65 7.74 -52.48 -0.41 1.25 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.91 11.32 55.43 0.63 -24.28 16 8 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.00 0.11 5.82 -35.77 -0.21 -0.10 16 13 C -0.07 -1.50 11.77 -17.74 -0.21 -1.70 16 14 N -0.54 -11.47 10.62 -14.45 -0.15 -11.62 16 15 C 0.41 8.47 8.43 -86.99 -0.73 7.74 16 16 N -0.59 -9.40 3.37 -191.89 -0.65 -10.04 16 17 C 0.12 1.44 10.57 59.85 0.63 2.08 16 18 C 0.10 1.27 10.60 59.85 0.63 1.91 16 19 O -0.21 -4.96 10.23 3.69 0.04 -4.92 16 20 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 21 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 22 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 24 H 0.17 3.33 8.06 -52.48 -0.42 2.91 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 27 H 0.08 1.02 7.64 -51.93 -0.40 0.62 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 30 H 0.07 0.98 7.71 -51.93 -0.40 0.58 16 LS Contribution 261.44 15.07 3.94 3.94 Total: -1.00 -30.87 261.44 -5.43 -36.30 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: -4.03 Total: -2.45 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -0.19 Total: -3.21 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: -0.17 Total: -45.94 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: 0.04 Total: -4.92 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.87 -5.43 -36.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261219340.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.787 kcal (2) G-P(sol) polarization free energy of solvation -30.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds