Wall clock time and date at job start Mon Mar 30 2020 02:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47092 * 2 1 4 4 C 1.50696 * 109.47084 * 239.99370 * 2 1 3 5 5 H 1.08007 * 119.99640 * 240.00282 * 4 2 1 6 6 C 1.37877 * 120.00363 * 60.00420 * 4 2 1 7 7 N 1.31512 * 119.99598 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46923 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47039 * 119.99510 * 8 6 4 11 11 H 1.48495 * 109.46988 * 240.00129 * 8 6 4 12 12 C 1.50704 * 109.46653 * 119.99450 * 2 1 3 13 13 C 1.34086 * 126.35800 * 239.99486 * 12 2 1 14 14 N 1.34727 * 107.79289 * 180.02562 * 13 12 2 15 15 C 1.31048 * 108.60404 * 0.02562 * 14 13 12 16 16 N 1.38165 * 125.71626 * 180.02562 * 15 14 13 17 17 C 1.46502 * 119.99479 * 359.97438 * 16 15 14 18 18 C 1.46497 * 120.00494 * 179.97438 * 16 15 14 19 19 O 1.34214 * 108.57530 * 359.97438 * 15 14 13 20 20 H 1.08999 * 109.47244 * 300.00709 * 1 2 3 21 21 H 1.09000 * 109.46441 * 60.00435 * 1 2 3 22 22 H 1.09000 * 109.46832 * 180.02562 * 1 2 3 23 23 H 0.97003 * 119.99919 * 180.02562 * 7 6 4 24 24 H 1.08006 * 126.10464 * 0.06347 * 13 12 2 25 25 H 1.08994 * 109.47335 * 90.00171 * 17 16 15 26 26 H 1.09003 * 109.46991 * 209.99728 * 17 16 15 27 27 H 1.09001 * 109.47053 * 329.99622 * 17 16 15 28 28 H 1.08998 * 109.46901 * 89.99660 * 18 16 15 29 29 H 1.08998 * 109.47567 * 210.00075 * 18 16 15 30 30 H 1.09001 * 109.46925 * 330.00510 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.6994 -0.2396 -2.4827 7 7 0.9430 0.8294 -2.6035 8 14 2.3226 -1.1200 -4.0078 9 1 3.1475 -2.2868 -3.6035 10 1 1.1679 -1.5871 -4.8163 11 1 3.1475 -0.1863 -4.8159 12 6 2.0323 -0.7103 1.2306 13 6 2.8063 -0.1852 2.1913 14 7 3.0302 -1.1447 3.1101 15 6 2.4133 -2.2375 2.7322 16 7 2.4077 -3.4380 3.4160 17 6 3.1370 -3.5643 4.6803 18 6 1.6725 -4.5847 2.8768 19 8 1.7870 -1.9948 1.5702 20 1 -0.3634 0.5139 0.8899 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 0.7084 1.1605 -3.4845 24 1 3.1827 0.8267 2.2232 25 1 2.4787 -3.2991 5.5075 26 1 3.4775 -4.5926 4.8022 27 1 3.9974 -2.8952 4.6717 28 1 2.3293 -5.1656 2.2294 29 1 1.3242 -5.2116 3.6976 30 1 0.8169 -4.2301 2.3021 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261219340.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:39 Heat of formation + Delta-G solvation = 10.660815 kcal Electronic energy + Delta-G solvation = -13866.660188 eV Core-core repulsion = 11470.287934 eV Total energy + Delta-G solvation = -2396.372254 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.92206 -37.88079 -36.33257 -35.35998 -33.08844 -29.53815 -29.02377 -27.30658 -26.05094 -23.53213 -22.51659 -21.29788 -18.70837 -18.38189 -17.55542 -16.88409 -16.44510 -15.54011 -15.46527 -14.89098 -14.76159 -14.24336 -13.48458 -13.44794 -13.30224 -12.96073 -12.92498 -12.85242 -12.38968 -12.28103 -12.16337 -12.02033 -11.28439 -11.10329 -10.59880 -10.53233 -8.43562 -8.13784 -6.32110 0.93295 1.21543 1.39169 1.41032 1.52747 1.98407 2.40703 2.57282 3.10664 3.88969 4.25065 4.29359 4.47402 4.49710 4.57119 4.75426 4.76335 4.84557 4.92786 5.00224 5.06064 5.20604 5.39343 5.52435 5.74365 5.87473 5.95576 6.19607 6.24092 6.70843 7.10398 7.35884 8.87623 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.041976 B = 0.008442 C = 0.007789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.893536 B = 3316.073233 C = 3594.053094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.120 3.880 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.041 0.959 6 C 0.022 3.978 7 N -0.910 5.910 8 Si 0.958 3.042 9 H -0.275 1.275 10 H -0.274 1.274 11 H -0.273 1.273 12 C -0.034 4.034 13 C -0.055 4.055 14 N -0.553 5.553 15 C 0.416 3.584 16 N -0.588 5.588 17 C 0.114 3.886 18 C 0.095 3.905 19 O -0.232 6.232 20 H 0.031 0.969 21 H 0.072 0.928 22 H 0.023 0.977 23 H 0.267 0.733 24 H 0.192 0.808 25 H 0.061 0.939 26 H 0.108 0.892 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.115 0.885 30 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.431 -8.881 10.226 13.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.101 3.899 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.059 0.941 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.783 3.217 9 H -0.200 1.200 10 H -0.200 1.200 11 H -0.199 1.199 12 C -0.087 4.087 13 C -0.191 4.191 14 N -0.294 5.294 15 C 0.118 3.882 16 N -0.319 5.319 17 C -0.026 4.026 18 C -0.047 4.047 19 O -0.120 6.120 20 H 0.050 0.950 21 H 0.091 0.909 22 H 0.042 0.958 23 H 0.077 0.923 24 H 0.209 0.791 25 H 0.080 0.920 26 H 0.126 0.874 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.134 0.866 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.663 -8.841 10.654 13.944 hybrid contribution -0.168 -0.189 -1.592 1.612 sum 1.495 -9.030 9.062 12.880 Atomic orbital electron populations 1.21629 0.96759 0.99113 1.00593 1.17376 0.93559 0.93468 0.85458 0.93434 1.21235 1.32034 1.12566 0.91336 0.94105 1.25643 0.94930 0.95637 1.01551 1.69962 1.36837 1.23575 1.24535 0.85503 0.78347 0.78593 0.79216 1.20024 1.19977 1.19880 1.23942 1.03837 0.80333 1.00613 1.22948 1.03132 1.00808 0.92169 1.70620 1.28639 0.99142 1.30966 1.22162 0.92217 0.90727 0.83070 1.45416 1.57499 1.04847 1.24160 1.21791 0.95724 1.03976 0.81149 1.21872 0.95478 0.86563 1.00797 1.84340 1.61226 1.31123 1.35350 0.95025 0.90890 0.95823 0.92342 0.79109 0.92017 0.87365 0.91986 0.92331 0.86644 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.16 8.95 71.98 0.64 -5.51 16 2 C 0.12 6.31 2.71 -12.28 -0.03 6.27 16 3 H 0.05 2.58 8.11 -2.39 -0.02 2.56 16 4 C -0.53 -30.40 8.55 25.60 0.22 -30.19 16 5 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 6 C 0.02 1.22 5.30 84.65 0.45 1.67 16 7 N -0.91 -51.34 11.32 21.45 0.24 -51.10 16 8 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 9 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 12 C -0.03 -1.63 5.82 24.74 0.14 -1.49 16 13 C -0.06 -2.42 11.77 83.30 0.98 -1.44 16 14 N -0.55 -23.25 10.62 -313.89 -3.33 -26.59 16 15 C 0.42 16.76 8.43 179.08 1.51 18.27 16 16 N -0.59 -17.27 3.37 -871.45 -2.93 -20.20 16 17 C 0.11 2.35 10.57 127.77 1.35 3.70 16 18 C 0.09 2.11 10.60 127.77 1.35 3.47 16 19 O -0.23 -10.88 10.23 -9.71 -0.10 -10.98 16 20 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 21 H 0.07 3.90 6.07 -2.39 -0.01 3.88 16 22 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 24 H 0.19 7.32 8.06 -2.91 -0.02 7.29 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.11 1.39 8.07 -2.39 -0.02 1.37 16 27 H 0.06 1.50 7.64 -2.39 -0.02 1.48 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.12 1.57 8.07 -2.39 -0.02 1.55 16 30 H 0.05 1.37 7.71 -2.39 -0.02 1.35 16 Total: -1.00 -66.48 261.44 3.64 -62.84 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: 1.12 Total: 5.51 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 6.62 Total: -5.24 kcal Atomic # 7 Polarization: -91.86 SS G_CDS: -6.03 Total: -97.89 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -0.10 Total: -10.98 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -66.48 3.64 -62.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261219340.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.501 kcal (2) G-P(sol) polarization free energy of solvation -66.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds