Wall clock time and date at job start Mon Mar 30 2020 02:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.38695 * 125.98592 * 2 1 4 4 C 1.32867 * 107.91425 * 180.14272 * 3 2 1 5 5 C 1.50701 * 126.04075 * 179.84706 * 4 3 2 6 6 C 1.52997 * 109.47212 * 94.69179 * 5 4 3 7 7 C 1.50697 * 109.47466 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99890 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00428 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00362 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 119.99850 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47052 * 89.99717 * 11 9 7 13 13 H 1.48495 * 109.47307 * 209.99656 * 11 9 7 14 14 H 1.48500 * 109.47143 * 330.00164 * 11 9 7 15 15 N 1.38692 * 107.91438 * 359.58255 * 4 3 2 16 16 C 1.46504 * 125.98271 * 180.25913 * 15 4 3 17 17 C 1.34754 * 125.98214 * 179.67372 * 2 1 3 18 18 O 1.21795 * 125.95154 * 0.04600 * 17 2 1 19 19 H 1.08999 * 109.47373 * 180.30180 * 1 2 3 20 20 H 1.09005 * 109.47189 * 300.30342 * 1 2 3 21 21 H 1.08996 * 109.46779 * 60.29750 * 1 2 3 22 22 H 1.08002 * 126.04560 * 0.02562 * 3 2 1 23 23 H 1.09002 * 109.47060 * 214.69234 * 5 4 3 24 24 H 1.09001 * 109.47380 * 334.69321 * 5 4 3 25 25 H 1.09002 * 109.47153 * 299.99998 * 6 5 4 26 26 H 1.08998 * 109.47533 * 59.99628 * 6 5 4 27 27 H 0.96994 * 119.99814 * 180.02562 * 10 9 7 28 28 H 1.09002 * 109.46525 * 90.00395 * 16 15 4 29 29 H 1.08994 * 109.47073 * 210.00405 * 16 15 4 30 30 H 1.08995 * 109.47003 * 330.00494 * 16 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2799 1.1223 0.0000 4 6 3.5430 0.7101 -0.0031 5 6 4.7640 1.5935 -0.0076 6 6 5.2504 1.7984 1.4285 7 6 6.4717 2.6813 1.4241 8 1 6.8617 3.0589 0.4904 9 6 7.0906 3.0079 2.6120 10 7 8.1561 3.7788 2.6082 11 14 6.4148 2.3566 4.2272 12 1 7.0525 1.0526 4.5406 13 1 6.7091 3.3253 5.3135 14 1 4.9457 2.1739 4.1113 15 7 3.5393 -0.6768 0.0044 16 6 4.7224 -1.5408 0.0095 17 6 2.2567 -1.0904 0.0062 18 8 1.8790 -2.2483 0.0120 19 1 -0.3634 -1.0276 0.0054 20 1 -0.3634 0.5186 0.8873 21 1 -0.3633 0.5092 -0.8926 22 1 1.9467 2.1496 0.0004 23 1 5.5520 1.1213 -0.5942 24 1 4.5125 2.5587 -0.4472 25 1 4.4624 2.2707 2.0151 26 1 5.5019 0.8333 1.8682 27 1 8.5917 4.0083 3.4439 28 1 5.0155 -1.7494 1.0384 29 1 4.4911 -2.4765 -0.4993 30 1 5.5408 -1.0391 -0.5068 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261219982.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:04 Heat of formation + Delta-G solvation = 7.894167 kcal Electronic energy + Delta-G solvation = -13763.957774 eV Core-core repulsion = 11367.465549 eV Total energy + Delta-G solvation = -2396.492225 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.97563 -36.70131 -35.32380 -33.71157 -31.73938 -30.00066 -27.54631 -25.81113 -24.65349 -21.44034 -20.54464 -19.78499 -17.17011 -16.61323 -16.31084 -15.13079 -15.02550 -14.31342 -13.91182 -13.84881 -13.20120 -12.83729 -12.77577 -12.65070 -12.23656 -12.14800 -11.79689 -11.07983 -11.01896 -10.23883 -10.17322 -9.97154 -9.79440 -9.45494 -9.27712 -8.59942 -7.29920 -6.10724 -4.09880 2.53858 2.56241 3.15381 3.27191 3.35504 3.39619 3.72300 4.40146 4.89938 5.23595 5.24876 5.29440 5.40786 5.49400 5.55208 5.56369 5.73281 5.84781 6.13748 6.30529 6.41394 6.60730 6.70681 7.16519 7.18452 7.29603 7.68237 7.72076 8.44629 8.57439 8.93294 9.51574 11.02326 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.042839 B = 0.007841 C = 0.007702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.451124 B = 3570.220731 C = 3634.515217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.539 5.539 3 C -0.039 4.039 4 C 0.048 3.952 5 C -0.038 4.038 6 C -0.007 4.007 7 C -0.524 4.524 8 H 0.074 0.926 9 C 0.069 3.931 10 N -0.901 5.901 11 Si 0.877 3.123 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.265 1.265 15 N -0.531 5.531 16 C 0.101 3.899 17 C 0.644 3.356 18 O -0.589 6.589 19 H 0.085 0.915 20 H 0.069 0.931 21 H 0.069 0.931 22 H 0.179 0.821 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.020 0.980 26 H 0.011 0.989 27 H 0.264 0.736 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.473 -5.350 -4.963 13.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.260 5.260 3 C -0.161 4.161 4 C -0.057 4.057 5 C -0.076 4.076 6 C -0.044 4.044 7 C -0.562 4.562 8 H 0.092 0.908 9 C -0.132 4.132 10 N -0.540 5.540 11 Si 0.704 3.296 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.190 1.190 15 N -0.250 5.250 16 C -0.041 4.041 17 C 0.347 3.653 18 O -0.470 6.470 19 H 0.104 0.896 20 H 0.088 0.912 21 H 0.088 0.912 22 H 0.196 0.804 23 H 0.088 0.912 24 H 0.102 0.898 25 H 0.038 0.962 26 H 0.029 0.971 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.621 -6.121 -4.844 13.999 hybrid contribution -0.227 -0.173 1.024 1.063 sum -11.848 -6.294 -3.820 13.949 Atomic orbital electron populations 1.21627 0.75935 1.04112 1.02235 1.45071 1.06930 1.06279 1.67697 1.21443 0.87882 0.92571 1.14164 1.20906 0.96923 0.82546 1.05370 1.20223 0.90440 0.96059 1.00917 1.19561 0.96903 0.96757 0.91198 1.21091 1.10146 1.29931 0.94989 0.90766 1.24992 0.94573 0.94577 0.99072 1.69904 1.20155 1.36662 1.27248 0.86822 0.80189 0.78888 0.83663 1.20315 1.21323 1.18986 1.45229 1.06616 1.06609 1.66527 1.21694 0.85296 0.93917 1.03201 1.16195 0.81162 0.84804 0.83146 1.90976 1.77573 1.16264 1.62168 0.89585 0.91223 0.91237 0.80414 0.91212 0.89839 0.96175 0.97108 0.92644 0.91391 0.90301 0.89454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.11 11.20 59.85 0.67 1.78 16 2 N -0.54 -8.26 3.18 -128.85 -0.41 -8.67 16 3 C -0.04 -0.58 11.39 -16.29 -0.19 -0.77 16 4 C 0.05 0.80 6.16 -81.34 -0.50 0.29 16 5 C -0.04 -0.68 5.36 -27.88 -0.15 -0.83 16 6 C -0.01 -0.15 4.02 -27.89 -0.11 -0.26 16 7 C -0.52 -14.12 9.66 -34.44 -0.33 -14.45 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 10 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 11 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 15 N -0.53 -9.16 3.18 -124.23 -0.39 -9.55 16 16 C 0.10 1.46 10.89 59.85 0.65 2.12 16 17 C 0.64 11.84 8.52 -86.95 -0.74 11.10 16 18 O -0.59 -12.31 17.40 5.10 0.09 -12.22 16 19 H 0.09 0.97 7.73 -51.93 -0.40 0.56 16 20 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.18 2.09 8.06 -52.49 -0.42 1.66 16 23 H 0.07 1.22 7.33 -51.93 -0.38 0.84 16 24 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 25 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 26 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.08 1.06 8.07 -51.93 -0.42 0.64 16 30 H 0.09 1.14 7.25 -51.93 -0.38 0.77 16 LS Contribution 260.68 15.07 3.93 3.93 Total: -1.00 -33.31 260.68 -5.52 -38.84 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: -4.04 Total: -3.58 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -0.80 Total: 0.84 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -0.03 Total: -44.44 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.09 Total: -12.22 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -33.31 -5.52 -38.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261219982.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.729 kcal (2) G-P(sol) polarization free energy of solvation -33.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds