Wall clock time and date at job start Mon Mar 30 2020 02:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.38695 * 125.98592 * 2 1 4 4 C 1.32867 * 107.91425 * 180.14272 * 3 2 1 5 5 C 1.50701 * 126.04075 * 179.84706 * 4 3 2 6 6 C 1.52997 * 109.47212 * 94.69179 * 5 4 3 7 7 C 1.50697 * 109.47466 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99890 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00428 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00362 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 119.99850 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47052 * 89.99717 * 11 9 7 13 13 H 1.48495 * 109.47307 * 209.99656 * 11 9 7 14 14 H 1.48500 * 109.47143 * 330.00164 * 11 9 7 15 15 N 1.38692 * 107.91438 * 359.58255 * 4 3 2 16 16 C 1.46504 * 125.98271 * 180.25913 * 15 4 3 17 17 C 1.34754 * 125.98214 * 179.67372 * 2 1 3 18 18 O 1.21795 * 125.95154 * 0.04600 * 17 2 1 19 19 H 1.08999 * 109.47373 * 180.30180 * 1 2 3 20 20 H 1.09005 * 109.47189 * 300.30342 * 1 2 3 21 21 H 1.08996 * 109.46779 * 60.29750 * 1 2 3 22 22 H 1.08002 * 126.04560 * 0.02562 * 3 2 1 23 23 H 1.09002 * 109.47060 * 214.69234 * 5 4 3 24 24 H 1.09001 * 109.47380 * 334.69321 * 5 4 3 25 25 H 1.09002 * 109.47153 * 299.99998 * 6 5 4 26 26 H 1.08998 * 109.47533 * 59.99628 * 6 5 4 27 27 H 0.96994 * 119.99814 * 180.02562 * 10 9 7 28 28 H 1.09002 * 109.46525 * 90.00395 * 16 15 4 29 29 H 1.08994 * 109.47073 * 210.00405 * 16 15 4 30 30 H 1.08995 * 109.47003 * 330.00494 * 16 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2799 1.1223 0.0000 4 6 3.5430 0.7101 -0.0031 5 6 4.7640 1.5935 -0.0076 6 6 5.2504 1.7984 1.4285 7 6 6.4717 2.6813 1.4241 8 1 6.8617 3.0589 0.4904 9 6 7.0906 3.0079 2.6120 10 7 8.1561 3.7788 2.6082 11 14 6.4148 2.3566 4.2272 12 1 7.0525 1.0526 4.5406 13 1 6.7091 3.3253 5.3135 14 1 4.9457 2.1739 4.1113 15 7 3.5393 -0.6768 0.0044 16 6 4.7224 -1.5408 0.0095 17 6 2.2567 -1.0904 0.0062 18 8 1.8790 -2.2483 0.0120 19 1 -0.3634 -1.0276 0.0054 20 1 -0.3634 0.5186 0.8873 21 1 -0.3633 0.5092 -0.8926 22 1 1.9467 2.1496 0.0004 23 1 5.5520 1.1213 -0.5942 24 1 4.5125 2.5587 -0.4472 25 1 4.4624 2.2707 2.0151 26 1 5.5019 0.8333 1.8682 27 1 8.5917 4.0083 3.4439 28 1 5.0155 -1.7494 1.0384 29 1 4.4911 -2.4765 -0.4993 30 1 5.5408 -1.0391 -0.5068 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261219982.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:04 Heat of formation + Delta-G solvation = -13.417667 kcal Electronic energy + Delta-G solvation = -13764.881925 eV Core-core repulsion = 11367.465549 eV Total energy + Delta-G solvation = -2397.416375 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.23028 -38.10641 -36.56670 -35.49217 -33.56931 -31.20121 -29.06159 -26.99678 -26.11956 -23.08362 -21.89796 -21.12585 -18.99582 -18.07289 -17.57812 -16.39506 -16.34474 -16.26572 -15.08210 -14.94824 -14.88151 -14.59102 -14.08749 -13.93630 -13.48944 -13.26965 -13.25599 -12.87989 -12.52901 -11.92573 -11.75598 -11.64256 -11.47201 -11.27005 -10.73448 -10.65813 -8.57346 -8.26088 -6.28954 1.33497 1.36666 1.39041 1.39550 1.49725 1.81097 2.37450 2.54806 3.10232 3.82877 4.15347 4.21055 4.37573 4.42008 4.53626 4.56157 4.69978 4.75665 4.77947 4.88301 5.03727 5.12602 5.46535 5.47023 5.57964 5.67948 6.00157 6.31109 6.45248 6.80036 7.26409 7.35960 8.90131 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.042839 B = 0.007841 C = 0.007702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.451124 B = 3570.220731 C = 3634.515217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.535 5.535 3 C -0.012 4.012 4 C 0.016 3.984 5 C -0.023 4.023 6 C -0.002 4.002 7 C -0.524 4.524 8 H 0.044 0.956 9 C 0.010 3.990 10 N -0.949 5.949 11 Si 0.940 3.060 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.250 1.250 15 N -0.534 5.534 16 C 0.095 3.905 17 C 0.624 3.376 18 O -0.626 6.626 19 H 0.077 0.923 20 H 0.092 0.908 21 H 0.098 0.902 22 H 0.215 0.785 23 H 0.069 0.931 24 H 0.096 0.904 25 H 0.022 0.978 26 H 0.008 0.992 27 H 0.265 0.735 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.418 -5.247 -4.717 15.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.254 5.254 3 C -0.134 4.134 4 C -0.088 4.088 5 C -0.062 4.062 6 C -0.040 4.040 7 C -0.562 4.562 8 H 0.062 0.938 9 C -0.187 4.187 10 N -0.590 5.590 11 Si 0.765 3.235 12 H -0.198 1.198 13 H -0.212 1.212 14 H -0.173 1.173 15 N -0.253 5.253 16 C -0.047 4.047 17 C 0.326 3.674 18 O -0.510 6.510 19 H 0.095 0.905 20 H 0.111 0.889 21 H 0.117 0.883 22 H 0.232 0.768 23 H 0.087 0.913 24 H 0.114 0.886 25 H 0.041 0.959 26 H 0.026 0.974 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.592 -6.005 -4.612 15.558 hybrid contribution 0.360 -0.161 0.864 0.950 sum -13.232 -6.166 -3.747 15.071 Atomic orbital electron populations 1.21983 0.73354 1.04441 1.04839 1.45393 1.08507 1.05507 1.65985 1.22042 0.87147 0.93720 1.10518 1.20740 0.97224 0.82229 1.08614 1.19935 0.91134 0.97132 0.97960 1.19466 0.94857 0.95288 0.94346 1.21460 1.11375 1.29699 0.93705 0.93782 1.25862 0.94907 0.95024 1.02929 1.70046 1.21982 1.38726 1.28235 0.85810 0.80292 0.78219 0.79211 1.19841 1.21163 1.17326 1.45399 1.06886 1.07119 1.65904 1.21840 0.85130 0.94274 1.03424 1.16471 0.81779 0.85084 0.84027 1.90933 1.78205 1.17765 1.64081 0.90457 0.88905 0.88314 0.76812 0.91287 0.88588 0.95940 0.97382 0.92603 0.91511 0.89622 0.88307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.71 11.20 127.77 1.43 3.15 16 2 N -0.54 -14.80 3.18 -679.76 -2.16 -16.96 16 3 C -0.01 -0.32 11.39 82.43 0.94 0.62 16 4 C 0.02 0.51 6.16 40.30 0.25 0.76 16 5 C -0.02 -0.79 5.36 29.85 0.16 -0.63 16 6 C 0.00 -0.08 4.02 29.85 0.12 0.04 16 7 C -0.52 -28.20 9.66 25.60 0.25 -27.95 16 8 H 0.04 2.57 7.99 -2.91 -0.02 2.54 16 9 C 0.01 0.55 5.47 84.65 0.46 1.02 16 10 N -0.95 -57.65 13.96 21.45 0.30 -57.35 16 11 Si 0.94 43.31 27.47 68.60 1.88 45.19 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 13 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 14 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 15 N -0.53 -17.61 3.18 -665.13 -2.11 -19.73 16 16 C 0.09 2.67 10.89 127.77 1.39 4.06 16 17 C 0.62 22.01 8.52 179.07 1.53 23.53 16 18 O -0.63 -25.86 17.40 -4.65 -0.08 -25.94 16 19 H 0.08 1.58 7.73 -2.39 -0.02 1.56 16 20 H 0.09 1.29 8.14 -2.38 -0.02 1.28 16 21 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 22 H 0.22 3.87 8.06 -2.91 -0.02 3.84 16 23 H 0.07 2.32 7.33 -2.39 -0.02 2.30 16 24 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 25 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 26 H 0.01 0.34 7.57 -2.39 -0.02 0.33 16 27 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 28 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.09 2.26 8.07 -2.39 -0.02 2.24 16 30 H 0.10 2.50 7.25 -2.39 -0.02 2.48 16 Total: -1.00 -71.69 260.68 5.42 -66.27 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: 1.06 Total: 3.92 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 6.53 Total: 4.59 kcal Atomic # 7 Polarization: -90.06 SS G_CDS: -3.97 Total: -94.03 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.08 Total: -25.94 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.88 Total: 45.19 kcal Total: -71.69 5.42 -66.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261219982.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.854 kcal (2) G-P(sol) polarization free energy of solvation -71.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds