Wall clock time and date at job start Mon Mar 30 2020 02:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.47175 * 2 1 4 4 N 1.40069 * 126.03035 * 89.98081 * 3 2 1 5 5 C 1.30837 * 108.33828 * 180.02562 * 4 3 2 6 6 C 1.50703 * 125.85687 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47088 * 335.01777 * 6 5 4 8 8 C 1.53005 * 109.46654 * 215.02220 * 6 5 4 9 9 C 1.50701 * 109.47151 * 95.02638 * 6 5 4 10 10 H 1.08002 * 119.99761 * 359.97438 * 9 6 5 11 11 C 1.37871 * 119.99694 * 180.27762 * 9 6 5 12 12 N 1.31514 * 120.00482 * 359.71466 * 11 9 6 13 13 Si 1.86801 * 119.99746 * 179.72062 * 11 9 6 14 14 H 1.48504 * 109.47209 * 89.99886 * 13 11 9 15 15 H 1.48501 * 109.47358 * 209.99377 * 13 11 9 16 16 H 1.48496 * 109.47341 * 329.99989 * 13 11 9 17 17 C 1.39817 * 108.28108 * 0.26182 * 5 4 3 18 18 C 1.35128 * 126.04008 * 270.00356 * 3 2 1 19 19 O 1.35761 * 126.19298 * 359.97438 * 18 3 2 20 20 H 1.09001 * 109.47001 * 299.99503 * 1 2 3 21 21 H 1.08998 * 109.47521 * 59.99416 * 1 2 3 22 22 H 1.08997 * 109.47334 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47001 * 240.00497 * 2 1 3 24 24 H 1.08998 * 109.47521 * 120.00584 * 2 1 3 25 25 H 1.08995 * 109.47438 * 299.99560 * 8 6 5 26 26 H 1.08996 * 109.47069 * 60.00420 * 8 6 5 27 27 H 1.09004 * 109.46658 * 179.97438 * 8 6 5 28 28 H 0.96995 * 120.00207 * 179.97438 * 12 11 9 29 29 H 1.08002 * 126.08230 * 179.70858 * 17 5 4 30 30 H 0.96694 * 114.00136 * 89.99932 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2926 2.1581 1.1327 5 6 2.7077 3.3335 0.7351 6 6 3.1118 4.4763 1.6305 7 1 2.6159 4.3745 2.5958 8 6 2.7014 5.8007 0.9835 9 6 4.6056 4.4555 1.8283 10 1 5.2026 3.6909 1.3535 11 6 5.2094 5.4089 2.6205 12 7 4.4824 6.3397 3.1989 13 14 7.0601 5.3784 2.8720 14 1 7.7162 6.1953 1.8196 15 1 7.3874 5.9375 4.2083 16 1 7.5482 3.9785 2.7881 17 6 2.7068 3.3490 -0.6629 18 6 2.2832 2.1308 -1.0927 19 8 2.1455 1.7401 -2.3855 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 3.1973 5.9026 0.0182 26 1 1.6210 5.8158 0.8404 27 1 2.9933 6.6273 1.6313 28 1 4.9071 7.0102 3.7565 29 1 2.9941 4.1801 -1.2900 30 1 1.2727 1.9210 -2.7602 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261224550.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:24 Heat of formation + Delta-G solvation = 26.537634 kcal Electronic energy + Delta-G solvation = -13796.126038 eV Core-core repulsion = 11400.442254 eV Total energy + Delta-G solvation = -2395.683783 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.69360 -36.94642 -34.88834 -33.38527 -30.76693 -28.54984 -28.15097 -25.07446 -23.40716 -21.84728 -20.59018 -18.93225 -17.47705 -16.41054 -15.90505 -14.75986 -14.47405 -14.24037 -13.95159 -13.28483 -12.91210 -12.59198 -12.36245 -11.84010 -11.41713 -11.30775 -11.06242 -10.89254 -10.72685 -10.33743 -10.15484 -9.84916 -9.47582 -9.09830 -8.31649 -8.19395 -7.84309 -5.96115 -4.01550 2.27764 2.90184 3.35452 3.41176 3.45589 3.65236 4.33575 4.51041 4.80905 5.08180 5.24925 5.34643 5.50560 5.56819 5.90021 6.03356 6.24031 6.41044 6.66727 6.92212 6.95526 7.06723 7.21248 7.54646 7.72998 7.88277 7.99804 8.13186 8.41735 8.59955 8.99434 9.61997 11.10201 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.044889 B = 0.007906 C = 0.007823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.611567 B = 3540.981606 C = 3578.326499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.130 3.870 3 N -0.396 5.396 4 N -0.294 5.294 5 C 0.135 3.865 6 C 0.110 3.890 7 H 0.043 0.957 8 C -0.130 4.130 9 C -0.501 4.501 10 H 0.056 0.944 11 C 0.063 3.937 12 N -0.891 5.891 13 Si 0.896 3.104 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.275 1.275 17 C -0.264 4.264 18 C 0.233 3.767 19 O -0.472 6.472 20 H 0.066 0.934 21 H 0.054 0.946 22 H 0.071 0.929 23 H 0.085 0.915 24 H 0.091 0.909 25 H 0.032 0.968 26 H 0.010 0.990 27 H 0.088 0.912 28 H 0.261 0.739 29 H 0.147 0.853 30 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.219 -8.276 -7.964 13.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.008 3.992 3 N -0.188 5.188 4 N -0.118 5.118 5 C -0.031 4.031 6 C 0.090 3.910 7 H 0.061 0.939 8 C -0.188 4.188 9 C -0.540 4.540 10 H 0.074 0.926 11 C -0.138 4.138 12 N -0.530 5.530 13 Si 0.724 3.276 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.200 1.200 17 C -0.294 4.294 18 C 0.065 3.935 19 O -0.274 6.274 20 H 0.085 0.915 21 H 0.073 0.927 22 H 0.090 0.910 23 H 0.103 0.897 24 H 0.109 0.891 25 H 0.051 0.949 26 H 0.029 0.971 27 H 0.107 0.893 28 H 0.071 0.929 29 H 0.165 0.835 30 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -6.932 -9.213 -6.914 13.444 hybrid contribution 0.671 0.468 -0.825 1.162 sum -6.261 -8.746 -7.739 13.251 Atomic orbital electron populations 1.22161 0.95056 1.02394 1.02857 1.21444 0.94523 0.79394 1.03822 1.49155 1.53597 1.12101 1.03995 1.77548 1.25169 1.04478 1.04567 1.23138 0.92311 0.94013 0.93650 1.17397 0.96214 0.85433 0.91952 0.93874 1.21760 0.95769 1.01154 1.00156 1.20962 0.90900 1.12657 1.29469 0.92590 1.24903 0.98198 0.95352 0.95392 1.69879 1.35091 1.15847 1.32208 0.86530 0.85477 0.78254 0.77389 1.20619 1.21192 1.19970 1.21187 1.15528 0.96649 0.96080 1.18783 1.03902 0.90865 0.79976 1.84854 1.37764 1.84557 1.20233 0.91514 0.92728 0.91020 0.89686 0.89077 0.94924 0.97097 0.89323 0.92905 0.83540 0.75847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 10.24 37.15 0.38 -1.42 16 2 C 0.13 1.74 7.11 -4.04 -0.03 1.71 16 3 N -0.40 -7.38 3.62 -61.49 -0.22 -7.60 16 4 N -0.29 -6.73 12.57 33.66 0.42 -6.31 16 5 C 0.13 3.21 6.06 -82.42 -0.50 2.71 16 6 C 0.11 2.91 2.76 -92.92 -0.26 2.65 16 7 H 0.04 1.23 8.14 -51.93 -0.42 0.81 16 8 C -0.13 -3.16 8.56 37.16 0.32 -2.84 16 9 C -0.50 -14.25 8.54 -34.44 -0.29 -14.54 16 10 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 11 C 0.06 1.76 5.31 -17.82 -0.09 1.66 16 12 N -0.89 -25.53 11.33 55.43 0.63 -24.91 16 13 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 16 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 17 C -0.26 -5.56 10.00 -39.81 -0.40 -5.96 16 18 C 0.23 4.27 7.98 -16.92 -0.14 4.14 16 19 O -0.47 -6.77 13.57 -18.99 -0.26 -7.03 16 20 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.03 0.75 7.30 -51.93 -0.38 0.37 16 26 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.09 2.33 6.08 -51.93 -0.32 2.02 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.15 2.91 7.42 -52.49 -0.39 2.52 16 30 H 0.39 3.43 9.06 45.56 0.41 3.84 16 LS Contribution 261.39 15.07 3.94 3.94 Total: -1.00 -32.04 261.39 -4.69 -36.73 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -3.17 Total: 0.33 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -1.01 Total: -11.88 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.83 Total: -38.82 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -0.26 Total: -7.03 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -32.04 -4.69 -36.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261224550.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.264 kcal (2) G-P(sol) polarization free energy of solvation -32.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds