Wall clock time and date at job start Mon Mar 30 2020 02:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.47175 * 2 1 4 4 N 1.40069 * 126.03035 * 89.98081 * 3 2 1 5 5 C 1.30837 * 108.33828 * 180.02562 * 4 3 2 6 6 C 1.50703 * 125.85687 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47088 * 335.01777 * 6 5 4 8 8 C 1.53005 * 109.46654 * 215.02220 * 6 5 4 9 9 C 1.50701 * 109.47151 * 95.02638 * 6 5 4 10 10 H 1.08002 * 119.99761 * 359.97438 * 9 6 5 11 11 C 1.37871 * 119.99694 * 180.27762 * 9 6 5 12 12 N 1.31514 * 120.00482 * 359.71466 * 11 9 6 13 13 Si 1.86801 * 119.99746 * 179.72062 * 11 9 6 14 14 H 1.48504 * 109.47209 * 89.99886 * 13 11 9 15 15 H 1.48501 * 109.47358 * 209.99377 * 13 11 9 16 16 H 1.48496 * 109.47341 * 329.99989 * 13 11 9 17 17 C 1.39817 * 108.28108 * 0.26182 * 5 4 3 18 18 C 1.35128 * 126.04008 * 270.00356 * 3 2 1 19 19 O 1.35761 * 126.19298 * 359.97438 * 18 3 2 20 20 H 1.09001 * 109.47001 * 299.99503 * 1 2 3 21 21 H 1.08998 * 109.47521 * 59.99416 * 1 2 3 22 22 H 1.08997 * 109.47334 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47001 * 240.00497 * 2 1 3 24 24 H 1.08998 * 109.47521 * 120.00584 * 2 1 3 25 25 H 1.08995 * 109.47438 * 299.99560 * 8 6 5 26 26 H 1.08996 * 109.47069 * 60.00420 * 8 6 5 27 27 H 1.09004 * 109.46658 * 179.97438 * 8 6 5 28 28 H 0.96995 * 120.00207 * 179.97438 * 12 11 9 29 29 H 1.08002 * 126.08230 * 179.70858 * 17 5 4 30 30 H 0.96694 * 114.00136 * 89.99932 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2926 2.1581 1.1327 5 6 2.7077 3.3335 0.7351 6 6 3.1118 4.4763 1.6305 7 1 2.6159 4.3745 2.5958 8 6 2.7014 5.8007 0.9835 9 6 4.6056 4.4555 1.8283 10 1 5.2026 3.6909 1.3535 11 6 5.2094 5.4089 2.6205 12 7 4.4824 6.3397 3.1989 13 14 7.0601 5.3784 2.8720 14 1 7.7162 6.1953 1.8196 15 1 7.3874 5.9375 4.2083 16 1 7.5482 3.9785 2.7881 17 6 2.7068 3.3490 -0.6629 18 6 2.2832 2.1308 -1.0927 19 8 2.1455 1.7401 -2.3855 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 3.1973 5.9026 0.0182 26 1 1.6210 5.8158 0.8404 27 1 2.9933 6.6273 1.6313 28 1 4.9071 7.0102 3.7565 29 1 2.9941 4.1801 -1.2900 30 1 1.2727 1.9210 -2.7602 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261224550.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:24 Heat of formation + Delta-G solvation = 2.872286 kcal Electronic energy + Delta-G solvation = -13797.152244 eV Core-core repulsion = 11400.442254 eV Total energy + Delta-G solvation = -2396.709990 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.22135 -38.26225 -36.57022 -34.96655 -32.64543 -30.11778 -29.59287 -27.20091 -24.76140 -23.53679 -21.95319 -20.63052 -18.88268 -18.33985 -17.46361 -16.60414 -15.99901 -15.52441 -15.26560 -14.81284 -14.56480 -14.31096 -13.50054 -13.43439 -13.06236 -12.81830 -12.67705 -12.45158 -12.35637 -12.21320 -12.02242 -11.79835 -11.21679 -11.06348 -10.44842 -9.85822 -9.39101 -8.09864 -6.23852 0.83111 1.42747 1.43582 1.51578 1.55427 1.93371 2.47218 3.10068 3.17233 3.66295 4.10475 4.14924 4.35148 4.55517 4.76755 4.82103 4.82754 4.98060 5.00508 5.16735 5.17930 5.26004 5.56573 5.76601 5.84104 5.89701 6.07282 6.31799 6.76529 6.80815 6.94138 7.43152 8.95456 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.044889 B = 0.007906 C = 0.007823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.611567 B = 3540.981606 C = 3578.326499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.116 3.884 3 N -0.387 5.387 4 N -0.329 5.329 5 C 0.110 3.890 6 C 0.110 3.890 7 H 0.006 0.994 8 C -0.116 4.116 9 C -0.522 4.522 10 H 0.041 0.959 11 C 0.019 3.981 12 N -0.914 5.914 13 Si 0.959 3.041 14 H -0.269 1.269 15 H -0.278 1.278 16 H -0.277 1.277 17 C -0.294 4.294 18 C 0.262 3.738 19 O -0.462 6.462 20 H 0.043 0.957 21 H 0.064 0.936 22 H 0.106 0.894 23 H 0.113 0.887 24 H 0.091 0.909 25 H 0.040 0.960 26 H 0.028 0.972 27 H 0.065 0.935 28 H 0.265 0.735 29 H 0.151 0.849 30 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.364 -9.626 -9.617 15.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.004 4.004 3 N -0.180 5.180 4 N -0.154 5.154 5 C -0.055 4.055 6 C 0.090 3.910 7 H 0.024 0.976 8 C -0.174 4.174 9 C -0.561 4.561 10 H 0.060 0.940 11 C -0.180 4.180 12 N -0.553 5.553 13 Si 0.784 3.216 14 H -0.195 1.195 15 H -0.203 1.203 16 H -0.202 1.202 17 C -0.324 4.324 18 C 0.092 3.908 19 O -0.269 6.269 20 H 0.062 0.938 21 H 0.083 0.917 22 H 0.124 0.876 23 H 0.131 0.869 24 H 0.109 0.891 25 H 0.059 0.941 26 H 0.047 0.953 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.169 0.831 30 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -7.112 -10.568 -8.582 15.359 hybrid contribution 0.626 0.740 -0.389 1.045 sum -6.485 -9.828 -8.971 14.803 Atomic orbital electron populations 1.22109 0.92765 1.04453 1.02224 1.21968 0.96409 0.76770 1.05216 1.49495 1.52141 1.13338 1.03012 1.77409 1.26216 1.04841 1.06951 1.22748 0.94151 0.93898 0.94682 1.17189 0.94938 0.87719 0.91147 0.97641 1.21558 0.96942 0.99265 0.99644 1.21147 0.92165 1.12682 1.30137 0.94034 1.25657 1.02598 0.94850 0.94906 1.69992 1.36798 1.16165 1.32336 0.85554 0.80148 0.78125 0.77809 1.19457 1.20298 1.20178 1.21218 1.17840 0.98492 0.94852 1.18590 1.01250 0.89620 0.81334 1.84806 1.40280 1.84060 1.17718 0.93752 0.91727 0.87586 0.86903 0.89100 0.94134 0.95258 0.91630 0.92574 0.83105 0.72299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 10.24 71.98 0.74 -2.17 16 2 C 0.12 2.78 7.11 86.38 0.61 3.40 16 3 N -0.39 -13.80 3.62 -459.76 -1.66 -15.46 16 4 N -0.33 -15.24 12.57 -47.41 -0.60 -15.83 16 5 C 0.11 5.34 6.06 43.09 0.26 5.60 16 6 C 0.11 6.04 2.76 -12.28 -0.03 6.00 16 7 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 8 C -0.12 -5.76 8.56 71.98 0.62 -5.14 16 9 C -0.52 -30.60 8.54 25.60 0.22 -30.39 16 10 H 0.04 2.49 7.74 -2.91 -0.02 2.46 16 11 C 0.02 1.08 5.31 84.65 0.45 1.53 16 12 N -0.91 -53.38 11.33 21.45 0.24 -53.14 16 13 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 14 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 16 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 17 C -0.29 -12.22 10.00 22.12 0.22 -12.00 16 18 C 0.26 9.06 7.98 83.65 0.67 9.73 16 19 O -0.46 -11.43 13.57 -90.88 -1.23 -12.66 16 20 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 21 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.04 1.89 7.30 -2.39 -0.02 1.87 16 26 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 3.54 6.08 -2.38 -0.01 3.53 16 28 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 29 H 0.15 5.93 7.42 -2.91 -0.02 5.91 16 30 H 0.42 5.41 9.06 -74.06 -0.67 4.74 16 Total: -1.00 -70.61 261.39 2.99 -67.62 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: 0.47 Total: 5.96 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: 3.75 Total: -23.44 kcal Atomic # 7 Polarization: -82.42 SS G_CDS: -2.02 Total: -84.43 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -1.23 Total: -12.66 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -70.61 2.99 -67.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261224550.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.488 kcal (2) G-P(sol) polarization free energy of solvation -70.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds