Wall clock time and date at job start Mon Mar 30 2020 02:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46510 * 119.99910 * 2 1 4 4 C 1.39609 * 120.00423 * 180.02562 * 2 1 3 5 5 N 1.33644 * 125.61014 * 179.71589 * 4 2 1 6 6 C 1.30893 * 109.77018 * 179.87544 * 5 4 2 7 7 C 1.50694 * 125.89646 * 180.15307 * 6 5 4 8 8 C 1.50701 * 109.46730 * 270.27040 * 7 6 5 9 9 H 1.08005 * 120.00532 * 0.02562 * 8 7 6 10 10 C 1.37885 * 120.00054 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99853 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00258 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47008 * 60.00174 * 12 10 8 14 14 H 1.48494 * 109.47093 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47428 * 300.00539 * 12 10 8 16 16 N 1.34342 * 108.20845 * 0.38216 * 6 5 4 17 17 C 1.46498 * 126.76183 * 179.74219 * 16 6 5 18 18 N 1.31203 * 125.60687 * 0.02562 * 4 2 1 19 19 H 1.09002 * 109.47391 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46813 * 240.00026 * 1 2 3 21 21 H 1.09004 * 109.47041 * 120.00153 * 1 2 3 22 22 H 1.08999 * 109.47096 * 89.99783 * 3 2 1 23 23 H 1.09001 * 109.46763 * 210.00177 * 3 2 1 24 24 H 1.09005 * 109.46576 * 330.00159 * 3 2 1 25 25 H 1.08998 * 109.47253 * 30.26992 * 7 6 5 26 26 H 1.09004 * 109.47308 * 150.27425 * 7 6 5 27 27 H 0.96994 * 119.99863 * 179.97438 * 11 10 8 28 28 H 1.08999 * 109.47327 * 270.00676 * 17 16 6 29 29 H 1.08999 * 109.47110 * 30.00574 * 17 16 6 30 30 H 1.09002 * 109.47023 * 150.00133 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1631 -1.2090 -0.0005 5 7 3.4932 -1.3395 -0.0060 6 6 3.8135 -2.6087 -0.0021 7 6 5.2133 -3.1666 -0.0028 8 6 5.6796 -3.3514 -1.4239 9 1 5.0277 -3.0905 -2.2445 10 6 6.9390 -3.8526 -1.6766 11 7 7.7331 -4.1699 -0.6774 12 14 7.5168 -4.0823 -3.4380 13 1 7.5050 -2.7725 -4.1376 14 1 8.8963 -4.6320 -3.4388 15 1 6.6082 -5.0255 -4.1381 16 7 2.6789 -3.3280 -0.0025 17 6 2.5668 -4.7887 -0.0042 18 7 1.6213 -2.4039 -0.0016 19 1 -0.3634 1.0277 0.0005 20 1 -0.3633 -0.5138 0.8900 21 1 -0.3633 -0.5139 -0.8900 22 1 2.3791 1.5835 1.0277 23 1 3.1499 1.1384 -0.5139 24 1 1.6083 2.0284 -0.5138 25 1 5.8804 -2.4749 0.5115 26 1 5.2214 -4.1284 0.5102 27 1 8.6189 -4.5229 -0.8552 28 1 2.5386 -5.1497 -1.0323 29 1 3.4265 -5.2197 0.5088 30 1 1.6518 -5.0835 0.5096 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261225476.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:43 Heat of formation + Delta-G solvation = 96.549990 kcal Electronic energy + Delta-G solvation = -13720.302113 eV Core-core repulsion = 11359.947044 eV Total energy + Delta-G solvation = -2360.355069 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.09604 -36.33122 -33.44862 -32.72090 -30.98259 -28.43235 -27.33805 -26.56631 -24.14737 -23.24227 -19.71428 -19.40870 -16.59304 -16.41514 -15.30757 -15.13623 -14.76402 -14.24660 -14.17361 -12.79893 -12.74221 -12.53868 -12.35746 -12.15853 -12.04842 -11.67731 -11.53127 -11.06380 -10.80609 -10.59315 -10.01141 -9.75936 -9.32468 -9.02432 -8.63585 -8.53336 -7.26137 -6.16500 -4.20709 2.63084 2.88514 3.28238 3.32392 3.36417 3.64765 3.96545 4.38223 5.12806 5.20911 5.25329 5.49212 5.59287 5.62278 5.75261 5.89055 5.91525 5.97463 6.06946 6.15210 6.53073 7.10173 7.25707 7.27643 7.58236 7.75649 7.78686 7.98601 8.13164 8.80880 9.16908 9.43487 10.93849 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.039248 B = 0.008168 C = 0.007498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.241891 B = 3427.071496 C = 3733.601926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.604 5.604 3 C 0.116 3.884 4 C 0.463 3.537 5 N -0.583 5.583 6 C 0.349 3.651 7 C 0.089 3.911 8 C -0.515 4.515 9 H 0.057 0.943 10 C 0.065 3.935 11 N -0.891 5.891 12 Si 0.901 3.099 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.276 1.276 16 N -0.393 5.393 17 C 0.113 3.887 18 N -0.396 5.396 19 H 0.070 0.930 20 H 0.048 0.952 21 H 0.048 0.952 22 H 0.041 0.959 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.043 0.957 27 H 0.266 0.734 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.091 3.680 1.554 10.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.332 5.332 3 C -0.027 4.027 4 C 0.095 3.905 5 N -0.317 5.317 6 C 0.074 3.926 7 C 0.050 3.950 8 C -0.554 4.554 9 H 0.075 0.925 10 C -0.138 4.138 11 N -0.529 5.529 12 Si 0.728 3.272 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.202 1.202 16 N -0.184 5.184 17 C -0.030 4.030 18 N -0.235 5.235 19 H 0.088 0.912 20 H 0.067 0.933 21 H 0.067 0.933 22 H 0.059 0.941 23 H 0.095 0.905 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.515 3.755 1.603 11.280 hybrid contribution 0.437 -0.329 -0.971 1.115 sum -10.079 3.425 0.632 10.664 Atomic orbital electron populations 1.21383 0.78528 1.01282 1.01204 1.44986 1.04110 1.00507 1.83569 1.21462 0.97430 0.83114 1.00734 1.20327 0.87847 0.86559 0.95776 1.70250 1.11121 1.18263 1.32051 1.25286 0.92778 0.85487 0.89062 1.18055 0.81256 0.96448 0.99287 1.20790 1.00236 1.43800 0.90572 0.92466 1.24931 0.96215 0.95010 0.97655 1.69924 1.08918 1.43139 1.30903 0.86499 0.77726 0.78679 0.84252 1.20014 1.21034 1.20151 1.49711 1.03657 1.06878 1.58118 1.21681 1.03420 0.74744 1.03198 1.77913 1.09707 0.97113 1.38732 0.91160 0.93315 0.93288 0.94070 0.90540 0.92198 0.92491 0.93901 0.92446 0.91040 0.89022 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.60 10.50 59.85 0.63 2.23 16 2 N -0.60 -10.58 3.41 -191.50 -0.65 -11.24 16 3 C 0.12 1.68 10.56 59.85 0.63 2.31 16 4 C 0.46 10.17 8.36 -321.18 -2.68 7.49 16 5 N -0.58 -14.13 10.54 -11.13 -0.12 -14.24 16 6 C 0.35 8.38 7.16 -155.72 -1.12 7.27 16 7 C 0.09 2.26 5.29 -29.04 -0.15 2.11 16 8 C -0.51 -14.14 9.09 -34.44 -0.31 -14.46 16 9 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 10 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 11 N -0.89 -25.13 13.29 55.43 0.74 -24.39 16 12 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 13 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 N -0.39 -8.54 4.03 -65.11 -0.26 -8.80 16 17 C 0.11 1.88 11.32 59.85 0.68 2.55 16 18 N -0.40 -8.71 12.33 29.99 0.37 -8.34 16 19 H 0.07 0.69 7.79 -51.93 -0.40 0.28 16 20 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.08 1.26 7.66 -51.93 -0.40 0.87 16 24 H 0.06 0.66 7.92 -51.93 -0.41 0.25 16 25 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 26 H 0.04 1.06 7.11 -51.93 -0.37 0.69 16 27 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.09 1.44 7.09 -51.93 -0.37 1.07 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 264.68 15.07 3.99 3.99 Total: -1.00 -32.27 264.68 -7.41 -39.68 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: -4.03 Total: -3.90 kcal Atomic # 6 Polarization: 13.60 SS G_CDS: -2.43 Total: 11.17 kcal Atomic # 7 Polarization: -67.08 SS G_CDS: 0.07 Total: -67.01 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.27 -7.41 -39.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261225476.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.233 kcal (2) G-P(sol) polarization free energy of solvation -32.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds