Wall clock time and date at job start Mon Mar 30 2020 02:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46510 * 119.99910 * 2 1 4 4 C 1.39609 * 120.00423 * 180.02562 * 2 1 3 5 5 N 1.33644 * 125.61014 * 179.71589 * 4 2 1 6 6 C 1.30893 * 109.77018 * 179.87544 * 5 4 2 7 7 C 1.50694 * 125.89646 * 180.15307 * 6 5 4 8 8 C 1.50701 * 109.46730 * 270.27040 * 7 6 5 9 9 H 1.08005 * 120.00532 * 0.02562 * 8 7 6 10 10 C 1.37885 * 120.00054 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99853 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00258 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47008 * 60.00174 * 12 10 8 14 14 H 1.48494 * 109.47093 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47428 * 300.00539 * 12 10 8 16 16 N 1.34342 * 108.20845 * 0.38216 * 6 5 4 17 17 C 1.46498 * 126.76183 * 179.74219 * 16 6 5 18 18 N 1.31203 * 125.60687 * 0.02562 * 4 2 1 19 19 H 1.09002 * 109.47391 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46813 * 240.00026 * 1 2 3 21 21 H 1.09004 * 109.47041 * 120.00153 * 1 2 3 22 22 H 1.08999 * 109.47096 * 89.99783 * 3 2 1 23 23 H 1.09001 * 109.46763 * 210.00177 * 3 2 1 24 24 H 1.09005 * 109.46576 * 330.00159 * 3 2 1 25 25 H 1.08998 * 109.47253 * 30.26992 * 7 6 5 26 26 H 1.09004 * 109.47308 * 150.27425 * 7 6 5 27 27 H 0.96994 * 119.99863 * 179.97438 * 11 10 8 28 28 H 1.08999 * 109.47327 * 270.00676 * 17 16 6 29 29 H 1.08999 * 109.47110 * 30.00574 * 17 16 6 30 30 H 1.09002 * 109.47023 * 150.00133 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1631 -1.2090 -0.0005 5 7 3.4932 -1.3395 -0.0060 6 6 3.8135 -2.6087 -0.0021 7 6 5.2133 -3.1666 -0.0028 8 6 5.6796 -3.3514 -1.4239 9 1 5.0277 -3.0905 -2.2445 10 6 6.9390 -3.8526 -1.6766 11 7 7.7331 -4.1699 -0.6774 12 14 7.5168 -4.0823 -3.4380 13 1 7.5050 -2.7725 -4.1376 14 1 8.8963 -4.6320 -3.4388 15 1 6.6082 -5.0255 -4.1381 16 7 2.6789 -3.3280 -0.0025 17 6 2.5668 -4.7887 -0.0042 18 7 1.6213 -2.4039 -0.0016 19 1 -0.3634 1.0277 0.0005 20 1 -0.3633 -0.5138 0.8900 21 1 -0.3633 -0.5139 -0.8900 22 1 2.3791 1.5835 1.0277 23 1 3.1499 1.1384 -0.5139 24 1 1.6083 2.0284 -0.5138 25 1 5.8804 -2.4749 0.5115 26 1 5.2214 -4.1284 0.5102 27 1 8.6189 -4.5229 -0.8552 28 1 2.5386 -5.1497 -1.0323 29 1 3.4265 -5.2197 0.5088 30 1 1.6518 -5.0835 0.5096 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261225476.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:43 Heat of formation + Delta-G solvation = 77.596556 kcal Electronic energy + Delta-G solvation = -13721.123996 eV Core-core repulsion = 11359.947044 eV Total energy + Delta-G solvation = -2361.176951 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.79503 -37.69140 -35.47177 -34.30061 -32.84166 -30.10481 -28.69886 -28.01923 -25.78774 -25.00244 -21.26413 -21.15972 -18.66316 -17.98332 -16.91279 -16.64736 -16.58497 -15.61664 -15.53208 -14.57010 -14.34836 -14.28332 -13.78559 -13.43161 -13.35101 -13.16666 -12.92746 -12.75799 -12.62965 -12.42474 -11.90492 -11.75948 -10.89349 -10.77887 -10.63262 -10.43497 -8.70488 -8.25683 -6.38267 0.87790 1.42217 1.43489 1.44730 1.53107 2.16748 2.24340 2.43149 3.07622 3.62811 3.89954 4.26472 4.37832 4.44990 4.54220 4.58562 4.68325 4.80729 4.84067 4.92043 5.09873 5.18474 5.24935 5.59720 5.65328 5.92111 6.09846 6.24641 6.46799 6.66780 7.29982 7.47105 8.84438 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.039248 B = 0.008168 C = 0.007498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.241891 B = 3427.071496 C = 3733.601926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.606 5.606 3 C 0.113 3.887 4 C 0.450 3.550 5 N -0.609 5.609 6 C 0.329 3.671 7 C 0.103 3.897 8 C -0.532 4.532 9 H 0.045 0.955 10 C 0.022 3.978 11 N -0.918 5.918 12 Si 0.964 3.036 13 H -0.276 1.276 14 H -0.274 1.274 15 H -0.266 1.266 16 N -0.391 5.391 17 C 0.104 3.896 18 N -0.402 5.402 19 H 0.113 0.887 20 H 0.046 0.954 21 H 0.044 0.956 22 H 0.050 0.950 23 H 0.048 0.952 24 H 0.102 0.898 25 H 0.030 0.970 26 H 0.045 0.955 27 H 0.271 0.729 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.191 3.968 0.842 11.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.334 5.334 3 C -0.029 4.029 4 C 0.081 3.919 5 N -0.345 5.345 6 C 0.053 3.947 7 C 0.063 3.937 8 C -0.571 4.571 9 H 0.063 0.937 10 C -0.178 4.178 11 N -0.556 5.556 12 Si 0.789 3.211 13 H -0.202 1.202 14 H -0.199 1.199 15 H -0.191 1.191 16 N -0.182 5.182 17 C -0.038 4.038 18 N -0.242 5.242 19 H 0.131 0.869 20 H 0.065 0.935 21 H 0.062 0.938 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.121 0.879 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.645 4.044 0.898 12.360 hybrid contribution 0.718 -0.379 -0.707 1.077 sum -10.927 3.665 0.191 11.527 Atomic orbital electron populations 1.21623 0.76082 1.04046 1.00822 1.45536 1.05661 0.99701 1.82468 1.21630 0.96902 0.82842 1.01559 1.20862 0.87350 0.88171 0.95490 1.70175 1.12802 1.18714 1.32761 1.24892 0.92830 0.86163 0.90791 1.17730 0.81944 0.95794 0.98208 1.20933 1.00671 1.44400 0.91072 0.93712 1.25702 0.96065 0.94366 1.01706 1.70010 1.09327 1.43394 1.32885 0.85511 0.77748 0.78591 0.79280 1.20157 1.19924 1.19110 1.49991 1.02861 1.08375 1.56931 1.22026 1.05238 0.72233 1.04260 1.77849 1.09744 0.97267 1.39320 0.86860 0.93516 0.93774 0.93167 0.93306 0.87934 0.95154 0.93730 0.92005 0.90273 0.88416 0.87656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.81 10.50 127.77 1.34 4.15 16 2 N -0.61 -20.26 3.41 -759.78 -2.59 -22.85 16 3 C 0.11 3.07 10.56 127.77 1.35 4.42 16 4 C 0.45 19.59 8.36 260.92 2.18 21.78 16 5 N -0.61 -30.00 10.54 -189.12 -1.99 -31.99 16 6 C 0.33 16.09 7.16 138.23 0.99 17.08 16 7 C 0.10 5.37 5.29 29.10 0.15 5.53 16 8 C -0.53 -29.64 9.09 25.60 0.23 -29.40 16 9 H 0.04 2.56 7.74 -2.91 -0.02 2.53 16 10 C 0.02 1.20 5.46 84.66 0.46 1.66 16 11 N -0.92 -51.94 13.29 21.45 0.28 -51.66 16 12 Si 0.96 42.89 29.54 68.60 2.03 44.92 16 13 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 14 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 15 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 16 N -0.39 -16.88 4.03 -359.90 -1.45 -18.33 16 17 C 0.10 3.34 11.32 127.77 1.45 4.79 16 18 N -0.40 -17.43 12.33 -59.03 -0.73 -18.16 16 19 H 0.11 1.74 7.79 -2.39 -0.02 1.72 16 20 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 21 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 22 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.05 1.60 7.66 -2.39 -0.02 1.58 16 24 H 0.10 1.89 7.92 -2.38 -0.02 1.87 16 25 H 0.03 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.04 2.27 7.11 -2.39 -0.02 2.25 16 27 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 28 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.10 3.01 7.09 -2.39 -0.02 3.00 16 30 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -69.24 264.68 4.83 -64.41 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: 1.12 Total: 3.66 kcal Atomic # 6 Polarization: 21.85 SS G_CDS: 8.16 Total: 30.00 kcal Atomic # 7 Polarization: -136.52 SS G_CDS: -6.48 Total: -142.99 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -69.24 4.83 -64.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261225476.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.011 kcal (2) G-P(sol) polarization free energy of solvation -69.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds