Wall clock time and date at job start Mon Mar 30 2020 02:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46897 * 110.99962 * 2 1 4 4 C 1.38577 * 111.00296 * 123.95940 * 2 1 3 5 5 N 1.31216 * 126.46995 * 359.97118 * 4 2 1 6 6 N 1.28534 * 109.86207 * 180.02562 * 5 4 2 7 7 C 1.30302 * 110.04959 * 0.02562 * 6 5 4 8 8 C 1.50702 * 126.34511 * 179.97438 * 7 6 5 9 9 C 1.50690 * 109.47496 * 90.01761 * 8 7 6 10 10 H 1.08010 * 120.00129 * 359.97438 * 9 8 7 11 11 C 1.37872 * 120.00140 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00028 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00106 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47365 * 60.00149 * 13 11 9 15 15 H 1.48501 * 109.47278 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47141 * 299.99802 * 13 11 9 17 17 N 1.36447 * 126.47586 * 180.02562 * 4 2 1 18 18 C 1.46508 * 127.13445 * 359.93748 * 17 4 2 19 19 H 1.08999 * 109.46876 * 296.04161 * 1 2 3 20 20 H 1.09002 * 109.47191 * 56.04612 * 1 2 3 21 21 H 1.09007 * 109.47009 * 176.04307 * 1 2 3 22 22 H 1.09005 * 109.47428 * 183.95456 * 3 2 1 23 23 H 1.08994 * 109.47486 * 303.95442 * 3 2 1 24 24 H 1.09000 * 109.47037 * 63.96005 * 3 2 1 25 25 H 1.09000 * 109.46775 * 210.02509 * 8 7 6 26 26 H 1.08999 * 109.46632 * 330.01775 * 8 7 6 27 27 H 0.96998 * 120.00460 * 179.97438 * 12 11 9 28 28 H 1.08995 * 109.46827 * 90.00561 * 18 17 4 29 29 H 1.09002 * 109.46533 * 210.00010 * 18 17 4 30 30 H 1.08994 * 109.47135 * 330.00395 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9656 -0.7227 1.0730 5 7 1.2601 -1.3402 1.9910 6 7 2.0445 -1.9087 2.8357 7 6 3.2868 -1.6889 2.5098 8 6 4.5046 -2.1840 3.2467 9 6 4.9114 -3.5277 2.6991 10 1 4.3445 -3.9784 1.8978 11 6 6.0071 -4.1817 3.2210 12 7 6.6971 -3.6332 4.1970 13 14 6.5118 -5.8470 2.5417 14 1 6.8263 -5.7174 1.0962 15 1 7.7117 -6.3349 3.2680 16 1 5.3983 -6.8130 2.7214 17 7 3.2807 -0.9256 1.3752 18 6 4.4447 -0.4291 0.6369 19 1 -0.3633 0.4512 0.9233 20 1 -0.3634 0.5740 -0.8524 21 1 -0.3633 -1.0253 -0.0709 22 1 3.0828 1.3433 -0.0709 23 1 1.5898 1.9163 -0.8524 24 1 1.7044 1.8723 0.9233 25 1 5.3221 -1.4752 3.1149 26 1 4.2735 -2.2788 4.3077 27 1 7.4678 -4.0934 4.5644 28 1 4.7332 0.5468 1.0272 29 1 5.2738 -1.1269 0.7541 30 1 4.1929 -0.3380 -0.4196 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261228454.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:50 Heat of formation + Delta-G solvation = 65.011850 kcal Electronic energy + Delta-G solvation = -13943.173854 eV Core-core repulsion = 11581.451189 eV Total energy + Delta-G solvation = -2361.722665 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.86802 -38.48580 -36.08240 -35.23526 -32.38905 -29.53202 -28.53102 -28.38233 -25.74344 -25.25524 -21.74472 -21.67200 -18.71259 -18.10717 -17.34528 -16.91810 -16.69741 -15.71035 -15.61869 -14.64812 -14.44762 -14.10183 -14.04671 -13.57045 -13.32028 -13.07557 -12.90610 -12.67789 -12.56491 -12.45013 -11.97875 -11.78405 -11.42724 -11.08379 -10.67717 -10.63440 -9.20715 -8.26642 -6.40177 0.90610 1.37959 1.41104 1.43389 1.51666 1.90934 2.39715 2.75555 3.05714 3.68947 3.92955 4.03101 4.13439 4.31171 4.34275 4.51397 4.57235 4.63639 4.69853 4.83012 4.94431 5.10820 5.14650 5.37251 5.57453 5.63245 5.71901 6.00265 6.27149 6.65557 7.28494 7.87064 8.82783 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.052330 B = 0.007839 C = 0.007678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.935164 B = 3570.861658 C = 3645.687230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.456 5.456 3 C 0.015 3.985 4 C 0.339 3.661 5 N -0.365 5.365 6 N -0.345 5.345 7 C 0.216 3.784 8 C 0.114 3.886 9 C -0.535 4.535 10 H 0.044 0.956 11 C 0.021 3.979 12 N -0.919 5.919 13 Si 0.964 3.036 14 H -0.264 1.264 15 H -0.274 1.274 16 H -0.277 1.277 17 N -0.483 5.483 18 C 0.073 3.927 19 H 0.036 0.964 20 H 0.120 0.880 21 H 0.062 0.938 22 H 0.083 0.917 23 H 0.122 0.878 24 H 0.032 0.968 25 H 0.039 0.961 26 H 0.027 0.973 27 H 0.271 0.729 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.398 10.710 -11.259 16.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.180 5.180 3 C -0.131 4.131 4 C -0.019 4.019 5 N -0.209 5.209 6 N -0.183 5.183 7 C -0.053 4.053 8 C 0.074 3.926 9 C -0.574 4.574 10 H 0.063 0.937 11 C -0.179 4.179 12 N -0.557 5.557 13 Si 0.788 3.212 14 H -0.189 1.189 15 H -0.199 1.199 16 H -0.203 1.203 17 N -0.178 5.178 18 C -0.068 4.068 19 H 0.055 0.945 20 H 0.138 0.862 21 H 0.081 0.919 22 H 0.101 0.899 23 H 0.141 0.859 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.045 0.955 27 H 0.080 0.920 28 H 0.117 0.883 29 H 0.106 0.894 30 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.290 10.000 -10.845 15.671 hybrid contribution 1.121 -0.245 0.047 1.148 sum -4.169 9.755 -10.798 15.137 Atomic orbital electron populations 1.22392 0.81721 1.03648 1.02697 1.58918 1.11947 1.14926 1.32225 1.22832 1.02286 0.84754 1.03259 1.23000 0.81953 1.02337 0.94586 1.74316 1.26575 1.16880 1.03135 1.73856 0.99748 1.21947 1.22769 1.25590 0.97465 0.94290 0.87983 1.17522 0.85579 0.95695 0.93787 1.21026 1.12662 1.03788 1.19907 0.93744 1.25725 0.95753 1.01586 0.94884 1.70009 1.19268 1.40322 1.26128 0.85516 0.77712 0.78993 0.78945 1.18901 1.19871 1.20301 1.46207 1.07491 1.41257 1.22877 1.22368 0.85574 1.01380 0.97518 0.94518 0.86219 0.91873 0.89878 0.85919 0.94942 0.94263 0.95512 0.92015 0.88265 0.89382 0.86882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.97 8.94 127.69 1.14 2.11 16 2 N -0.46 -12.35 5.06 -756.03 -3.83 -16.18 16 3 C 0.02 0.28 9.36 127.69 1.20 1.47 16 4 C 0.34 12.87 7.23 260.12 1.88 14.75 16 5 N -0.36 -16.80 11.33 -58.01 -0.66 -17.45 16 6 N -0.35 -17.95 12.18 -49.53 -0.60 -18.56 16 7 C 0.22 10.53 7.26 137.64 1.00 11.53 16 8 C 0.11 6.02 5.18 29.10 0.15 6.17 16 9 C -0.54 -30.23 9.09 25.60 0.23 -29.99 16 10 H 0.04 2.57 7.74 -2.91 -0.02 2.55 16 11 C 0.02 1.15 5.46 84.65 0.46 1.61 16 12 N -0.92 -52.63 13.29 21.44 0.28 -52.35 16 13 Si 0.96 43.38 29.54 68.60 2.03 45.40 16 14 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 15 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 17 N -0.48 -18.89 3.21 -538.18 -1.73 -20.62 16 18 C 0.07 2.03 9.20 127.77 1.18 3.20 16 19 H 0.04 0.91 8.11 -2.39 -0.02 0.89 16 20 H 0.12 1.68 8.12 -2.39 -0.02 1.67 16 21 H 0.06 1.68 8.11 -2.38 -0.02 1.66 16 22 H 0.08 1.40 5.41 -2.38 -0.01 1.39 16 23 H 0.12 1.35 8.12 -2.39 -0.02 1.33 16 24 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.04 2.02 7.93 -2.39 -0.02 2.00 16 26 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 28 H 0.10 2.18 7.85 -2.39 -0.02 2.16 16 29 H 0.09 2.76 7.88 -2.39 -0.02 2.74 16 30 H 0.11 2.46 7.57 -2.39 -0.02 2.44 16 Total: -1.00 -71.58 259.07 3.86 -67.72 By element: Atomic # 1 Polarization: 0.06 SS G_CDS: 1.12 Total: 1.18 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 7.24 Total: 10.85 kcal Atomic # 7 Polarization: -118.63 SS G_CDS: -6.53 Total: -125.16 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -71.58 3.86 -67.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261228454.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.730 kcal (2) G-P(sol) polarization free energy of solvation -71.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds