Wall clock time and date at job start Mon Mar 30 2020 02:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46507 * 109.47047 * 2 1 4 4 C 1.46498 * 119.99984 * 270.00297 * 3 2 1 5 5 C 1.53004 * 109.46909 * 269.99991 * 4 3 2 6 6 C 1.37186 * 119.99403 * 90.00413 * 3 2 1 7 7 N 1.31813 * 125.26583 * 359.97438 * 6 3 2 8 8 C 1.33196 * 109.17078 * 180.02562 * 7 6 3 9 9 C 1.39470 * 107.23772 * 359.97438 * 8 7 6 10 10 C 1.39723 * 126.78493 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99316 * 179.97438 * 10 9 8 12 12 C 1.39984 * 119.99942 * 359.97438 * 10 9 8 13 13 N 1.30956 * 120.00340 * 359.97438 * 12 10 9 14 14 Si 1.86809 * 119.99911 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47057 * 59.99508 * 14 12 10 16 16 H 1.48497 * 109.47235 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.46984 * 299.99722 * 14 12 10 18 18 O 1.34334 * 125.25962 * 180.02562 * 6 3 2 19 19 H 1.08997 * 109.46868 * 299.99371 * 1 2 3 20 20 H 1.08997 * 109.46980 * 59.99585 * 1 2 3 21 21 H 1.08997 * 109.46620 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47306 * 240.00462 * 2 1 3 23 23 H 1.09001 * 109.47415 * 120.00576 * 2 1 3 24 24 H 1.08996 * 109.47447 * 29.99828 * 4 3 2 25 25 H 1.08999 * 109.47075 * 150.00492 * 4 3 2 26 26 H 1.08998 * 109.46933 * 180.02562 * 5 4 3 27 27 H 1.09002 * 109.46897 * 299.99713 * 5 4 3 28 28 H 1.08995 * 109.47520 * 60.00122 * 5 4 3 29 29 H 1.08001 * 126.38574 * 180.02562 * 8 7 6 30 30 H 0.97004 * 119.99661 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.7075 1.8315 -1.7104 6 6 2.2470 2.0278 1.1881 7 7 2.0628 1.5079 2.3853 8 6 2.3823 2.4127 3.3090 9 6 2.7903 3.5641 2.6361 10 6 3.2150 4.7640 3.2124 11 1 3.5085 5.5911 2.5831 12 6 3.2600 4.8939 4.6055 13 7 2.9036 3.8910 5.3686 14 14 3.8285 6.4978 5.3761 15 1 2.9335 7.6003 4.9417 16 1 3.7846 6.3791 6.8557 17 1 5.2188 6.7893 4.9436 18 8 2.6925 3.2892 1.3114 19 1 -0.3633 0.5137 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3632 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 1.5817 1.6878 -2.0283 25 1 2.0956 3.1411 -1.1383 26 1 3.8892 2.3457 -2.6541 27 1 4.3883 2.2156 -0.9508 28 1 3.8745 0.7623 -1.8408 29 1 2.3352 2.2793 4.3798 30 1 2.9345 3.9813 6.3339 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261231524.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:12 Heat of formation + Delta-G solvation = 15.301940 kcal Electronic energy + Delta-G solvation = -13934.074428 eV Core-core repulsion = 11537.903429 eV Total energy + Delta-G solvation = -2396.171000 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.84225 -36.78125 -33.81732 -32.71537 -31.45169 -29.46129 -27.92285 -24.52340 -23.25642 -21.72387 -20.47622 -18.98060 -17.49827 -16.34262 -15.39722 -15.15185 -14.65995 -13.77201 -13.49536 -13.33024 -12.91480 -12.52500 -12.16176 -11.93113 -11.62844 -11.34723 -11.29185 -11.18293 -10.67495 -10.60920 -10.49999 -10.16568 -9.68762 -9.47984 -8.48496 -8.37300 -6.70696 -6.60430 -4.15609 2.95128 3.06101 3.09248 3.40391 3.57890 3.90909 4.63016 5.02536 5.28655 5.30756 5.53282 5.55064 5.71032 5.81474 5.85166 5.97767 6.09157 6.18389 6.40619 6.52259 6.64631 6.87378 7.07277 7.31308 7.50570 7.93543 8.15792 8.38058 8.70868 8.84448 8.90455 9.94832 10.25609 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.050729 B = 0.008256 C = 0.007400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.825145 B = 3390.785366 C = 3782.983739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.152 3.848 3 N -0.589 5.589 4 C 0.135 3.865 5 C -0.169 4.169 6 C 0.314 3.686 7 N -0.509 5.509 8 C -0.154 4.154 9 C 0.113 3.887 10 C -0.422 4.422 11 H 0.078 0.922 12 C 0.064 3.936 13 N -0.800 5.800 14 Si 0.937 3.063 15 H -0.266 1.266 16 H -0.276 1.276 17 H -0.266 1.266 18 O -0.254 6.254 19 H 0.062 0.938 20 H 0.046 0.954 21 H 0.056 0.944 22 H 0.062 0.938 23 H 0.079 0.921 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.193 0.807 30 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.881 -2.567 -7.860 8.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.030 3.970 3 N -0.319 5.319 4 C 0.011 3.989 5 C -0.228 4.228 6 C 0.022 3.978 7 N -0.246 5.246 8 C -0.296 4.296 9 C 0.061 3.939 10 C -0.453 4.453 11 H 0.096 0.904 12 C -0.151 4.151 13 N -0.429 5.429 14 Si 0.762 3.238 15 H -0.190 1.190 16 H -0.201 1.201 17 H -0.190 1.190 18 O -0.145 6.145 19 H 0.081 0.919 20 H 0.065 0.935 21 H 0.075 0.925 22 H 0.080 0.920 23 H 0.098 0.902 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.210 0.790 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.111 -3.217 -7.606 8.333 hybrid contribution 0.502 1.439 0.201 1.537 sum -0.610 -1.778 -7.405 7.640 Atomic orbital electron populations 1.22210 0.97394 1.00952 1.02142 1.21019 0.93203 0.80994 1.01813 1.44285 1.75342 1.12728 0.99523 1.21121 0.95462 0.97466 0.84897 1.22247 0.98369 1.01356 1.00878 1.20681 1.07491 0.81764 0.87822 1.69934 1.24430 1.33375 0.96885 1.23930 1.16669 0.89668 0.99312 1.20378 1.00186 0.97238 0.76088 1.18105 1.39715 0.96285 0.91223 0.90394 1.25681 0.94190 0.98838 0.96374 1.69633 1.36219 1.30821 1.06203 0.85891 0.79819 0.80375 0.77764 1.19044 1.20115 1.19035 1.84275 1.70674 1.29526 1.30014 0.91931 0.93452 0.92539 0.91992 0.90249 0.91526 0.91325 0.92469 0.92321 0.92949 0.79037 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.53 10.24 37.16 0.38 -2.15 16 2 C 0.15 2.53 6.24 -4.04 -0.03 2.50 16 3 N -0.59 -11.77 2.54 -176.08 -0.45 -12.21 16 4 C 0.13 2.19 6.27 -4.04 -0.03 2.17 16 5 C -0.17 -2.48 10.24 37.16 0.38 -2.10 16 6 C 0.31 8.03 8.38 -87.28 -0.73 7.29 16 7 N -0.51 -14.09 10.49 -13.55 -0.14 -14.23 16 8 C -0.15 -4.54 10.88 -16.50 -0.18 -4.72 16 9 C 0.11 3.34 7.07 -38.57 -0.27 3.07 16 10 C -0.42 -11.84 9.43 -38.37 -0.36 -12.20 16 11 H 0.08 2.07 7.85 -52.49 -0.41 1.66 16 12 C 0.06 1.67 5.50 -17.27 -0.09 1.57 16 13 N -0.80 -21.29 10.31 55.55 0.57 -20.72 16 14 Si 0.94 19.19 29.56 -169.99 -5.03 14.16 16 15 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 16 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 17 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 18 O -0.25 -7.07 10.19 1.77 0.02 -7.05 16 19 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 20 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.06 0.82 8.07 -51.93 -0.42 0.41 16 23 H 0.08 1.46 7.61 -51.93 -0.39 1.07 16 24 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 25 H 0.07 1.21 7.67 -51.93 -0.40 0.81 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.19 5.77 5.74 -52.49 -0.30 5.47 16 30 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 LS Contribution 260.79 15.07 3.93 3.93 Total: -1.00 -30.94 260.79 -6.04 -36.98 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -4.02 Total: 3.71 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -0.93 Total: -4.57 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: -0.02 Total: -47.16 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: 0.02 Total: -7.05 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.94 -6.04 -36.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261231524.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.279 kcal (2) G-P(sol) polarization free energy of solvation -30.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds