Wall clock time and date at job start Mon Mar 30 2020 02:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46507 * 109.47047 * 2 1 4 4 C 1.46498 * 119.99984 * 270.00297 * 3 2 1 5 5 C 1.53004 * 109.46909 * 269.99991 * 4 3 2 6 6 C 1.37186 * 119.99403 * 90.00413 * 3 2 1 7 7 N 1.31813 * 125.26583 * 359.97438 * 6 3 2 8 8 C 1.33196 * 109.17078 * 180.02562 * 7 6 3 9 9 C 1.39470 * 107.23772 * 359.97438 * 8 7 6 10 10 C 1.39723 * 126.78493 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99316 * 179.97438 * 10 9 8 12 12 C 1.39984 * 119.99942 * 359.97438 * 10 9 8 13 13 N 1.30956 * 120.00340 * 359.97438 * 12 10 9 14 14 Si 1.86809 * 119.99911 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47057 * 59.99508 * 14 12 10 16 16 H 1.48497 * 109.47235 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.46984 * 299.99722 * 14 12 10 18 18 O 1.34334 * 125.25962 * 180.02562 * 6 3 2 19 19 H 1.08997 * 109.46868 * 299.99371 * 1 2 3 20 20 H 1.08997 * 109.46980 * 59.99585 * 1 2 3 21 21 H 1.08997 * 109.46620 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47306 * 240.00462 * 2 1 3 23 23 H 1.09001 * 109.47415 * 120.00576 * 2 1 3 24 24 H 1.08996 * 109.47447 * 29.99828 * 4 3 2 25 25 H 1.08999 * 109.47075 * 150.00492 * 4 3 2 26 26 H 1.08998 * 109.46933 * 180.02562 * 5 4 3 27 27 H 1.09002 * 109.46897 * 299.99713 * 5 4 3 28 28 H 1.08995 * 109.47520 * 60.00122 * 5 4 3 29 29 H 1.08001 * 126.38574 * 180.02562 * 8 7 6 30 30 H 0.97004 * 119.99661 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.7075 1.8315 -1.7104 6 6 2.2470 2.0278 1.1881 7 7 2.0628 1.5079 2.3853 8 6 2.3823 2.4127 3.3090 9 6 2.7903 3.5641 2.6361 10 6 3.2150 4.7640 3.2124 11 1 3.5085 5.5911 2.5831 12 6 3.2600 4.8939 4.6055 13 7 2.9036 3.8910 5.3686 14 14 3.8285 6.4978 5.3761 15 1 2.9335 7.6003 4.9417 16 1 3.7846 6.3791 6.8557 17 1 5.2188 6.7893 4.9436 18 8 2.6925 3.2892 1.3114 19 1 -0.3633 0.5137 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3632 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 1.5817 1.6878 -2.0283 25 1 2.0956 3.1411 -1.1383 26 1 3.8892 2.3457 -2.6541 27 1 4.3883 2.2156 -0.9508 28 1 3.8745 0.7623 -1.8408 29 1 2.3352 2.2793 4.3798 30 1 2.9345 3.9813 6.3339 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261231524.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:11 Heat of formation + Delta-G solvation = -5.872117 kcal Electronic energy + Delta-G solvation = -13934.992604 eV Core-core repulsion = 11537.903429 eV Total energy + Delta-G solvation = -2397.089176 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.94308 -38.31696 -35.85382 -34.73741 -32.79783 -31.26381 -29.69557 -26.44089 -24.61113 -23.39721 -22.56490 -20.78517 -19.56133 -18.10986 -17.15192 -17.05528 -16.41675 -15.46133 -15.00183 -14.74172 -14.52950 -14.13250 -13.96142 -13.40308 -13.11853 -12.98457 -12.85144 -12.63667 -12.40577 -12.03433 -11.90226 -11.87793 -11.65953 -11.41731 -10.61135 -10.22143 -8.67715 -8.58889 -6.26077 1.18076 1.37684 1.53656 1.70523 1.71923 2.19393 2.54559 3.15487 3.20227 4.01191 4.22626 4.29728 4.52388 4.53245 4.62458 4.67892 4.82062 4.97930 4.98510 5.09036 5.13666 5.28529 5.30829 5.39833 5.49053 6.05809 6.21728 6.32713 6.64933 6.76315 6.86321 7.83992 8.31299 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.050729 B = 0.008256 C = 0.007400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.825145 B = 3390.785366 C = 3782.983739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.144 3.856 3 N -0.585 5.585 4 C 0.126 3.874 5 C -0.161 4.161 6 C 0.331 3.669 7 N -0.535 5.535 8 C -0.188 4.188 9 C 0.084 3.916 10 C -0.458 4.458 11 H 0.083 0.917 12 C 0.021 3.979 13 N -0.828 5.828 14 Si 1.020 2.980 15 H -0.257 1.257 16 H -0.261 1.261 17 H -0.257 1.257 18 O -0.267 6.267 19 H 0.021 0.979 20 H 0.065 0.935 21 H 0.087 0.913 22 H 0.110 0.890 23 H 0.054 0.946 24 H 0.113 0.887 25 H 0.048 0.952 26 H 0.089 0.911 27 H 0.020 0.980 28 H 0.068 0.932 29 H 0.179 0.821 30 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.796 -2.320 -9.391 9.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.022 3.978 3 N -0.316 5.316 4 C 0.003 3.997 5 C -0.220 4.220 6 C 0.037 3.963 7 N -0.274 5.274 8 C -0.328 4.328 9 C 0.032 3.968 10 C -0.488 4.488 11 H 0.101 0.899 12 C -0.191 4.191 13 N -0.455 5.455 14 Si 0.838 3.162 15 H -0.181 1.181 16 H -0.184 1.184 17 H -0.181 1.181 18 O -0.159 6.159 19 H 0.040 0.960 20 H 0.084 0.916 21 H 0.106 0.894 22 H 0.128 0.872 23 H 0.073 0.927 24 H 0.131 0.869 25 H 0.067 0.933 26 H 0.107 0.893 27 H 0.039 0.961 28 H 0.087 0.913 29 H 0.196 0.804 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.041 -3.010 -9.153 9.691 hybrid contribution 0.433 1.241 0.544 1.423 sum -0.608 -1.768 -8.609 8.810 Atomic orbital electron populations 1.22126 0.95989 1.02678 1.01003 1.21358 0.94319 0.79162 1.02919 1.44987 1.74251 1.13753 0.98636 1.21476 0.97706 0.96470 0.84028 1.22172 0.96079 1.02672 1.01080 1.21494 1.04336 0.80983 0.89473 1.69882 1.26596 1.33366 0.97518 1.23764 1.19072 0.90705 0.99250 1.20823 1.01324 0.98050 0.76640 1.18565 1.41268 0.96209 0.92792 0.89867 1.26906 0.93269 1.03048 0.95904 1.69704 1.35672 1.33027 1.07141 0.84693 0.79501 0.74784 0.77219 1.18112 1.18435 1.18104 1.84267 1.71332 1.30700 1.29591 0.95953 0.91571 0.89435 0.87224 0.92733 0.86891 0.93289 0.89251 0.96110 0.91274 0.80420 0.89598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.43 10.24 71.98 0.74 -3.69 16 2 C 0.14 4.44 6.24 86.38 0.54 4.98 16 3 N -0.59 -22.74 2.54 -821.95 -2.09 -24.83 16 4 C 0.13 3.78 6.27 86.38 0.54 4.32 16 5 C -0.16 -4.32 10.24 71.98 0.74 -3.58 16 6 C 0.33 17.33 8.38 179.18 1.50 18.83 16 7 N -0.54 -30.89 10.49 -310.59 -3.26 -34.15 16 8 C -0.19 -11.71 10.88 84.78 0.92 -10.79 16 9 C 0.08 5.18 7.07 22.93 0.16 5.34 16 10 C -0.46 -26.54 9.43 23.05 0.22 -26.32 16 11 H 0.08 4.55 7.85 -2.91 -0.02 4.52 16 12 C 0.02 1.11 5.50 85.25 0.47 1.58 16 13 N -0.83 -45.14 10.31 21.85 0.23 -44.91 16 14 Si 1.02 38.84 29.56 68.60 2.03 40.87 16 15 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 16 H -0.26 -9.17 7.11 99.48 0.71 -8.47 16 17 H -0.26 -9.39 7.11 99.48 0.71 -8.69 16 18 O -0.27 -15.43 10.19 -16.60 -0.17 -15.60 16 19 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 20 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 21 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 22 H 0.11 2.41 8.07 -2.39 -0.02 2.39 16 23 H 0.05 1.98 7.61 -2.39 -0.02 1.96 16 24 H 0.11 2.41 8.07 -2.39 -0.02 2.39 16 25 H 0.05 1.67 7.67 -2.39 -0.02 1.65 16 26 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.18 11.38 5.74 -2.91 -0.02 11.36 16 30 H 0.29 14.19 8.30 -92.70 -0.77 13.42 16 Total: -1.00 -71.48 260.79 3.69 -67.80 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 1.12 Total: 20.13 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 5.83 Total: -9.32 kcal Atomic # 7 Polarization: -98.77 SS G_CDS: -5.12 Total: -103.89 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.17 Total: -15.60 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Total: -71.48 3.69 -67.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261231524.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.926 kcal (2) G-P(sol) polarization free energy of solvation -71.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds