Wall clock time and date at job start Mon Mar 30 2020 02:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.48143 * 111.00274 * 2 1 4 4 H 1.08999 * 110.94894 * 213.62144 * 3 2 1 5 5 C 1.53001 * 110.94505 * 337.32951 * 3 2 1 6 6 C 1.52998 * 117.49899 * 248.61992 * 5 3 2 7 7 C 1.53003 * 60.00293 * 252.51263 * 6 5 3 8 8 C 1.54794 * 101.87489 * 95.47040 * 3 2 1 9 9 C 1.51807 * 102.23358 * 24.00545 * 8 3 2 10 10 O 1.21295 * 126.04424 * 165.17511 * 9 8 3 11 11 N 1.34596 * 107.91709 * 345.17138 * 9 8 3 12 12 C 1.37103 * 123.52096 * 178.40952 * 11 9 8 13 13 H 1.08000 * 120.00294 * 10.45537 * 12 11 9 14 14 C 1.38955 * 119.99561 * 190.45756 * 12 11 9 15 15 N 1.31408 * 119.99900 * 8.18338 * 14 12 11 16 16 Si 1.86795 * 119.99763 * 188.18075 * 14 12 11 17 17 H 1.48499 * 109.47299 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47003 * 120.00160 * 16 14 12 19 19 H 1.48505 * 109.47271 * 240.00105 * 16 14 12 20 20 H 1.09004 * 109.47012 * 59.99940 * 1 2 3 21 21 H 1.09000 * 109.47339 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47626 * 300.00064 * 1 2 3 23 23 H 1.09000 * 115.55376 * 34.33079 * 5 3 2 24 24 H 1.08999 * 117.49837 * 0.02562 * 6 5 3 25 25 H 1.08999 * 117.50234 * 145.01961 * 6 5 3 26 26 H 1.09001 * 117.49311 * 252.51541 * 7 6 5 27 27 H 1.08995 * 117.50182 * 107.48308 * 7 6 5 28 28 H 1.08999 * 110.84799 * 142.18565 * 8 3 2 29 29 H 1.08998 * 110.85640 * 265.81332 * 8 3 2 30 30 H 0.96998 * 119.99765 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9999 1.3830 0.0000 4 1 2.9309 1.4430 -0.5636 5 6 0.9650 2.3662 -0.5507 6 6 1.2598 3.0184 -1.9030 7 6 1.3594 3.8430 -0.6180 8 6 2.2489 1.6286 1.5079 9 6 2.4110 0.2166 2.0413 10 8 2.8682 -0.0899 3.1222 11 7 1.9575 -0.6351 1.1030 12 6 1.9841 -1.9988 1.2419 13 1 2.2239 -2.4397 2.1983 14 6 1.7027 -2.8138 0.1522 15 7 1.5696 -2.2877 -1.0446 16 14 1.5135 -4.6570 0.3886 17 1 1.7096 -4.9950 1.8213 18 1 0.1532 -5.0736 -0.0371 19 1 2.5280 -5.3679 -0.4305 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.0745 2.1329 -0.3201 24 1 2.1909 2.7468 -2.4004 25 1 0.4143 3.2142 -2.5624 26 1 0.5792 4.5812 -0.4321 27 1 2.3561 4.1140 -0.2698 28 1 3.1591 2.2082 1.6614 29 1 1.3920 2.1211 1.9676 30 1 1.3735 -2.8566 -1.8054 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261254902.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:53 Heat of formation + Delta-G solvation = 36.639511 kcal Electronic energy + Delta-G solvation = -14508.908685 eV Core-core repulsion = 12113.662952 eV Total energy + Delta-G solvation = -2395.245733 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.92089 -38.52438 -37.33431 -34.88790 -32.35462 -31.57534 -27.30017 -26.50015 -24.41445 -23.12307 -21.43540 -20.75568 -19.16874 -17.82902 -17.12850 -16.62769 -16.12375 -15.69634 -15.16218 -14.91914 -14.43839 -14.27894 -13.85741 -13.41750 -13.05093 -12.95384 -12.76347 -12.27642 -12.25940 -12.12145 -11.92041 -11.61138 -11.09127 -11.01946 -10.59034 -10.08513 -8.89409 -8.14707 -5.93119 1.34960 1.42135 1.55050 1.83866 2.17160 2.52353 2.99077 3.17482 3.51192 3.72162 3.85177 3.95173 4.17799 4.24263 4.41722 4.46984 4.55674 4.68317 4.89337 4.93984 5.03559 5.10934 5.18814 5.33574 5.37936 5.39302 5.88252 6.15355 6.67088 7.07404 7.60159 8.08621 8.76996 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.039162 B = 0.011633 C = 0.009527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.812563 B = 2406.302709 C = 2938.396074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.261 5.261 3 C 0.090 3.910 4 H 0.089 0.911 5 C -0.173 4.173 6 C -0.164 4.164 7 C -0.156 4.156 8 C -0.156 4.156 9 C 0.389 3.611 10 O -0.637 6.637 11 N -0.294 5.294 12 C -0.365 4.365 13 H 0.080 0.920 14 C 0.017 3.983 15 N -0.832 5.832 16 Si 0.983 3.017 17 H -0.276 1.276 18 H -0.265 1.265 19 H -0.271 1.271 20 H 0.099 0.901 21 H 0.046 0.954 22 H 0.015 0.985 23 H 0.117 0.883 24 H 0.091 0.909 25 H 0.109 0.891 26 H 0.115 0.885 27 H 0.099 0.901 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.287 9.265 -5.226 11.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.076 5.076 3 C -0.018 4.018 4 H 0.107 0.893 5 C -0.192 4.192 6 C -0.201 4.201 7 C -0.193 4.193 8 C -0.198 4.198 9 C 0.177 3.823 10 O -0.525 6.525 11 N -0.098 5.098 12 C -0.491 4.491 13 H 0.098 0.902 14 C -0.192 4.192 15 N -0.465 5.465 16 Si 0.806 3.194 17 H -0.200 1.200 18 H -0.190 1.190 19 H -0.196 1.196 20 H 0.117 0.883 21 H 0.065 0.935 22 H 0.033 0.967 23 H 0.135 0.865 24 H 0.110 0.890 25 H 0.128 0.872 26 H 0.133 0.867 27 H 0.117 0.883 28 H 0.128 0.872 29 H 0.123 0.877 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.962 8.685 -5.397 10.966 hybrid contribution -0.211 -0.727 0.928 1.198 sum -4.173 7.958 -4.468 10.035 Atomic orbital electron populations 1.22805 0.88111 1.01244 0.99911 1.64996 1.07767 1.11528 1.23354 1.22762 0.98661 0.86817 0.93523 0.89282 1.22409 0.98986 0.94272 1.03523 1.23034 1.03793 1.02901 0.90373 1.23045 1.03737 0.91784 1.00756 1.22749 1.05156 0.94345 0.97506 1.21831 0.85344 0.89673 0.85434 1.90461 1.54541 1.83374 1.24083 1.43893 1.49159 1.05308 1.11476 1.19545 1.52637 0.79186 0.97742 0.90186 1.26002 0.95509 1.03685 0.93955 1.70288 1.41265 1.36490 0.98499 0.85058 0.78566 0.77489 0.78292 1.20040 1.19013 1.19645 0.88278 0.93470 0.96664 0.86523 0.89023 0.87230 0.86703 0.88283 0.87210 0.87706 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.13 7.83 127.69 1.00 2.13 16 2 N -0.26 -12.20 3.74 -508.64 -1.90 -14.11 16 3 C 0.09 3.33 3.66 45.29 0.17 3.50 16 4 H 0.09 3.34 8.01 -2.39 -0.02 3.32 16 5 C -0.17 -4.69 4.14 -10.79 -0.04 -4.73 16 6 C -0.16 -3.62 10.20 30.59 0.31 -3.31 16 7 C -0.16 -3.12 10.13 30.60 0.31 -2.81 16 8 C -0.16 -6.06 6.49 30.81 0.20 -5.86 16 9 C 0.39 20.92 8.10 88.04 0.71 21.64 16 10 O -0.64 -39.24 17.63 -3.08 -0.05 -39.30 16 11 N -0.29 -16.19 2.73 -306.06 -0.84 -17.02 16 12 C -0.36 -21.45 9.62 84.04 0.81 -20.64 16 13 H 0.08 4.99 7.70 -2.91 -0.02 4.97 16 14 C 0.02 0.88 4.92 84.93 0.42 1.30 16 15 N -0.83 -44.21 10.93 21.66 0.24 -43.97 16 16 Si 0.98 42.31 29.56 68.60 2.03 44.34 16 17 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 18 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 19 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 20 H 0.10 3.42 6.43 -2.38 -0.02 3.40 16 21 H 0.05 2.21 7.05 -2.39 -0.02 2.19 16 22 H 0.01 0.59 7.85 -2.38 -0.02 0.57 16 23 H 0.12 3.12 5.59 -2.39 -0.01 3.11 16 24 H 0.09 2.13 8.11 -2.39 -0.02 2.11 16 25 H 0.11 2.03 8.14 -2.39 -0.02 2.02 16 26 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 29 H 0.10 3.63 7.91 -2.39 -0.02 3.61 16 30 H 0.27 13.25 8.31 -92.71 -0.77 12.48 16 Total: -1.00 -70.10 250.52 4.48 -65.61 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 1.13 Total: 13.24 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 3.88 Total: -8.79 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -2.50 Total: -75.10 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -0.05 Total: -39.30 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -70.10 4.48 -65.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254902.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.253 kcal (2) G-P(sol) polarization free energy of solvation -70.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds